Wall clock time and date at job start Fri Apr 10 2020 18:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46794 * 300.00177 * 3 2 1 6 6 H 1.48504 * 109.47251 * 59.99862 * 3 2 1 7 7 C 1.38812 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99919 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99519 * 0.02562 * 7 2 1 10 10 C 1.47672 * 134.44853 * 180.02562 * 9 7 2 11 11 C 1.53446 * 85.97741 * 155.71868 * 10 9 7 12 12 C 1.47655 * 134.46181 * 0.02562 * 9 7 2 13 13 C 1.52895 * 113.55766 * 137.62320 * 11 10 9 14 14 N 1.47338 * 108.08153 * 180.02562 * 13 11 10 15 15 C 1.34777 * 121.06113 * 131.55323 * 14 13 11 16 16 O 1.21283 * 119.99288 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00297 * 179.97438 * 15 14 13 18 18 H 1.08996 * 110.50767 * 317.25721 * 17 15 14 19 19 C 1.54089 * 110.55992 * 79.99955 * 17 15 14 20 20 O 1.45703 * 104.00972 * 118.57460 * 19 17 15 21 21 C 1.33764 * 109.47577 * 359.97438 * 20 19 17 22 22 O 1.21516 * 123.07394 * 180.02562 * 21 20 19 23 23 N 1.34010 * 113.85825 * 0.02562 * 21 20 19 24 24 C 1.47134 * 117.88603 * 311.56933 * 14 13 11 25 25 C 1.53220 * 108.73143 * 52.22175 * 24 14 13 26 26 O 1.42591 * 113.88888 * 268.73304 * 11 10 9 27 27 H 0.97005 * 119.99696 * 359.97438 * 1 2 3 28 28 H 1.09009 * 113.79512 * 41.45824 * 10 9 7 29 29 H 1.08995 * 113.89900 * 269.99963 * 10 9 7 30 30 H 1.09002 * 113.79634 * 90.01099 * 12 9 7 31 31 H 1.09004 * 113.79325 * 318.53745 * 12 9 7 32 32 H 1.09002 * 109.74835 * 60.35836 * 13 11 10 33 33 H 1.09000 * 109.75035 * 299.68161 * 13 11 10 34 34 H 1.09009 * 110.52113 * 237.20152 * 19 17 15 35 35 H 1.08996 * 110.52684 * 359.80069 * 19 17 15 36 36 H 0.97001 * 125.55703 * 180.02562 * 23 21 20 37 37 H 1.08999 * 109.59268 * 172.00062 * 24 14 13 38 38 H 1.08999 * 109.59404 * 292.29442 * 24 14 13 39 39 H 1.08998 * 109.48927 * 65.85201 * 25 24 14 40 40 H 1.09001 * 109.48660 * 185.91897 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 1.7213 -3.8107 -0.0019 11 6 0.3477 -4.0813 0.6263 12 6 -0.1043 -2.7567 -0.0029 13 6 -0.3598 -5.3055 0.0447 14 7 -1.6569 -5.4517 0.7282 15 6 -2.7936 -5.6415 0.0295 16 8 -2.7592 -5.6938 -1.1817 17 6 -4.1073 -5.7887 0.7531 18 1 -3.9927 -6.4320 1.6255 19 6 -4.6551 -4.4090 1.1662 20 8 -5.9247 -4.3072 0.4586 21 6 -6.1251 -5.4177 -0.2597 22 8 -7.1114 -5.5937 -0.9474 23 7 -5.1388 -6.3185 -0.1518 24 6 -1.6718 -5.3836 2.1979 25 6 -0.9527 -4.1044 2.6385 26 8 0.3522 -4.0682 2.0522 27 1 -0.4850 0.8401 0.0004 28 1 2.5588 -4.0344 0.6590 29 1 1.8404 -4.2357 -0.9985 30 1 -0.5294 -2.8662 -1.0006 31 1 -0.7173 -2.1430 0.6573 32 1 0.2469 -6.1955 0.2116 33 1 -0.5207 -5.1647 -1.0241 34 1 -4.8140 -4.3679 2.2439 35 1 -3.9750 -3.6177 0.8509 36 1 -5.1097 -7.1792 -0.5981 37 1 -2.7023 -5.3644 2.5525 38 1 -1.1600 -6.2536 2.6093 39 1 -1.5231 -3.2353 2.3108 40 1 -0.8638 -4.0930 3.7248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053242034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:50 Heat of formation + Delta-G solvation = -95.464825 kcal Electronic energy + Delta-G solvation = -27167.942097 eV Core-core repulsion = 23177.967884 eV Total energy + Delta-G solvation = -3989.974213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.99594 -41.58915 -40.08856 -38.39381 -37.78609 -35.84837 -35.83234 -34.29408 -31.87813 -30.83705 -29.39213 -27.85929 -26.86515 -25.45704 -24.63350 -23.59008 -23.48950 -21.05711 -20.19826 -19.34701 -18.98670 -18.81597 -18.13692 -17.65487 -17.38664 -17.04918 -16.51809 -16.42704 -15.92143 -15.76888 -15.65738 -15.35575 -15.17262 -14.96628 -14.85653 -14.59618 -14.18210 -14.08038 -13.51970 -13.28165 -13.01841 -12.90330 -12.79454 -12.50068 -12.13605 -12.04742 -11.95003 -11.91312 -11.72178 -11.59925 -11.30549 -10.98269 -10.80896 -10.36953 -9.58992 -8.95224 -7.93093 -5.26509 1.24664 1.26270 1.43903 1.45060 1.55210 1.60040 1.75978 2.44565 2.48370 2.67910 2.97659 3.08954 3.25986 3.34383 3.61728 3.68208 3.75765 3.89369 4.02075 4.13465 4.31961 4.39018 4.40629 4.49075 4.64503 4.65950 4.71976 4.84598 4.89543 5.00675 5.12807 5.22333 5.24980 5.45980 5.62902 5.88537 6.01658 6.19271 6.38773 6.82968 6.88370 6.92931 7.57624 8.50171 9.23711 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.004022 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.017453 B = 6960.497595 C = 7683.368546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.085 0.915 9 N -0.636 5.636 10 C 0.131 3.869 11 C 0.083 3.917 12 C 0.150 3.850 13 C 0.108 3.892 14 N -0.602 5.602 15 C 0.501 3.499 16 O -0.570 6.570 17 C 0.087 3.913 18 H 0.191 0.809 19 C 0.044 3.956 20 O -0.339 6.339 21 C 0.648 3.352 22 O -0.569 6.569 23 N -0.698 5.698 24 C 0.071 3.929 25 C 0.033 3.967 26 O -0.362 6.362 27 H 0.247 0.753 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.006 0.994 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.179 0.821 35 H 0.097 0.903 36 H 0.447 0.553 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.038 0.962 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 -17.179 11.227 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.103 0.897 9 N -0.362 5.362 10 C 0.006 3.994 11 C 0.041 3.959 12 C 0.024 3.976 13 C -0.016 4.016 14 N -0.335 5.335 15 C 0.287 3.713 16 O -0.449 6.449 17 C -0.022 4.022 18 H 0.208 0.792 19 C -0.030 4.030 20 O -0.248 6.248 21 C 0.401 3.599 22 O -0.457 6.457 23 N -0.370 5.370 24 C -0.050 4.050 25 C -0.044 4.044 26 O -0.280 6.280 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.196 0.804 35 H 0.115 0.885 36 H 0.292 0.708 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.056 0.944 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.810 -16.594 10.469 20.463 hybrid contribution 0.412 1.123 -1.079 1.610 sum -5.398 -15.472 9.391 18.886 Atomic orbital electron populations 1.70006 1.06511 1.25450 1.58494 1.25592 0.96518 1.00803 1.02949 0.85021 0.78325 0.79385 0.76674 1.18773 1.22283 1.21642 1.19459 0.90889 0.83234 1.42365 0.89685 1.46193 1.03237 1.00642 1.86117 1.22732 0.94934 0.83816 0.97938 1.23122 0.97273 0.92994 0.82522 1.22551 0.87527 0.91939 0.95611 1.22042 0.83718 0.98009 0.97786 1.48249 1.06175 1.70370 1.08691 1.21175 0.86009 0.76480 0.87595 1.90772 1.86663 1.51570 1.15847 1.22669 0.85448 0.98953 0.95149 0.79179 1.24807 0.81338 0.95186 1.01648 1.87285 1.40775 1.37515 1.59245 1.18594 0.83369 0.79229 0.78707 1.91039 1.32236 1.78792 1.43631 1.45634 1.19031 1.21346 1.50979 1.22878 1.05032 0.99828 0.77234 1.23275 0.83932 0.96729 1.00436 1.87931 1.28829 1.94373 1.16912 0.94381 0.91490 0.91458 0.97671 0.93665 0.87656 0.90229 0.80377 0.88486 0.70841 0.84674 0.86746 0.94358 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.01 11.39 21.65 0.25 -57.76 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.23 -13.05 10.70 84.03 0.90 -12.15 16 8 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.64 -32.55 3.70 -729.27 -2.70 -35.25 16 10 C 0.13 5.04 8.34 86.30 0.72 5.76 16 11 C 0.08 2.83 1.22 -10.49 -0.01 2.81 16 12 C 0.15 7.02 6.65 86.30 0.57 7.60 16 13 C 0.11 2.84 5.78 86.18 0.50 3.33 16 14 N -0.60 -11.82 3.03 -817.83 -2.48 -14.29 16 15 C 0.50 10.85 6.84 87.66 0.60 11.45 16 16 O -0.57 -18.67 16.05 -3.04 -0.05 -18.72 16 17 C 0.09 1.07 3.16 44.50 0.14 1.21 16 18 H 0.19 0.04 7.08 -2.39 -0.02 0.02 16 19 C 0.04 0.60 7.12 72.35 0.52 1.11 16 20 O -0.34 -8.23 11.09 -47.25 -0.52 -8.75 16 21 C 0.65 17.49 9.16 129.91 1.19 18.68 16 22 O -0.57 -20.40 18.04 19.63 0.35 -20.04 16 23 N -0.70 -12.79 5.63 -573.42 -3.23 -16.02 16 24 C 0.07 0.75 6.35 86.33 0.55 1.30 16 25 C 0.03 0.65 6.88 72.06 0.50 1.15 16 26 O -0.36 -11.41 10.52 -148.98 -1.57 -12.97 16 27 H 0.25 14.60 8.31 -92.70 -0.77 13.82 16 28 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.07 2.36 8.09 -2.39 -0.02 2.35 16 30 H 0.01 0.28 7.94 -2.39 -0.02 0.27 16 31 H 0.05 2.38 6.31 -2.38 -0.02 2.36 16 32 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 2.52 6.91 -2.39 -0.02 2.50 16 34 H 0.18 0.37 8.12 -2.38 -0.02 0.35 16 35 H 0.10 1.73 7.72 -2.39 -0.02 1.71 16 36 H 0.45 6.94 8.96 -92.71 -0.83 6.11 16 37 H 0.14 0.10 5.34 -2.39 -0.01 0.09 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.04 0.96 7.19 -2.39 -0.02 0.94 16 40 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -90.72 330.39 -1.02 -91.74 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.26 Total: 5.12 kcal Atomic # 6 Polarization: 32.31 SS G_CDS: 6.63 Total: 38.94 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -8.16 Total: -123.32 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -1.79 Total: -60.49 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -90.72 -1.02 -91.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053242034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.724 kcal (2) G-P(sol) polarization free energy of solvation -90.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds