Wall clock time and date at job start Fri Apr 10 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00287 * 2 1 4 4 H 1.48499 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47263 * 299.99736 * 3 2 1 6 6 H 1.48499 * 109.47333 * 59.99774 * 3 2 1 7 7 C 1.38816 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.47711 * 134.43895 * 180.02562 * 9 7 2 11 11 C 1.53277 * 85.91053 * 155.86584 * 10 9 7 12 12 C 1.47714 * 134.43450 * 0.02665 * 9 7 2 13 13 C 1.53768 * 114.70317 * 267.35849 * 11 10 9 14 14 C 1.55461 * 102.01042 * 250.25230 * 13 11 10 15 15 H 1.08997 * 111.14686 * 84.35597 * 14 13 11 16 16 N 1.46501 * 111.10614 * 208.45883 * 14 13 11 17 17 C 1.34778 * 119.99743 * 198.09199 * 16 14 13 18 18 O 1.21276 * 120.00260 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99785 * 180.02562 * 17 16 14 20 20 H 1.09007 * 110.62168 * 321.36921 * 19 17 16 21 21 C 1.54094 * 110.47293 * 84.24728 * 19 17 16 22 22 O 1.45701 * 104.00996 * 118.84916 * 21 19 17 23 23 C 1.33772 * 109.47313 * 359.79086 * 22 21 19 24 24 O 1.21517 * 123.06727 * 180.02562 * 23 22 21 25 25 N 1.34005 * 113.86188 * 359.97438 * 23 22 21 26 26 C 1.55010 * 101.02814 * 326.39765 * 14 13 11 27 27 O 1.42535 * 115.50726 * 140.19504 * 11 10 9 28 28 H 0.97002 * 119.99410 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.80313 * 41.61811 * 10 9 7 30 30 H 1.09005 * 113.79779 * 270.11425 * 10 9 7 31 31 H 1.09000 * 113.79962 * 89.89282 * 12 9 7 32 32 H 1.08995 * 113.80390 * 318.37952 * 12 9 7 33 33 H 1.08996 * 110.92382 * 132.07354 * 13 11 10 34 34 H 1.08997 * 110.92239 * 8.42385 * 13 11 10 35 35 H 0.96996 * 120.00325 * 18.09478 * 16 14 13 36 36 H 1.09005 * 110.69876 * 0.12904 * 21 19 17 37 37 H 1.08994 * 110.45995 * 237.45242 * 21 19 17 38 38 H 0.97001 * 125.55884 * 179.97438 * 25 23 22 39 39 H 1.08998 * 110.30800 * 155.01970 * 26 14 13 40 40 H 1.09005 * 110.30294 * 277.17270 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7217 -3.8110 0.0015 11 6 0.3478 -4.0797 0.6257 12 6 -0.1051 -2.7562 -0.0004 13 6 0.3336 -4.1017 2.1631 14 6 0.0928 -5.6080 2.4629 15 1 1.0287 -6.1665 2.4475 16 7 -0.6038 -5.7871 3.7391 17 6 -0.5860 -6.9863 4.3541 18 8 0.0071 -7.9170 3.8511 19 6 -1.3031 -7.1707 5.6666 20 1 -1.1881 -6.2871 6.2944 21 6 -2.7942 -7.4774 5.4277 22 8 -2.9814 -8.7975 6.0153 23 6 -1.8203 -9.2299 6.5196 24 8 -1.6960 -10.3066 7.0690 25 7 -0.8065 -8.3677 6.3626 26 6 -0.8146 -6.0062 1.2709 27 8 -0.3238 -5.2448 0.1532 28 1 -0.4849 0.8401 -0.0004 29 1 2.5574 -4.0345 0.6646 30 1 1.8424 -4.2347 -0.9956 31 1 -0.5307 -2.8645 -0.9980 32 1 -0.7174 -2.1436 0.6612 33 1 -0.4811 -3.4920 2.5537 34 1 1.2916 -3.7731 2.5659 35 1 -1.0779 -5.0428 4.1416 36 1 -3.0170 -7.4989 4.3609 37 1 -3.4202 -6.7420 5.9330 38 1 0.1051 -8.5081 6.6630 39 1 -0.7270 -7.0737 1.0689 40 1 -1.8516 -5.7440 1.4808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053790684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:21 Heat of formation + Delta-G solvation = -109.670192 kcal Electronic energy + Delta-G solvation = -25898.948179 eV Core-core repulsion = 21908.357975 eV Total energy + Delta-G solvation = -3990.590204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88754 -41.54841 -40.34455 -38.37628 -37.90257 -35.89681 -35.70100 -34.12619 -32.13684 -30.54083 -29.71709 -27.33312 -26.76008 -25.79377 -23.85990 -23.54119 -22.90547 -21.79281 -20.37175 -19.35537 -19.12966 -18.75537 -18.22011 -17.69990 -17.19604 -16.88061 -16.69885 -16.43374 -16.07623 -15.81894 -15.52096 -15.34675 -15.23279 -14.67246 -14.54938 -14.50166 -14.22231 -13.86424 -13.50731 -13.28891 -12.88034 -12.81777 -12.56051 -12.53042 -12.36287 -12.04596 -11.94474 -11.88123 -11.77352 -11.56624 -11.53657 -10.88508 -10.43012 -10.36802 -10.16258 -8.96324 -7.91447 -5.25580 1.23416 1.37294 1.48109 1.49662 1.59278 1.62709 1.89038 2.44331 2.57322 2.89136 3.07689 3.23588 3.32337 3.43876 3.49766 3.68532 3.75118 3.79831 4.03933 4.04614 4.14893 4.45527 4.50931 4.66287 4.70477 4.76295 4.83227 4.90656 4.94376 5.02870 5.14096 5.23007 5.35596 5.50078 5.65086 5.88617 6.07746 6.20185 6.38178 6.89504 6.91053 7.05363 7.58478 8.52784 9.25750 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029405 B = 0.002648 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.982321 B =10571.186065 C =10865.198112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.287 1.287 7 C -0.233 4.233 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.112 3.888 11 C 0.079 3.921 12 C 0.161 3.839 13 C -0.107 4.107 14 C 0.127 3.873 15 H 0.095 0.905 16 N -0.690 5.690 17 C 0.505 3.495 18 O -0.565 6.565 19 C 0.085 3.915 20 H 0.183 0.817 21 C 0.049 3.951 22 O -0.339 6.339 23 C 0.648 3.352 24 O -0.572 6.572 25 N -0.702 5.702 26 C 0.039 3.961 27 O -0.383 6.383 28 H 0.250 0.750 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.007 0.993 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.426 0.574 36 H 0.117 0.883 37 H 0.170 0.830 38 H 0.445 0.555 39 H 0.086 0.914 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 -9.613 14.032 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.214 1.214 7 C -0.361 4.361 8 H 0.103 0.897 9 N -0.357 5.357 10 C -0.013 4.013 11 C 0.038 3.962 12 C 0.035 3.965 13 C -0.145 4.145 14 C 0.021 3.979 15 H 0.113 0.887 16 N -0.344 5.344 17 C 0.290 3.710 18 O -0.442 6.442 19 C -0.024 4.024 20 H 0.200 0.800 21 C -0.025 4.025 22 O -0.249 6.249 23 C 0.401 3.599 24 O -0.460 6.460 25 N -0.374 5.374 26 C -0.039 4.039 27 O -0.301 6.301 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.265 0.735 36 H 0.135 0.865 37 H 0.188 0.812 38 H 0.289 0.711 39 H 0.104 0.896 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.410 -10.648 13.676 18.157 hybrid contribution 0.802 1.330 -0.436 1.613 sum -4.608 -9.318 13.240 16.833 Atomic orbital electron populations 1.69991 1.06319 1.25700 1.57790 1.25591 0.96580 1.00674 1.02647 0.85013 0.78154 0.79381 0.76754 1.19148 1.22375 1.21353 1.19388 0.90785 0.82768 1.43141 0.89718 1.46003 1.03271 1.00297 1.86124 1.22978 0.95911 0.84172 0.98271 1.23723 0.92945 0.85030 0.94534 1.22410 0.87421 0.90114 0.96525 1.22742 1.04930 0.94703 0.92093 1.22467 0.96181 0.95811 0.83481 0.88698 1.45617 1.54001 1.12959 1.21855 1.21111 0.80730 0.82448 0.86717 1.90805 1.44766 1.41689 1.66939 1.22648 0.94255 0.93143 0.92374 0.79974 1.24797 0.93077 0.81700 1.02959 1.87280 1.30581 1.36409 1.70601 1.18575 0.80168 0.83571 0.77537 1.91050 1.83619 1.22565 1.48811 1.45679 1.13153 1.18234 1.60323 1.23899 0.98186 0.96351 0.85446 1.88397 1.74085 1.36040 1.31575 0.94077 0.91457 0.94546 0.97549 0.92227 0.88270 0.89155 0.73468 0.86498 0.81230 0.71058 0.89561 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.24 11.39 21.65 0.25 -54.00 16 2 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 3 Si 0.98 43.51 29.55 68.60 2.03 45.54 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.23 -12.48 10.70 84.04 0.90 -11.58 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -30.96 3.67 -732.83 -2.69 -33.65 16 10 C 0.11 4.45 8.37 86.24 0.72 5.17 16 11 C 0.08 2.75 1.68 -10.32 -0.02 2.73 16 12 C 0.16 7.40 7.01 86.23 0.60 8.00 16 13 C -0.11 -2.70 5.96 31.70 0.19 -2.51 16 14 C 0.13 2.52 3.37 46.53 0.16 2.68 16 15 H 0.09 2.20 7.74 -2.39 -0.02 2.18 16 16 N -0.69 -7.58 5.24 -435.30 -2.28 -9.86 16 17 C 0.51 6.73 6.93 87.66 0.61 7.34 16 18 O -0.56 -13.69 16.35 -3.02 -0.05 -13.74 16 19 C 0.08 0.51 4.18 44.50 0.19 0.70 16 20 H 0.18 -0.70 8.14 -2.38 -0.02 -0.72 16 21 C 0.05 0.25 7.86 72.35 0.57 0.81 16 22 O -0.34 -5.84 11.09 -47.32 -0.52 -6.37 16 23 C 0.65 14.01 9.16 129.91 1.19 15.20 16 24 O -0.57 -17.97 18.04 19.63 0.35 -17.62 16 25 N -0.70 -9.46 5.65 -573.39 -3.24 -12.70 16 26 C 0.04 0.90 7.49 72.67 0.54 1.45 16 27 O -0.38 -12.68 11.14 -148.98 -1.66 -14.34 16 28 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.07 2.40 7.98 -2.39 -0.02 2.38 16 30 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 2.91 7.05 -2.39 -0.02 2.90 16 33 H 0.10 2.27 7.85 -2.39 -0.02 2.26 16 34 H 0.09 2.40 7.83 -2.39 -0.02 2.38 16 35 H 0.43 1.57 8.51 -92.71 -0.79 0.78 16 36 H 0.12 0.51 7.73 -2.38 -0.02 0.49 16 37 H 0.17 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.44 5.27 8.96 -92.71 -0.83 4.43 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -83.29 340.30 -2.22 -85.51 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -0.52 Total: 4.09 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 6.12 Total: 27.13 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -7.97 Total: -110.21 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -1.88 Total: -52.06 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -83.29 -2.22 -85.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053790684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.157 kcal (2) G-P(sol) polarization free energy of solvation -83.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds