Wall clock time and date at job start Fri Apr 10 2020 18:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 O 1.20916 * 124.57038 * 2 1 4 4 C 1.34166 * 112.19752 * 179.97438 * 3 2 1 5 5 C 1.48205 * 126.38827 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99808 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99613 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99343 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.46681 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.67666 * 300.77472 * 9 8 7 11 11 C 1.53290 * 109.67810 * 180.25088 * 9 8 7 12 12 O 1.42965 * 109.22312 * 187.97475 * 11 9 8 13 13 C 1.42963 * 114.16610 * 62.57919 * 12 11 9 14 14 C 1.53292 * 109.22532 * 297.42646 * 13 12 11 15 15 N 1.47158 * 109.67915 * 61.28994 * 9 8 7 16 16 C 1.36934 * 120.97983 * 350.23382 * 15 9 8 17 17 H 1.07994 * 120.00899 * 31.06197 * 16 15 9 18 18 C 1.38819 * 119.99490 * 211.05653 * 16 15 9 19 19 N 1.31617 * 120.00205 * 10.77854 * 18 16 15 20 20 Si 1.86799 * 119.99852 * 190.77272 * 18 16 15 21 21 H 1.48500 * 109.46826 * 90.00417 * 20 18 16 22 22 H 1.48501 * 109.46961 * 209.99930 * 20 18 16 23 23 H 1.48499 * 109.47048 * 330.00203 * 20 18 16 24 24 C 1.36317 * 107.22435 * 0.22109 * 4 3 2 25 25 C 1.34833 * 124.56577 * 179.97438 * 2 1 3 26 26 O 1.21979 * 127.14995 * 0.05192 * 25 2 1 27 27 H 1.09000 * 109.47364 * 0.02794 * 1 2 3 28 28 H 1.09004 * 109.47114 * 120.02666 * 1 2 3 29 29 H 1.08996 * 109.47351 * 240.02648 * 1 2 3 30 30 H 0.96998 * 120.00583 * 359.97438 * 7 5 4 31 31 H 1.08996 * 109.47415 * 59.99916 * 8 7 5 32 32 H 1.09001 * 109.47231 * 299.99144 * 8 7 5 33 33 H 1.08997 * 109.51751 * 307.90256 * 11 9 8 34 34 H 1.09002 * 109.51506 * 68.00569 * 11 9 8 35 35 H 1.09009 * 109.50713 * 57.34912 * 13 12 11 36 36 H 1.08994 * 109.51405 * 177.49559 * 13 12 11 37 37 H 1.09000 * 109.68459 * 172.02205 * 14 13 12 38 38 H 1.09003 * 109.68091 * 292.57435 * 14 13 12 39 39 H 0.96998 * 120.00306 * 180.02562 * 19 18 16 40 40 H 1.07999 * 127.99343 * 179.73704 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7082 0.0006 5 6 4.5760 1.6851 0.0002 6 8 5.7264 1.2944 0.0003 7 7 4.3133 3.0070 -0.0003 8 6 5.4150 3.9728 -0.0012 9 6 4.8475 5.3937 -0.0022 10 1 4.2236 5.5391 -0.8841 11 6 5.9965 6.4084 -0.0095 12 8 5.4652 7.7225 0.1769 13 6 4.8042 7.9143 1.4299 14 6 3.5942 6.9766 1.5110 15 7 4.0458 5.6080 1.2130 16 6 3.7298 4.5650 2.0420 17 1 4.4069 3.7295 2.1411 18 6 2.5390 4.5815 2.7553 19 7 1.6203 5.4833 2.4814 20 14 2.2406 3.3239 4.1039 21 1 2.7346 3.8591 5.3980 22 1 0.7857 3.0444 4.2069 23 1 2.9640 2.0684 3.7788 24 6 3.5769 -0.6501 -0.0041 25 6 2.2300 -1.1103 0.0005 26 8 1.8473 -2.2685 0.0001 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5143 -0.8898 29 1 -0.3634 -0.5134 0.8902 30 1 3.3948 3.3190 -0.0007 31 1 6.0265 3.8255 -0.8914 32 1 6.0273 3.8264 0.8886 33 1 6.6907 6.1783 0.7987 34 1 6.5201 6.3587 -0.9643 35 1 5.4941 7.6897 2.2435 36 1 4.4695 8.9484 1.5105 37 1 3.1685 7.0125 2.5138 38 1 2.8437 7.2819 0.7819 39 1 0.7884 5.4951 2.9801 40 1 4.4812 -1.2405 -0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050889360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:33 Heat of formation + Delta-G solvation = -18.043950 kcal Electronic energy + Delta-G solvation = -27087.839898 eV Core-core repulsion = 23101.222906 eV Total energy + Delta-G solvation = -3986.616992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.22951 -41.02712 -39.91095 -39.36903 -37.04717 -35.48075 -35.34702 -33.42431 -33.30977 -32.16308 -29.39558 -28.87584 -27.13042 -25.24458 -24.83151 -24.34448 -23.17619 -21.54373 -21.25260 -19.87470 -19.51216 -18.70938 -18.04898 -17.65196 -17.44411 -16.71769 -16.35566 -16.27601 -16.20737 -16.11972 -15.55612 -15.41113 -15.13946 -15.02260 -14.77317 -14.70987 -14.34247 -14.25713 -13.74489 -13.58526 -13.13540 -12.90791 -12.75954 -12.51546 -12.14935 -11.98776 -11.85391 -11.77610 -11.37200 -11.24018 -11.11841 -10.66376 -10.56093 -10.07796 -9.70705 -8.61825 -7.87799 -5.38144 -0.59526 0.53285 1.36772 1.38965 1.45482 1.47566 1.67782 1.89065 2.30431 2.43117 3.07099 3.27945 3.40652 3.47799 3.67057 3.88032 4.00746 4.20517 4.25275 4.26511 4.36152 4.50683 4.55604 4.61034 4.66311 4.66970 4.69705 4.77429 4.79823 5.04244 5.12852 5.26601 5.34161 5.65889 5.68847 6.21020 6.32137 6.39712 6.45428 6.78233 6.86544 7.10658 7.76831 8.32983 9.16147 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.005177 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.968799 B = 5407.303980 C = 6493.417644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.446 5.446 3 O 0.007 5.993 4 C 0.040 3.960 5 C 0.598 3.402 6 O -0.535 6.535 7 N -0.672 5.672 8 C 0.135 3.865 9 C 0.124 3.876 10 H 0.043 0.957 11 C 0.057 3.943 12 O -0.398 6.398 13 C 0.046 3.954 14 C 0.149 3.851 15 N -0.605 5.605 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 0.934 3.066 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.280 1.280 24 C -0.249 4.249 25 C 0.470 3.530 26 O -0.563 6.563 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.418 0.582 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.121 0.879 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.008 0.992 39 H 0.250 0.750 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -1.795 -6.296 6.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.206 5.206 3 O -0.005 6.005 4 C -0.019 4.019 5 C 0.379 3.621 6 O -0.414 6.414 7 N -0.321 5.321 8 C 0.012 3.988 9 C 0.018 3.982 10 H 0.060 0.940 11 C -0.022 4.022 12 O -0.317 6.317 13 C -0.032 4.032 14 C 0.023 3.977 15 N -0.331 5.331 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.221 4.221 19 N -0.566 5.566 20 Si 0.764 3.236 21 H -0.219 1.219 22 H -0.220 1.220 23 H -0.205 1.205 24 C -0.273 4.273 25 C 0.270 3.730 26 O -0.448 6.448 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.256 0.744 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.026 0.974 39 H 0.060 0.940 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.837 -2.252 -6.365 6.997 hybrid contribution -1.068 -0.672 1.380 1.869 sum 0.769 -2.924 -4.985 5.831 Atomic orbital electron populations 1.22570 0.68397 1.07115 1.05940 1.46420 1.07135 0.99297 1.67797 1.84134 1.15304 1.21024 1.79996 1.23438 0.81838 0.96297 1.00331 1.16671 0.85135 0.81808 0.78442 1.90823 1.18887 1.79104 1.52591 1.46046 1.12693 1.04085 1.69294 1.21419 0.88327 0.86277 1.02744 1.21606 0.93452 0.93063 0.90084 0.93986 1.23010 0.94130 0.82266 1.02786 1.87816 1.74764 1.31002 1.38069 1.23203 0.94473 1.00267 0.85225 1.21240 0.92836 0.83579 1.00018 1.44282 1.61826 1.03826 1.23176 1.19275 0.99409 0.99961 1.18688 0.91101 1.25497 0.95595 0.99262 1.01792 1.70070 1.07044 1.37395 1.42089 0.85800 0.76669 0.80100 0.81038 1.21900 1.21964 1.20507 1.23421 0.99777 0.93266 1.10881 1.18447 0.87255 0.85430 0.81879 1.90911 1.79751 1.16956 1.57168 0.86358 0.87169 0.88490 0.74365 0.88321 0.91641 0.93009 0.86142 0.93810 0.88036 0.91692 0.97415 0.94022 0.77867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 11.18 127.77 1.43 3.24 16 2 N -0.45 -12.62 3.68 -492.74 -1.82 -14.44 16 3 O 0.01 0.22 10.69 70.45 0.75 0.97 16 4 C 0.04 1.25 7.25 24.47 0.18 1.43 16 5 C 0.60 19.54 7.84 86.89 0.68 20.23 16 6 O -0.53 -19.19 16.89 -3.69 -0.06 -19.25 16 7 N -0.67 -21.71 3.80 -465.62 -1.77 -23.48 16 8 C 0.14 4.07 4.44 86.38 0.38 4.45 16 9 C 0.12 4.10 3.20 44.97 0.14 4.24 16 10 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 11 C 0.06 1.62 6.29 72.08 0.45 2.08 16 12 O -0.40 -13.30 10.74 -148.98 -1.60 -14.90 16 13 C 0.05 1.58 6.99 72.08 0.50 2.08 16 14 C 0.15 6.29 5.38 86.35 0.46 6.75 16 15 N -0.61 -25.16 3.03 -673.68 -2.04 -27.21 16 16 C -0.24 -11.06 7.11 84.04 0.60 -10.46 16 17 H 0.07 3.24 5.81 -2.91 -0.02 3.22 16 18 C -0.02 -1.17 5.06 84.86 0.43 -0.74 16 19 N -0.92 -47.37 11.13 21.65 0.24 -47.13 16 20 Si 0.93 41.14 29.57 68.60 2.03 43.17 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 C -0.25 -7.54 10.94 22.84 0.25 -7.29 16 25 C 0.47 15.33 8.02 85.25 0.68 16.01 16 26 O -0.56 -21.25 17.92 -5.25 -0.09 -21.34 16 27 H 0.12 1.87 8.14 -2.39 -0.02 1.86 16 28 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.42 14.51 7.19 -92.71 -0.67 13.84 16 31 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.07 2.14 7.53 -2.39 -0.02 2.13 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.06 3.11 6.32 -2.39 -0.02 3.09 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.25 12.78 8.31 -92.71 -0.77 12.01 16 40 H 0.20 5.45 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -62.55 337.10 2.25 -60.30 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.42 Total: 21.29 kcal Atomic # 6 Polarization: 35.81 SS G_CDS: 6.20 Total: 42.01 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -5.39 Total: -112.26 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -1.00 Total: -54.51 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -62.55 2.25 -60.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050889360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.254 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds