Wall clock time and date at job start Fri Apr 10 2020 18:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81405 * 102.99665 * 2 1 4 4 C 1.50703 * 109.46711 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00208 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99769 * 179.97438 * 4 3 2 7 7 C 1.47459 * 125.62876 * 0.02562 * 6 4 3 8 8 C 1.54911 * 104.81307 * 204.04809 * 7 6 4 9 9 H 1.09004 * 110.99923 * 81.13240 * 8 7 6 10 10 N 1.46490 * 111.00591 * 204.95079 * 8 7 6 11 11 C 1.36935 * 120.00121 * 270.41461 * 10 8 7 12 12 H 1.07997 * 120.00139 * 0.02562 * 11 10 8 13 13 C 1.38816 * 120.00401 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99569 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00172 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47055 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.46653 * 299.99639 * 15 13 11 18 18 H 1.48495 * 109.47483 * 60.00002 * 15 13 11 19 19 C 1.55160 * 101.61287 * 323.04762 * 8 7 6 20 20 H 1.09004 * 110.71555 * 154.02706 * 19 8 7 21 21 N 1.46507 * 110.71667 * 277.11386 * 19 8 7 22 22 C 1.35305 * 125.86820 * 84.72095 * 21 19 8 23 23 C 1.35344 * 106.17931 * 179.90395 * 22 21 19 24 24 N 1.33779 * 106.49480 * 0.35154 * 23 22 21 25 25 N 1.28636 * 108.88157 * 359.77432 * 24 23 22 26 26 C 1.47024 * 125.64525 * 179.97438 * 6 4 3 27 27 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47218 * 300.00394 * 1 2 3 29 29 H 1.08997 * 109.46722 * 59.99852 * 1 2 3 30 30 H 1.08991 * 109.47274 * 60.00120 * 3 2 1 31 31 H 1.09001 * 109.47315 * 299.99518 * 3 2 1 32 32 H 1.09008 * 110.35088 * 85.23441 * 7 6 4 33 33 H 1.09002 * 110.40628 * 322.89751 * 7 6 4 34 34 H 0.97000 * 120.00577 * 90.42061 * 10 8 7 35 35 H 0.97001 * 119.99885 * 359.97438 * 14 13 11 36 36 H 1.08001 * 126.91140 * 0.02562 * 22 21 19 37 37 H 1.08000 * 126.75738 * 180.12170 * 23 22 21 38 38 H 1.09003 * 109.88172 * 59.57732 * 26 6 4 39 39 H 1.08994 * 109.88209 * 298.41444 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9374 -0.0006 5 8 4.4404 0.9621 -0.0006 6 7 4.2575 3.1732 -0.0013 7 6 3.5015 4.4392 -0.0009 8 6 4.4721 5.4804 -0.6121 9 1 4.4735 5.4212 -1.7005 10 7 4.1404 6.8347 -0.1629 11 6 3.2537 7.5951 -0.8775 12 1 2.7986 7.1962 -1.7721 13 6 2.9397 8.8786 -0.4523 14 7 3.4947 9.3649 0.6377 15 14 1.7296 9.9157 -1.4267 16 1 1.5674 11.2368 -0.7683 17 1 2.2435 10.1105 -2.8063 18 1 0.4164 9.2244 -1.4807 19 6 5.8335 5.0185 -0.0283 20 1 6.6546 5.3235 -0.6772 21 7 6.0223 5.5453 1.3256 22 6 5.5557 4.9862 2.4660 23 6 5.9583 5.7943 3.4744 24 7 6.6359 6.7994 2.9082 25 7 6.6558 6.6224 1.6343 26 6 5.6950 3.4818 -0.0014 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8031 2.2371 0.8899 31 1 1.8031 2.2372 -0.8900 32 1 3.2350 4.7213 1.0178 33 1 2.6066 4.3477 -0.6164 34 1 4.5488 7.1929 0.6406 35 1 4.1228 8.8263 1.1439 36 1 4.9798 4.0769 2.5542 37 1 5.7668 5.6571 4.5283 38 1 6.1664 3.0517 -0.8851 39 1 6.1597 3.0833 0.9003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070140469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:24 Heat of formation + Delta-G solvation = 103.981219 kcal Electronic energy + Delta-G solvation = -24159.320100 eV Core-core repulsion = 20653.040139 eV Total energy + Delta-G solvation = -3506.279961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.07494 -40.19178 -37.98568 -34.68676 -33.83107 -31.47250 -31.02927 -30.62802 -29.27568 -28.59546 -27.70678 -24.38860 -23.62704 -22.41672 -21.91518 -20.40302 -19.66763 -18.01006 -17.62797 -17.29282 -16.49400 -16.12771 -16.08326 -15.22041 -14.87484 -14.61864 -14.50321 -14.04778 -13.96341 -13.77574 -13.65053 -13.57016 -13.31234 -13.02980 -12.52073 -12.42982 -12.36048 -11.87778 -11.47586 -11.33779 -10.88596 -10.87307 -10.62334 -10.23615 -10.21183 -10.12650 -9.85515 -9.41266 -9.24354 -9.09786 -8.86112 -7.89902 -7.40012 -6.31384 -3.39117 1.19872 1.86201 2.27369 2.36216 2.46969 2.77307 2.89701 3.38941 3.42202 3.60709 3.91726 4.31452 4.43060 4.53503 4.67600 4.72936 4.78169 4.85789 4.87183 4.96899 5.02521 5.15017 5.24441 5.36009 5.42074 5.42676 5.46311 5.48052 5.65280 5.79822 5.92423 6.00035 6.16492 6.39181 6.82261 7.20985 7.52926 7.87582 8.52130 8.82263 8.90014 9.78086 9.86587 11.14520 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.004801 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.787685 B = 5830.295088 C = 7612.016779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.189 6.189 3 C -0.122 4.122 4 C 0.549 3.451 5 O -0.524 6.524 6 N -0.614 5.614 7 C 0.064 3.936 8 C 0.174 3.826 9 H 0.094 0.906 10 N -0.716 5.716 11 C -0.359 4.359 12 H 0.070 0.930 13 C -0.031 4.031 14 N -0.925 5.925 15 Si 1.082 2.918 16 H -0.283 1.283 17 H -0.292 1.292 18 H -0.294 1.294 19 C 0.112 3.888 20 H 0.134 0.866 21 N -0.272 5.272 22 C -0.050 4.050 23 C -0.054 4.054 24 N -0.271 5.271 25 N -0.069 5.069 26 C 0.109 3.891 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.377 0.623 35 H 0.260 0.740 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.097 0.903 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 -16.108 -0.550 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.036 5.964 3 C -0.272 4.272 4 C 0.335 3.665 5 O -0.400 6.400 6 N -0.350 5.350 7 C -0.062 4.062 8 C 0.058 3.942 9 H 0.111 0.889 10 N -0.358 5.358 11 C -0.489 4.489 12 H 0.088 0.912 13 C -0.231 4.231 14 N -0.567 5.567 15 Si 0.911 3.089 16 H -0.208 1.208 17 H -0.219 1.219 18 H -0.221 1.221 19 C 0.008 3.992 20 H 0.152 0.848 21 N -0.065 5.065 22 C -0.201 4.201 23 C -0.211 4.211 24 N -0.136 5.136 25 N -0.049 5.049 26 C -0.015 4.015 27 H 0.122 0.878 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.213 0.787 35 H 0.071 0.929 36 H 0.196 0.804 37 H 0.203 0.797 38 H 0.115 0.885 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.884 -14.874 -1.341 15.053 hybrid contribution -0.886 -1.272 0.676 1.691 sum -2.771 -16.146 -0.665 16.395 Atomic orbital electron populations 1.23537 0.95631 1.06688 1.05112 1.87409 1.04840 1.06133 1.98057 1.23482 0.97185 0.99052 1.07531 1.19279 0.88883 0.81668 0.76623 1.90753 1.62055 1.37686 1.49469 1.48412 1.07241 1.05903 1.73424 1.23735 0.97565 0.82439 1.02487 1.21590 0.87809 0.86580 0.98179 0.88872 1.42359 1.52659 1.09718 1.31016 1.19965 1.21524 0.98743 1.08648 0.91225 1.25910 1.02555 0.95346 0.99265 1.70863 1.30085 1.39313 1.16415 0.83241 0.74727 0.76330 0.74594 1.20791 1.21923 1.22082 1.23215 1.03577 0.93006 0.79418 0.84811 1.47294 1.34630 1.16819 1.07805 1.23439 1.06939 1.03907 0.85825 1.23518 1.02914 0.93772 1.00911 1.75141 1.17947 1.21547 0.98996 1.78416 1.14728 1.02031 1.09718 1.22150 0.82995 0.92110 1.04265 0.87766 0.90389 0.90365 0.87063 0.86945 0.90874 0.89921 0.78725 0.92863 0.80374 0.79747 0.88503 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 10.76 101.05 1.09 0.07 16 2 S -0.19 -2.12 21.52 -107.50 -2.31 -4.43 16 3 C -0.12 -1.28 5.43 36.01 0.20 -1.09 16 4 C 0.55 7.19 7.87 -10.98 -0.09 7.10 16 5 O -0.52 -8.51 16.19 5.56 0.09 -8.42 16 6 N -0.61 -7.55 3.33 -170.49 -0.57 -8.12 16 7 C 0.06 0.88 5.97 -2.51 -0.01 0.87 16 8 C 0.17 2.85 3.56 -65.78 -0.23 2.62 16 9 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 10 N -0.72 -16.15 5.21 -51.35 -0.27 -16.42 16 11 C -0.36 -9.19 9.97 -15.06 -0.15 -9.34 16 12 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 13 C -0.03 -0.84 5.50 -17.43 -0.10 -0.93 16 14 N -0.92 -27.97 13.70 55.49 0.76 -27.21 16 15 Si 1.08 24.43 29.92 -169.99 -5.09 19.34 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.11 1.56 3.97 -66.09 -0.26 1.30 16 20 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 21 N -0.27 -4.41 2.40 -52.98 -0.13 -4.54 16 22 C -0.05 -0.73 9.34 -17.05 -0.16 -0.89 16 23 C -0.05 -0.84 12.05 -17.74 -0.21 -1.05 16 24 N -0.27 -5.26 12.41 30.23 0.38 -4.89 16 25 N -0.07 -1.37 12.22 60.35 0.74 -0.63 16 26 C 0.11 1.28 5.90 -3.07 -0.02 1.26 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 1.03 7.85 -51.92 -0.41 0.62 16 32 H 0.07 1.11 7.58 -51.92 -0.39 0.72 16 33 H 0.08 1.08 7.48 -51.93 -0.39 0.69 16 34 H 0.38 9.25 4.76 -40.82 -0.19 9.05 16 35 H 0.26 8.00 6.77 -40.82 -0.28 7.72 16 36 H 0.18 2.14 7.71 -52.49 -0.40 1.74 16 37 H 0.19 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.95 7.17 -51.93 -0.37 0.58 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -33.89 340.72 -6.24 -40.13 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.02 Total: 10.14 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 0.05 Total: -0.09 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.91 Total: -61.79 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.09 Total: 19.34 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.31 Total: -4.43 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.89 -6.24 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070140469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.108 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds