Wall clock time and date at job start Fri Apr 10 2020 18:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46794 * 300.00177 * 3 2 1 6 6 H 1.48504 * 109.47251 * 59.99862 * 3 2 1 7 7 C 1.38812 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99919 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99519 * 0.02562 * 7 2 1 10 10 C 1.47672 * 134.44853 * 180.02562 * 9 7 2 11 11 C 1.53446 * 85.97741 * 155.71868 * 10 9 7 12 12 C 1.47655 * 134.46181 * 0.02562 * 9 7 2 13 13 C 1.52895 * 113.55766 * 137.62320 * 11 10 9 14 14 N 1.47338 * 108.08153 * 180.02562 * 13 11 10 15 15 C 1.34777 * 121.06113 * 131.55323 * 14 13 11 16 16 O 1.21283 * 119.99288 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00297 * 179.97438 * 15 14 13 18 18 H 1.08996 * 110.50767 * 317.25721 * 17 15 14 19 19 C 1.54089 * 110.55992 * 79.99955 * 17 15 14 20 20 O 1.45703 * 104.00972 * 118.57460 * 19 17 15 21 21 C 1.33764 * 109.47577 * 359.97438 * 20 19 17 22 22 O 1.21516 * 123.07394 * 180.02562 * 21 20 19 23 23 N 1.34010 * 113.85825 * 0.02562 * 21 20 19 24 24 C 1.47134 * 117.88603 * 311.56933 * 14 13 11 25 25 C 1.53220 * 108.73143 * 52.22175 * 24 14 13 26 26 O 1.42591 * 113.88888 * 268.73304 * 11 10 9 27 27 H 0.97005 * 119.99696 * 359.97438 * 1 2 3 28 28 H 1.09009 * 113.79512 * 41.45824 * 10 9 7 29 29 H 1.08995 * 113.89900 * 269.99963 * 10 9 7 30 30 H 1.09002 * 113.79634 * 90.01099 * 12 9 7 31 31 H 1.09004 * 113.79325 * 318.53745 * 12 9 7 32 32 H 1.09002 * 109.74835 * 60.35836 * 13 11 10 33 33 H 1.09000 * 109.75035 * 299.68161 * 13 11 10 34 34 H 1.09009 * 110.52113 * 237.20152 * 19 17 15 35 35 H 1.08996 * 110.52684 * 359.80069 * 19 17 15 36 36 H 0.97001 * 125.55703 * 180.02562 * 23 21 20 37 37 H 1.08999 * 109.59268 * 172.00062 * 24 14 13 38 38 H 1.08999 * 109.59404 * 292.29442 * 24 14 13 39 39 H 1.08998 * 109.48927 * 65.85201 * 25 24 14 40 40 H 1.09001 * 109.48660 * 185.91897 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.7213 -3.8107 -0.0019 11 6 0.3477 -4.0813 0.6263 12 6 -0.1043 -2.7567 -0.0029 13 6 -0.3598 -5.3055 0.0447 14 7 -1.6569 -5.4517 0.7282 15 6 -2.7936 -5.6415 0.0295 16 8 -2.7592 -5.6938 -1.1817 17 6 -4.1073 -5.7887 0.7531 18 1 -3.9927 -6.4320 1.6255 19 6 -4.6551 -4.4090 1.1662 20 8 -5.9247 -4.3072 0.4586 21 6 -6.1251 -5.4177 -0.2597 22 8 -7.1114 -5.5937 -0.9474 23 7 -5.1388 -6.3185 -0.1518 24 6 -1.6718 -5.3836 2.1979 25 6 -0.9527 -4.1044 2.6385 26 8 0.3522 -4.0682 2.0522 27 1 -0.4850 0.8401 0.0004 28 1 2.5588 -4.0344 0.6590 29 1 1.8404 -4.2357 -0.9985 30 1 -0.5294 -2.8662 -1.0006 31 1 -0.7173 -2.1430 0.6573 32 1 0.2469 -6.1955 0.2116 33 1 -0.5207 -5.1647 -1.0241 34 1 -4.8140 -4.3679 2.2439 35 1 -3.9750 -3.6177 0.8509 36 1 -5.1097 -7.1792 -0.5981 37 1 -2.7023 -5.3644 2.5525 38 1 -1.1600 -6.2536 2.6093 39 1 -1.5231 -3.2353 2.3108 40 1 -0.8638 -4.0930 3.7248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053242034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:51 Heat of formation + Delta-G solvation = -62.673306 kcal Electronic energy + Delta-G solvation = -27166.520150 eV Core-core repulsion = 23177.967884 eV Total energy + Delta-G solvation = -3988.552266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.09774 -40.42054 -38.86035 -37.30981 -36.43435 -34.95496 -34.71916 -32.36845 -30.72518 -29.84688 -28.04744 -26.38601 -25.21471 -24.50544 -23.53152 -22.64425 -21.96775 -19.88876 -18.99579 -18.49369 -18.08110 -17.22646 -16.87907 -16.63856 -16.19547 -15.56157 -15.43513 -15.02551 -14.80634 -14.66924 -14.50028 -14.23784 -14.12141 -13.70732 -13.64323 -13.42543 -12.93758 -12.58148 -12.47335 -12.17716 -11.46403 -11.29274 -11.14809 -10.97225 -10.93172 -10.88704 -10.78123 -10.56963 -10.32715 -9.99782 -9.69239 -9.51591 -9.37884 -8.89726 -8.48787 -6.95350 -5.81710 -3.14094 2.14271 2.19541 2.49555 2.67638 3.24777 3.36753 3.42092 3.44734 3.67550 3.86282 3.88700 4.21859 4.38740 4.61358 4.67453 4.73612 4.82369 4.96942 5.05553 5.09341 5.13349 5.20249 5.44389 5.56503 5.64733 5.77539 5.88594 6.11149 6.24553 6.38983 6.41405 6.45368 6.88058 6.92784 7.07353 7.08021 7.41825 7.66209 7.76694 7.85711 7.91608 8.98790 9.65541 10.50064 11.35622 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.004022 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.017453 B = 6960.497595 C = 7683.368546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.048 3.952 12 C 0.151 3.849 13 C 0.099 3.901 14 N -0.603 5.603 15 C 0.505 3.495 16 O -0.516 6.516 17 C 0.077 3.923 18 H 0.127 0.873 19 C 0.051 3.949 20 O -0.319 6.319 21 C 0.652 3.348 22 O -0.519 6.519 23 N -0.710 5.710 24 C 0.068 3.932 25 C 0.046 3.954 26 O -0.339 6.339 27 H 0.253 0.747 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.440 0.560 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -15.089 8.477 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.010 3.990 11 C 0.006 3.994 12 C 0.025 3.975 13 C -0.023 4.023 14 N -0.338 5.338 15 C 0.289 3.711 16 O -0.390 6.390 17 C -0.034 4.034 18 H 0.145 0.855 19 C -0.024 4.024 20 O -0.229 6.229 21 C 0.405 3.595 22 O -0.403 6.403 23 N -0.383 5.383 24 C -0.055 4.055 25 C -0.032 4.032 26 O -0.257 6.257 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.283 0.717 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.367 -14.458 7.661 17.558 hybrid contribution 0.482 0.450 -0.276 0.715 sum -5.884 -14.008 7.385 16.894 Atomic orbital electron populations 1.69809 1.05080 1.25292 1.56824 1.24762 0.95666 0.97534 1.02323 0.86036 0.78766 0.83614 0.77275 1.20403 1.21737 1.21668 1.19047 0.90321 0.81691 1.43682 0.90005 1.45774 1.01861 0.99150 1.86042 1.22486 0.93124 0.86803 0.96595 1.23770 0.99378 0.94414 0.81807 1.22689 0.88850 0.88819 0.97159 1.22352 0.82046 0.98813 0.99121 1.48169 1.07336 1.71154 1.07095 1.20462 0.84794 0.77776 0.88056 1.90783 1.85826 1.49181 1.13258 1.22328 0.88633 0.97898 0.94523 0.85540 1.24347 0.83261 0.95749 0.99044 1.87319 1.38838 1.37739 1.58986 1.18430 0.83297 0.78758 0.79063 1.91090 1.30003 1.77678 1.41519 1.45659 1.19644 1.21829 1.51174 1.22590 1.02135 1.00952 0.79831 1.22886 0.86026 0.95481 0.98839 1.87979 1.25441 1.94216 1.18021 0.93675 0.92492 0.93194 0.94893 0.90531 0.90824 0.87844 0.86044 0.86574 0.71653 0.89527 0.89862 0.91905 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.39 55.49 0.63 -26.30 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.05 3.70 -180.32 -0.67 -15.72 16 10 C 0.14 2.65 8.34 -3.18 -0.03 2.62 16 11 C 0.05 0.83 1.22 -90.30 -0.11 0.72 16 12 C 0.15 3.39 6.65 -3.18 -0.02 3.37 16 13 C 0.10 1.38 5.78 -3.64 -0.02 1.36 16 14 N -0.60 -6.83 3.03 -172.43 -0.52 -7.35 16 15 C 0.50 6.04 6.84 -10.99 -0.08 5.96 16 16 O -0.52 -8.47 16.05 5.55 0.09 -8.38 16 17 C 0.08 0.62 3.16 -68.19 -0.22 0.41 16 18 H 0.13 0.49 7.08 -51.93 -0.37 0.13 16 19 C 0.05 0.43 7.12 37.73 0.27 0.70 16 20 O -0.32 -4.06 11.09 -37.81 -0.42 -4.48 16 21 C 0.65 8.99 9.16 53.71 0.49 9.48 16 22 O -0.52 -9.09 18.04 -19.12 -0.34 -9.44 16 23 N -0.71 -7.24 5.63 -59.36 -0.33 -7.58 16 24 C 0.07 0.54 6.35 -3.58 -0.02 0.51 16 25 C 0.05 0.52 6.88 37.27 0.26 0.78 16 26 O -0.34 -5.65 10.52 -35.23 -0.37 -6.02 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 29 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.03 0.79 7.94 -51.93 -0.41 0.38 16 31 H 0.08 1.91 6.31 -51.93 -0.33 1.58 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.62 6.91 -51.93 -0.36 1.26 16 34 H 0.12 0.49 8.12 -51.92 -0.42 0.07 16 35 H 0.12 1.11 7.72 -51.93 -0.40 0.71 16 36 H 0.44 3.81 8.96 -40.82 -0.37 3.44 16 37 H 0.09 0.35 5.34 -51.93 -0.28 0.08 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.82 7.19 -51.93 -0.37 0.45 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -37.72 330.39 -6.68 -44.40 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.96 Total: -0.42 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 0.27 Total: 19.39 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.89 Total: -56.95 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.05 Total: -28.32 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.72 -6.68 -44.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053242034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.275 kcal (2) G-P(sol) polarization free energy of solvation -37.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds