Wall clock time and date at job start Fri Apr 10 2020 18:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35353 * 117.00021 * 2 1 4 4 N 1.30553 * 125.44686 * 180.33697 * 3 2 1 5 5 C 1.36333 * 108.38093 * 180.13295 * 4 3 2 6 6 C 1.47366 * 126.41146 * 179.82362 * 5 4 3 7 7 O 1.21616 * 120.00019 * 179.69013 * 6 5 4 8 8 N 1.34775 * 119.99930 * 359.69599 * 6 5 4 9 9 C 1.46504 * 119.99904 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.88589 * 34.29587 * 9 8 6 11 11 C 1.54909 * 111.00462 * 270.41314 * 9 8 6 12 12 N 1.47523 * 104.78433 * 204.90016 * 11 9 8 13 13 C 1.36938 * 125.63741 * 204.08423 * 12 11 9 14 14 H 1.07999 * 120.00108 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99955 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99717 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47580 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47038 * 120.00304 * 17 15 13 20 20 H 1.48498 * 109.47218 * 240.00183 * 17 15 13 21 21 C 1.47022 * 108.71559 * 24.12363 * 12 11 9 22 22 C 1.54330 * 107.27093 * 358.93837 * 21 12 11 23 23 H 1.09005 * 110.71759 * 96.17175 * 22 21 12 24 24 O 1.42893 * 110.87255 * 219.37056 * 22 21 12 25 25 C 1.42892 * 114.00422 * 263.61160 * 24 22 21 26 26 C 1.35915 * 107.17740 * 359.56552 * 5 4 3 27 27 O 1.34207 * 125.44679 * 359.97438 * 3 2 1 28 28 H 1.08991 * 109.46992 * 299.99669 * 1 2 3 29 29 H 1.09000 * 109.47521 * 59.99634 * 1 2 3 30 30 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 31 31 H 0.96994 * 120.00442 * 359.97438 * 8 6 5 32 32 H 1.09001 * 110.36668 * 323.71805 * 11 9 8 33 33 H 1.09004 * 110.36307 * 86.03933 * 11 9 8 34 34 H 0.97002 * 120.00021 * 180.02562 * 16 15 13 35 35 H 1.08998 * 109.88478 * 239.52488 * 21 12 11 36 36 H 1.08997 * 109.88284 * 118.35719 * 21 12 11 37 37 H 1.08998 * 109.47266 * 180.02562 * 25 24 22 38 38 H 1.09001 * 109.47013 * 300.00105 * 25 24 22 39 39 H 1.09004 * 109.47480 * 59.99952 * 25 24 22 40 40 H 1.07991 * 126.46192 * 180.26144 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3978 -0.0063 5 6 3.5700 2.7406 -0.0009 6 6 4.8891 3.3977 -0.0013 7 8 4.9639 4.6115 -0.0019 8 7 6.0127 2.6533 -0.0013 9 6 7.3241 3.3065 -0.0023 10 1 7.2971 4.2332 0.5709 11 6 7.8158 3.5624 -1.4488 12 7 9.2859 3.6228 -1.3415 13 6 10.1238 4.2660 -2.2130 14 1 9.7176 4.7878 -3.0669 15 6 11.4952 4.2474 -1.9989 16 7 11.9902 3.6110 -0.9586 17 14 12.6381 5.1242 -3.1882 18 1 11.8384 5.7582 -4.2669 19 1 13.4029 6.1687 -2.4605 20 1 13.5816 4.1433 -3.7822 21 6 9.7026 2.8775 -0.1447 22 6 8.4216 2.3512 0.5364 23 1 8.2196 1.3231 0.2357 24 8 8.5240 2.4492 1.9582 25 6 8.9458 1.2417 2.5953 26 6 2.3603 3.3601 -0.0009 27 8 1.4227 2.3959 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 5.9532 1.6852 -0.0006 32 1 7.5164 2.7426 -2.1019 33 1 7.4227 4.5083 -1.8214 34 1 12.9485 3.5983 -0.8088 35 1 10.2392 3.5387 0.5357 36 1 10.3400 2.0413 -0.4320 37 1 8.9981 1.3984 3.6727 38 1 8.2313 0.4477 2.3783 39 1 9.9293 0.9577 2.2209 40 1 2.1848 4.4256 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081989778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:45 Heat of formation + Delta-G solvation = -75.984697 kcal Electronic energy + Delta-G solvation = -25797.606502 eV Core-core repulsion = 21808.477011 eV Total energy + Delta-G solvation = -3989.129491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.54809 -41.06462 -39.85433 -39.51748 -37.51521 -36.11266 -35.59660 -33.64849 -31.30673 -30.52275 -28.95531 -28.28671 -27.53555 -26.39637 -25.04138 -23.50573 -22.38912 -22.08216 -21.57531 -20.15193 -19.06087 -18.58382 -18.46486 -17.82109 -17.43725 -17.21975 -16.53919 -16.36156 -16.24421 -15.86340 -15.81788 -15.75605 -15.25321 -15.03463 -14.66315 -14.39246 -14.05511 -13.61558 -13.26030 -13.08177 -13.00234 -12.93383 -12.77707 -12.59161 -12.32928 -12.08560 -12.02576 -11.93772 -11.86349 -11.66342 -11.44938 -10.77672 -10.62906 -10.19936 -9.76542 -8.96853 -7.86496 -5.24886 0.01140 0.87125 0.90165 1.46969 1.48683 1.59059 1.66448 1.98354 2.15076 2.47139 2.75494 3.27669 3.33795 3.50385 3.73539 3.83304 3.91175 4.05229 4.14145 4.22555 4.27458 4.34695 4.41932 4.44793 4.59157 4.64405 4.66271 4.68334 4.82483 4.86408 4.94793 5.29403 5.36367 5.42627 5.60574 5.65949 6.13464 6.25034 6.29803 6.54722 7.01791 7.05675 7.69740 8.32744 9.23464 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.003045 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.366775 B = 9192.845374 C = 9872.336943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.255 6.255 3 C 0.384 3.616 4 N -0.484 5.484 5 C -0.074 4.074 6 C 0.605 3.395 7 O -0.562 6.562 8 N -0.688 5.688 9 C 0.149 3.851 10 H 0.085 0.915 11 C 0.132 3.868 12 N -0.621 5.621 13 C -0.245 4.245 14 H 0.085 0.915 15 C -0.064 4.064 16 N -0.950 5.950 17 Si 0.983 3.017 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.289 1.289 21 C 0.177 3.823 22 C 0.076 3.924 23 H 0.091 0.909 24 O -0.396 6.396 25 C 0.026 3.974 26 C 0.034 3.966 27 O -0.213 6.213 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.416 0.584 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.249 0.751 35 H 0.021 0.979 36 H 0.023 0.977 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.119 -8.843 4.670 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.163 6.163 3 C 0.137 3.863 4 N -0.230 5.230 5 C -0.192 4.192 6 C 0.391 3.609 7 O -0.441 6.441 8 N -0.338 5.338 9 C 0.043 3.957 10 H 0.103 0.897 11 C 0.005 3.995 12 N -0.349 5.349 13 C -0.373 4.373 14 H 0.103 0.897 15 C -0.257 4.257 16 N -0.598 5.598 17 Si 0.811 3.189 18 H -0.190 1.190 19 H -0.219 1.219 20 H -0.215 1.215 21 C 0.051 3.949 22 C 0.016 3.984 23 H 0.109 0.891 24 O -0.314 6.314 25 C -0.070 4.070 26 C -0.038 4.038 27 O -0.104 6.104 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -24.475 -8.544 4.745 26.354 hybrid contribution 0.514 0.273 -0.570 0.815 sum -23.961 -8.271 4.175 25.690 Atomic orbital electron populations 1.23711 0.72568 1.07780 1.03947 1.86423 1.26179 1.14775 1.88950 1.23421 0.85422 0.80362 0.97089 1.70993 1.11279 1.15881 1.24863 1.21353 0.95380 0.88832 1.13622 1.16914 0.82614 0.85701 0.75639 1.90835 1.87153 1.13919 1.52205 1.45552 1.04198 1.10919 1.73098 1.21968 0.80819 0.96399 0.96521 0.89662 1.21936 0.84076 0.99276 0.94215 1.44554 1.01058 1.61592 1.27698 1.19502 0.88053 1.25988 1.03789 0.89728 1.25699 0.98203 1.01669 1.00113 1.70168 1.11491 1.47805 1.30374 0.84947 0.78503 0.77429 0.78040 1.18988 1.21902 1.21549 1.21272 0.91916 0.94278 0.87461 1.23491 0.94678 0.98768 0.81429 0.89090 1.87875 1.88409 1.36805 1.18359 1.22993 0.98869 0.86311 0.98797 1.25564 0.83828 0.94807 0.99638 1.84434 1.38943 1.15481 1.71534 0.90403 0.90498 0.83647 0.74667 0.94351 0.93838 0.94190 0.96056 0.95918 0.87919 0.92139 0.94399 0.71661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.73 113.37 1.22 1.29 16 2 O -0.26 -4.08 10.55 -64.22 -0.68 -4.76 16 3 C 0.38 7.81 8.98 130.43 1.17 8.98 16 4 N -0.48 -12.43 11.10 -419.38 -4.65 -17.08 16 5 C -0.07 -1.91 6.99 40.31 0.28 -1.63 16 6 C 0.60 19.48 7.81 86.65 0.68 20.16 16 7 O -0.56 -21.21 16.58 -4.08 -0.07 -21.28 16 8 N -0.69 -22.28 5.21 -439.26 -2.29 -24.57 16 9 C 0.15 5.88 3.09 46.38 0.14 6.03 16 10 H 0.09 3.79 7.63 -2.39 -0.02 3.78 16 11 C 0.13 5.85 6.94 86.84 0.60 6.45 16 12 N -0.62 -33.44 3.40 -691.72 -2.35 -35.79 16 13 C -0.24 -14.17 10.28 84.03 0.86 -13.31 16 14 H 0.08 4.70 7.83 -2.91 -0.02 4.67 16 15 C -0.06 -3.71 5.49 84.86 0.47 -3.24 16 16 N -0.95 -58.01 10.31 21.65 0.22 -57.79 16 17 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 C 0.18 9.07 5.15 86.73 0.45 9.52 16 22 C 0.08 2.99 3.08 31.79 0.10 3.09 16 23 H 0.09 3.11 7.68 -2.38 -0.02 3.09 16 24 O -0.40 -15.03 10.44 -148.98 -1.56 -16.59 16 25 C 0.03 0.74 10.85 113.37 1.23 1.97 16 26 C 0.03 0.63 11.93 67.28 0.80 1.43 16 27 O -0.21 -3.58 10.20 18.82 0.19 -3.39 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.42 11.89 8.26 -92.71 -0.77 11.13 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.02 1.25 7.30 -2.39 -0.02 1.24 16 36 H 0.02 1.26 7.50 -2.39 -0.02 1.25 16 37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 39 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.27 3.00 8.06 -2.92 -0.02 2.98 16 Total: -1.00 -77.10 347.65 -0.84 -77.94 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.31 Total: 13.85 kcal Atomic # 6 Polarization: 32.74 SS G_CDS: 8.00 Total: 40.74 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -9.07 Total: -135.23 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -2.11 Total: -46.01 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.10 -0.84 -77.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081989778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.956 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds