Wall clock time and date at job start Fri Apr 10 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00287 * 2 1 4 4 H 1.48499 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47263 * 299.99736 * 3 2 1 6 6 H 1.48499 * 109.47333 * 59.99774 * 3 2 1 7 7 C 1.38816 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.47711 * 134.43895 * 180.02562 * 9 7 2 11 11 C 1.53277 * 85.91053 * 155.86584 * 10 9 7 12 12 C 1.47714 * 134.43450 * 0.02665 * 9 7 2 13 13 C 1.53768 * 114.70317 * 267.35849 * 11 10 9 14 14 C 1.55461 * 102.01042 * 250.25230 * 13 11 10 15 15 H 1.08997 * 111.14686 * 84.35597 * 14 13 11 16 16 N 1.46501 * 111.10614 * 208.45883 * 14 13 11 17 17 C 1.34778 * 119.99743 * 198.09199 * 16 14 13 18 18 O 1.21276 * 120.00260 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99785 * 180.02562 * 17 16 14 20 20 H 1.09007 * 110.62168 * 321.36921 * 19 17 16 21 21 C 1.54094 * 110.47293 * 84.24728 * 19 17 16 22 22 O 1.45701 * 104.00996 * 118.84916 * 21 19 17 23 23 C 1.33772 * 109.47313 * 359.79086 * 22 21 19 24 24 O 1.21517 * 123.06727 * 180.02562 * 23 22 21 25 25 N 1.34005 * 113.86188 * 359.97438 * 23 22 21 26 26 C 1.55010 * 101.02814 * 326.39765 * 14 13 11 27 27 O 1.42535 * 115.50726 * 140.19504 * 11 10 9 28 28 H 0.97002 * 119.99410 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.80313 * 41.61811 * 10 9 7 30 30 H 1.09005 * 113.79779 * 270.11425 * 10 9 7 31 31 H 1.09000 * 113.79962 * 89.89282 * 12 9 7 32 32 H 1.08995 * 113.80390 * 318.37952 * 12 9 7 33 33 H 1.08996 * 110.92382 * 132.07354 * 13 11 10 34 34 H 1.08997 * 110.92239 * 8.42385 * 13 11 10 35 35 H 0.96996 * 120.00325 * 18.09478 * 16 14 13 36 36 H 1.09005 * 110.69876 * 0.12904 * 21 19 17 37 37 H 1.08994 * 110.45995 * 237.45242 * 21 19 17 38 38 H 0.97001 * 125.55884 * 179.97438 * 25 23 22 39 39 H 1.08998 * 110.30800 * 155.01970 * 26 14 13 40 40 H 1.09005 * 110.30294 * 277.17270 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7217 -3.8110 0.0015 11 6 0.3478 -4.0797 0.6257 12 6 -0.1051 -2.7562 -0.0004 13 6 0.3336 -4.1017 2.1631 14 6 0.0928 -5.6080 2.4629 15 1 1.0287 -6.1665 2.4475 16 7 -0.6038 -5.7871 3.7391 17 6 -0.5860 -6.9863 4.3541 18 8 0.0071 -7.9170 3.8511 19 6 -1.3031 -7.1707 5.6666 20 1 -1.1881 -6.2871 6.2944 21 6 -2.7942 -7.4774 5.4277 22 8 -2.9814 -8.7975 6.0153 23 6 -1.8203 -9.2299 6.5196 24 8 -1.6960 -10.3066 7.0690 25 7 -0.8065 -8.3677 6.3626 26 6 -0.8146 -6.0062 1.2709 27 8 -0.3238 -5.2448 0.1532 28 1 -0.4849 0.8401 -0.0004 29 1 2.5574 -4.0345 0.6646 30 1 1.8424 -4.2347 -0.9956 31 1 -0.5307 -2.8645 -0.9980 32 1 -0.7174 -2.1436 0.6612 33 1 -0.4811 -3.4920 2.5537 34 1 1.2916 -3.7731 2.5659 35 1 -1.0779 -5.0428 4.1416 36 1 -3.0170 -7.4989 4.3609 37 1 -3.4202 -6.7420 5.9330 38 1 0.1051 -8.5081 6.6630 39 1 -0.7270 -7.0737 1.0689 40 1 -1.8516 -5.7440 1.4808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053790684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:21 Heat of formation + Delta-G solvation = -78.087626 kcal Electronic energy + Delta-G solvation = -25897.578656 eV Core-core repulsion = 21908.357975 eV Total energy + Delta-G solvation = -3989.220681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23475 -40.39192 -39.32742 -37.50571 -36.44548 -35.13681 -34.84585 -32.17671 -31.24574 -29.68880 -28.19773 -25.82801 -25.22521 -25.04818 -22.83140 -22.23719 -21.92499 -20.97538 -18.89365 -18.67614 -18.50058 -17.51315 -16.95401 -16.74906 -16.22431 -15.70932 -15.33294 -15.13477 -15.04662 -14.78008 -14.71118 -14.43413 -13.97849 -13.80714 -13.53247 -13.21331 -13.04303 -12.60641 -12.30602 -11.75311 -11.54010 -11.37071 -11.21678 -11.10498 -10.99285 -10.89713 -10.80285 -10.73161 -10.51664 -10.09801 -9.75328 -9.66865 -9.45005 -8.91022 -8.82993 -7.00446 -5.87771 -3.20371 1.89277 2.06183 2.30614 2.58244 3.09658 3.31569 3.37710 3.39949 3.49555 3.90350 4.06212 4.09926 4.40744 4.45318 4.53355 4.69837 4.85858 4.88116 4.98256 5.12400 5.17859 5.23987 5.44905 5.69529 5.74306 5.93369 6.08316 6.16520 6.27913 6.32996 6.49921 6.57455 6.74169 6.92189 6.98302 7.11544 7.40492 7.57385 7.61638 7.68733 7.86181 8.93999 9.59696 10.47322 11.29626 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029405 B = 0.002648 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.982321 B =10571.186065 C =10865.198112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.117 3.883 11 C 0.054 3.946 12 C 0.166 3.834 13 C -0.116 4.116 14 C 0.107 3.893 15 H 0.106 0.894 16 N -0.707 5.707 17 C 0.501 3.499 18 O -0.515 6.515 19 C 0.076 3.924 20 H 0.130 0.870 21 C 0.054 3.946 22 O -0.322 6.322 23 C 0.652 3.348 24 O -0.517 6.517 25 N -0.710 5.710 26 C 0.044 3.956 27 O -0.364 6.364 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.406 0.594 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.441 0.559 39 H 0.083 0.917 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.342 -10.364 12.342 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.009 4.009 11 C 0.014 3.986 12 C 0.040 3.960 13 C -0.154 4.154 14 C 0.002 3.998 15 H 0.124 0.876 16 N -0.361 5.361 17 C 0.284 3.716 18 O -0.389 6.389 19 C -0.034 4.034 20 H 0.147 0.853 21 C -0.021 4.021 22 O -0.232 6.232 23 C 0.404 3.596 24 O -0.401 6.401 25 N -0.383 5.383 26 C -0.034 4.034 27 O -0.281 6.281 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.242 0.758 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.285 0.715 39 H 0.102 0.898 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.231 -11.433 11.981 17.367 hybrid contribution 0.774 1.580 0.205 1.771 sum -4.457 -9.853 12.186 16.293 Atomic orbital electron populations 1.69822 1.05016 1.25357 1.56533 1.24795 0.95716 0.97579 1.02298 0.86029 0.78768 0.83540 0.77314 1.20421 1.21662 1.21676 1.19026 0.90278 0.81511 1.43982 0.90005 1.45702 1.02258 0.99218 1.86163 1.22834 0.93719 0.86426 0.97922 1.24230 0.95338 0.86712 0.92350 1.22508 0.88303 0.87289 0.97888 1.22862 1.04422 0.92729 0.95426 1.22911 0.96490 0.98151 0.82229 0.87646 1.45866 1.54597 1.12244 1.23355 1.20567 0.81612 0.83318 0.86111 1.90804 1.42499 1.40060 1.65526 1.22329 0.94750 0.92485 0.93849 0.85271 1.24275 0.92871 0.82957 1.02016 1.87315 1.31230 1.33930 1.70681 1.18413 0.79344 0.83889 0.77927 1.91105 1.82555 1.20148 1.46274 1.45663 1.13515 1.17922 1.61216 1.23658 0.96940 0.96755 0.86079 1.88427 1.74089 1.36277 1.29304 0.93601 0.93457 0.93868 0.94662 0.90503 0.89627 0.88926 0.75828 0.86988 0.85929 0.71498 0.89833 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.93 11.39 55.49 0.63 -25.30 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -5.90 10.70 -15.06 -0.16 -6.06 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -14.78 3.67 -181.30 -0.67 -15.45 16 10 C 0.12 2.35 8.37 -3.24 -0.03 2.32 16 11 C 0.05 0.97 1.68 -90.06 -0.15 0.82 16 12 C 0.17 3.73 7.01 -3.25 -0.02 3.71 16 13 C -0.12 -1.60 5.96 -25.02 -0.15 -1.75 16 14 C 0.11 1.21 3.37 -65.56 -0.22 0.99 16 15 H 0.11 1.34 7.74 -51.93 -0.40 0.93 16 16 N -0.71 -5.27 5.24 -51.52 -0.27 -5.54 16 17 C 0.50 4.17 6.93 -10.98 -0.08 4.09 16 18 O -0.51 -6.71 16.35 5.56 0.09 -6.62 16 19 C 0.08 0.39 4.18 -68.19 -0.29 0.10 16 20 H 0.13 0.17 8.14 -51.92 -0.42 -0.26 16 21 C 0.05 0.25 7.86 37.73 0.30 0.54 16 22 O -0.32 -3.08 11.09 -37.83 -0.42 -3.50 16 23 C 0.65 7.34 9.16 53.71 0.49 7.83 16 24 O -0.52 -7.95 18.04 -19.12 -0.34 -8.29 16 25 N -0.71 -5.55 5.65 -59.35 -0.34 -5.88 16 26 C 0.04 0.56 7.49 38.22 0.29 0.85 16 27 O -0.36 -6.19 11.14 -35.23 -0.39 -6.58 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.05 0.87 7.98 -51.93 -0.41 0.46 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.84 7.05 -51.93 -0.37 1.48 16 33 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 34 H 0.09 1.34 7.83 -51.93 -0.41 0.93 16 35 H 0.41 1.79 8.51 -40.82 -0.35 1.44 16 36 H 0.11 0.46 7.73 -51.93 -0.40 0.06 16 37 H 0.12 0.12 8.14 -51.93 -0.42 -0.31 16 38 H 0.44 2.96 8.96 -40.82 -0.37 2.60 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -36.31 340.30 -6.91 -43.22 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.19 Total: -0.51 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -0.12 Total: 13.15 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.64 Total: -52.17 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.07 Total: -24.99 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.31 -6.91 -43.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053790684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.865 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds