Wall clock time and date at job start Fri Apr 10 2020 18:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81405 * 102.99665 * 2 1 4 4 C 1.50703 * 109.46711 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00208 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99769 * 179.97438 * 4 3 2 7 7 C 1.47459 * 125.62876 * 0.02562 * 6 4 3 8 8 C 1.54911 * 104.81307 * 204.04809 * 7 6 4 9 9 H 1.09004 * 110.99923 * 81.13240 * 8 7 6 10 10 N 1.46490 * 111.00591 * 204.95079 * 8 7 6 11 11 C 1.36935 * 120.00121 * 270.41461 * 10 8 7 12 12 H 1.07997 * 120.00139 * 0.02562 * 11 10 8 13 13 C 1.38816 * 120.00401 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99569 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00172 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47055 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.46653 * 299.99639 * 15 13 11 18 18 H 1.48495 * 109.47483 * 60.00002 * 15 13 11 19 19 C 1.55160 * 101.61287 * 323.04762 * 8 7 6 20 20 H 1.09004 * 110.71555 * 154.02706 * 19 8 7 21 21 N 1.46507 * 110.71667 * 277.11386 * 19 8 7 22 22 C 1.35305 * 125.86820 * 84.72095 * 21 19 8 23 23 C 1.35344 * 106.17931 * 179.90395 * 22 21 19 24 24 N 1.33779 * 106.49480 * 0.35154 * 23 22 21 25 25 N 1.28636 * 108.88157 * 359.77432 * 24 23 22 26 26 C 1.47024 * 125.64525 * 179.97438 * 6 4 3 27 27 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47218 * 300.00394 * 1 2 3 29 29 H 1.08997 * 109.46722 * 59.99852 * 1 2 3 30 30 H 1.08991 * 109.47274 * 60.00120 * 3 2 1 31 31 H 1.09001 * 109.47315 * 299.99518 * 3 2 1 32 32 H 1.09008 * 110.35088 * 85.23441 * 7 6 4 33 33 H 1.09002 * 110.40628 * 322.89751 * 7 6 4 34 34 H 0.97000 * 120.00577 * 90.42061 * 10 8 7 35 35 H 0.97001 * 119.99885 * 359.97438 * 14 13 11 36 36 H 1.08001 * 126.91140 * 0.02562 * 22 21 19 37 37 H 1.08000 * 126.75738 * 180.12170 * 23 22 21 38 38 H 1.09003 * 109.88172 * 59.57732 * 26 6 4 39 39 H 1.08994 * 109.88209 * 298.41444 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9374 -0.0006 5 8 4.4404 0.9621 -0.0006 6 7 4.2575 3.1732 -0.0013 7 6 3.5015 4.4392 -0.0009 8 6 4.4721 5.4804 -0.6121 9 1 4.4735 5.4212 -1.7005 10 7 4.1404 6.8347 -0.1629 11 6 3.2537 7.5951 -0.8775 12 1 2.7986 7.1962 -1.7721 13 6 2.9397 8.8786 -0.4523 14 7 3.4947 9.3649 0.6377 15 14 1.7296 9.9157 -1.4267 16 1 1.5674 11.2368 -0.7683 17 1 2.2435 10.1105 -2.8063 18 1 0.4164 9.2244 -1.4807 19 6 5.8335 5.0185 -0.0283 20 1 6.6546 5.3235 -0.6772 21 7 6.0223 5.5453 1.3256 22 6 5.5557 4.9862 2.4660 23 6 5.9583 5.7943 3.4744 24 7 6.6359 6.7994 2.9082 25 7 6.6558 6.6224 1.6343 26 6 5.6950 3.4818 -0.0014 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8031 2.2371 0.8899 31 1 1.8031 2.2372 -0.8900 32 1 3.2350 4.7213 1.0178 33 1 2.6066 4.3477 -0.6164 34 1 4.5488 7.1929 0.6406 35 1 4.1228 8.8263 1.1439 36 1 4.9798 4.0769 2.5542 37 1 5.7668 5.6571 4.5283 38 1 6.1664 3.0517 -0.8851 39 1 6.1597 3.0833 0.9003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070140469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:24 Heat of formation + Delta-G solvation = 79.921883 kcal Electronic energy + Delta-G solvation = -24160.363392 eV Core-core repulsion = 20653.040139 eV Total energy + Delta-G solvation = -3507.323253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.35375 -41.30150 -39.19394 -36.35891 -35.10068 -33.07202 -32.20742 -31.82097 -30.12257 -29.46658 -29.07622 -25.90274 -25.11268 -23.75220 -23.20817 -21.66637 -20.72191 -19.65963 -18.87421 -18.50996 -17.56545 -17.35573 -17.12328 -16.38386 -16.07700 -15.98377 -15.87242 -15.47631 -15.11274 -14.84409 -14.76182 -14.51325 -14.32992 -14.08392 -13.64740 -13.40802 -13.22644 -13.12890 -12.83491 -12.66250 -12.57908 -12.50073 -11.94971 -11.91648 -11.41172 -11.35794 -11.13909 -10.99250 -10.93068 -10.36781 -9.96571 -9.28521 -8.72700 -8.41790 -5.42537 0.42556 0.60617 1.27914 1.37435 1.58586 1.59038 1.61011 1.68156 1.74160 1.83942 2.65656 2.84491 3.16088 3.39571 3.42823 3.54637 3.60509 3.85546 3.92853 3.98552 4.08327 4.11104 4.20153 4.25242 4.36223 4.37472 4.41151 4.46648 4.64105 4.76614 4.85196 4.92149 4.92364 5.21321 5.54313 5.61453 6.15581 6.41403 6.85384 6.96387 7.50907 7.86009 7.96399 9.06863 Molecular weight = 311.12amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.004801 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.787685 B = 5830.295088 C = 7612.016779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.252 6.252 3 C -0.111 4.111 4 C 0.550 3.450 5 O -0.555 6.555 6 N -0.606 5.606 7 C 0.083 3.917 8 C 0.163 3.837 9 H 0.103 0.897 10 N -0.736 5.736 11 C -0.338 4.338 12 H 0.084 0.916 13 C -0.098 4.098 14 N -0.970 5.970 15 Si 1.127 2.873 16 H -0.302 1.302 17 H -0.276 1.276 18 H -0.270 1.270 19 C 0.114 3.886 20 H 0.143 0.857 21 N -0.268 5.268 22 C -0.039 4.039 23 C -0.060 4.060 24 N -0.309 5.309 25 N -0.114 5.114 26 C 0.117 3.883 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.365 0.635 35 H 0.240 0.760 36 H 0.208 0.792 37 H 0.218 0.782 38 H 0.117 0.883 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 -18.104 -1.512 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.028 6.028 3 C -0.261 4.261 4 C 0.339 3.661 5 O -0.433 6.433 6 N -0.341 5.341 7 C -0.043 4.043 8 C 0.050 3.950 9 H 0.121 0.879 10 N -0.377 5.377 11 C -0.469 4.469 12 H 0.101 0.899 13 C -0.290 4.290 14 N -0.617 5.617 15 Si 0.952 3.048 16 H -0.228 1.228 17 H -0.202 1.202 18 H -0.196 1.196 19 C 0.011 3.989 20 H 0.161 0.839 21 N -0.062 5.062 22 C -0.191 4.191 23 C -0.218 4.218 24 N -0.174 5.174 25 N -0.093 5.093 26 C -0.007 4.007 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.199 0.801 35 H 0.051 0.949 36 H 0.224 0.776 37 H 0.234 0.766 38 H 0.135 0.865 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.537 -16.936 -2.351 17.460 hybrid contribution -0.369 -0.823 0.951 1.311 sum -3.906 -17.759 -1.400 18.238 Atomic orbital electron populations 1.23571 0.91643 1.07812 1.06194 1.87635 1.09306 1.07628 1.98243 1.23447 0.95215 0.98401 1.09081 1.19658 0.89860 0.80996 0.75626 1.90752 1.63086 1.38532 1.50903 1.48306 1.07201 1.05328 1.73247 1.23286 0.97096 0.82024 1.01861 1.21869 0.89593 0.84564 0.98963 0.87889 1.42510 1.52593 1.11971 1.30651 1.20377 1.19953 0.98448 1.08116 0.89858 1.27227 1.04464 0.97583 0.99721 1.71001 1.32255 1.39769 1.18641 0.82651 0.74074 0.74251 0.73867 1.22832 1.20233 1.19608 1.23315 1.02539 0.94338 0.78751 0.83929 1.47456 1.33888 1.16070 1.08819 1.23896 1.05953 1.04210 0.85010 1.24174 1.02027 0.92813 1.02775 1.75076 1.19548 1.23332 0.99413 1.78354 1.16960 1.03826 1.10114 1.22177 0.82925 0.90046 1.05575 0.86644 0.89300 0.89219 0.85463 0.85205 0.91875 0.88472 0.80081 0.94931 0.77569 0.76551 0.86485 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 10.76 113.37 1.22 -0.20 16 2 S -0.25 -5.16 21.52 -56.49 -1.22 -6.37 16 3 C -0.11 -2.00 5.43 71.24 0.39 -1.61 16 4 C 0.55 12.89 7.87 87.66 0.69 13.58 16 5 O -0.55 -16.90 16.19 -3.04 -0.05 -16.95 16 6 N -0.61 -13.05 3.33 -811.69 -2.70 -15.75 16 7 C 0.08 2.07 5.97 86.85 0.52 2.58 16 8 C 0.16 5.03 3.56 46.39 0.17 5.20 16 9 H 0.10 3.01 8.11 -2.38 -0.02 2.99 16 10 N -0.74 -32.81 5.21 -316.38 -1.65 -34.46 16 11 C -0.34 -17.01 9.97 84.03 0.84 -16.18 16 12 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 13 C -0.10 -5.39 5.50 84.86 0.47 -4.92 16 14 N -0.97 -60.33 13.70 21.65 0.30 -60.03 16 15 Si 1.13 48.98 29.92 68.60 2.05 51.03 16 16 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 C 0.11 3.00 3.97 46.18 0.18 3.18 16 20 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 21 N -0.27 -8.53 2.40 -321.54 -0.77 -9.30 16 22 C -0.04 -1.09 9.34 83.49 0.78 -0.31 16 23 C -0.06 -1.83 12.05 83.73 1.01 -0.82 16 24 N -0.31 -12.26 12.41 -58.26 -0.72 -12.98 16 25 N -0.11 -4.58 12.22 37.02 0.45 -4.12 16 26 C 0.12 2.41 5.90 86.73 0.51 2.93 16 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.13 1.88 7.85 -2.39 -0.02 1.87 16 32 H 0.06 1.76 7.58 -2.38 -0.02 1.74 16 33 H 0.10 2.18 7.48 -2.39 -0.02 2.16 16 34 H 0.37 18.19 4.76 -92.71 -0.44 17.75 16 35 H 0.24 15.41 6.77 -92.71 -0.63 14.78 16 36 H 0.21 4.37 7.71 -2.91 -0.02 4.35 16 37 H 0.22 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.09 1.80 7.17 -2.39 -0.02 1.78 16 Total: -1.00 -76.17 340.72 3.23 -72.94 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.77 Total: 32.57 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 6.77 Total: 3.43 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -5.10 Total: -136.65 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.03 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -1.22 Total: -6.37 kcal Total: -76.17 3.23 -72.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070140469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.863 kcal (2) G-P(sol) polarization free energy of solvation -76.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds