Wall clock time and date at job start Fri Apr 10 2020 18:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00320 * 2 1 4 4 H 1.48498 * 109.46883 * 270.00207 * 3 2 1 5 5 H 1.48500 * 109.47121 * 29.99658 * 3 2 1 6 6 H 1.48499 * 109.47386 * 149.99932 * 3 2 1 7 7 C 1.38815 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00491 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.46875 * 125.36847 * 0.02562 * 9 7 2 11 11 C 1.54199 * 106.39861 * 197.82240 * 10 9 7 12 12 H 1.08998 * 109.64775 * 89.90093 * 11 10 9 13 13 O 1.40785 * 110.22815 * 210.34059 * 11 10 9 14 14 C 1.41320 * 118.40326 * 67.70270 * 13 11 10 15 15 C 1.51774 * 111.63625 * 56.76554 * 14 13 11 16 16 N 1.44962 * 111.99763 * 319.67157 * 15 14 13 17 17 C 1.34783 * 117.32089 * 203.54296 * 16 15 14 18 18 O 1.21277 * 119.99431 * 176.22746 * 17 16 15 19 19 C 1.50694 * 120.00360 * 356.22515 * 17 16 15 20 20 H 1.09004 * 110.50266 * 38.71083 * 19 17 16 21 21 C 1.54086 * 110.69039 * 275.88421 * 19 17 16 22 22 O 1.45698 * 104.00867 * 241.36258 * 21 19 17 23 23 C 1.33774 * 109.47477 * 359.75886 * 22 21 19 24 24 O 1.21509 * 123.06828 * 180.24467 * 23 22 21 25 25 N 1.33998 * 113.85411 * 0.42917 * 23 22 21 26 26 C 1.44542 * 125.35286 * 23.26059 * 16 15 14 27 27 H 1.08999 * 109.48628 * 106.13940 * 26 16 15 28 28 C 1.46789 * 125.36452 * 180.02562 * 9 7 2 29 29 H 0.97000 * 120.00091 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.07391 * 317.05307 * 10 9 7 31 31 H 1.09001 * 110.07157 * 78.59105 * 10 9 7 32 32 H 1.09001 * 109.06140 * 177.46696 * 14 13 11 33 33 H 1.08999 * 109.06494 * 296.47989 * 14 13 11 34 34 H 1.09002 * 109.07569 * 198.92281 * 15 14 13 35 35 H 1.09004 * 108.80647 * 80.23131 * 15 14 13 36 36 H 1.08999 * 110.52516 * 359.97438 * 21 19 17 37 37 H 1.09011 * 110.52124 * 122.59186 * 21 19 17 38 38 H 0.97006 * 125.55312 * 179.83530 * 25 23 22 39 39 H 1.09001 * 109.82923 * 59.37449 * 28 9 7 40 40 H 1.09003 * 109.82298 * 298.40874 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1368 -2.5254 -0.0005 11 6 -0.4389 -3.9680 0.4526 12 1 -0.5391 -3.9979 1.5376 13 8 -1.6322 -4.4242 -0.1389 14 6 -1.6522 -4.6344 -1.5363 15 6 -0.5749 -5.6112 -1.9707 16 7 0.6703 -5.3978 -1.2599 17 6 1.8022 -5.8277 -1.8520 18 8 2.8771 -5.6133 -1.3329 19 6 1.7321 -6.5747 -3.1589 20 1 0.9638 -6.1465 -3.8027 21 6 1.4621 -8.0722 -2.9163 22 8 2.6328 -8.7365 -3.4739 23 6 3.4694 -7.8203 -3.9744 24 8 4.5246 -8.1056 -4.5049 25 7 3.0390 -6.5592 -3.8337 26 6 0.7981 -4.7567 0.0293 27 1 1.0088 -5.5084 0.7899 28 6 1.9373 -3.7223 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5799 -1.8139 0.6964 31 1 -0.5274 -2.3591 -1.0045 32 1 -2.6278 -5.0268 -1.8233 33 1 -1.4885 -3.6827 -2.0418 34 1 -0.3978 -5.4940 -3.0399 35 1 -0.9232 -6.6263 -1.7796 36 1 1.3788 -8.2775 -1.8491 37 1 0.5575 -8.3866 -3.4370 38 1 3.5106 -5.7657 -4.1319 39 1 2.5655 -3.8403 0.8845 40 1 2.5355 -3.8554 -0.8998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083069485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:54 Heat of formation + Delta-G solvation = -110.364072 kcal Electronic energy + Delta-G solvation = -27515.798218 eV Core-core repulsion = 23525.177925 eV Total energy + Delta-G solvation = -3990.620293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.07861 -41.90377 -39.80681 -38.38678 -37.67055 -36.29443 -35.83786 -34.32723 -31.77375 -31.10007 -29.56230 -28.90581 -26.72679 -25.53539 -24.65310 -23.55362 -22.74714 -21.66247 -20.14018 -19.31742 -19.17781 -18.79171 -18.29560 -18.10506 -17.47431 -16.87504 -16.70470 -16.55549 -16.06576 -15.74924 -15.67057 -15.41676 -15.27681 -14.99604 -14.71046 -14.41975 -14.25246 -13.97010 -13.64904 -13.28342 -13.08012 -12.90350 -12.79050 -12.31908 -12.19395 -12.12917 -12.05054 -11.90878 -11.83526 -11.69537 -11.28524 -10.79288 -10.68942 -10.18351 -9.63315 -8.91410 -7.86388 -5.27738 1.17722 1.34943 1.43077 1.43948 1.53345 1.60116 1.75889 2.43325 2.50745 2.76303 2.99450 3.10499 3.26872 3.48600 3.63667 3.71126 3.76898 3.92259 3.98929 4.09402 4.28614 4.34680 4.40602 4.43939 4.48643 4.56521 4.76898 4.91154 4.99395 5.04841 5.37411 5.48160 5.52372 5.58374 5.68139 6.03131 6.13051 6.19739 6.44505 6.83821 6.94913 7.06604 7.71605 8.31511 9.17406 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.004463 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.223760 B = 6272.712404 C = 7391.058763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.148 3.852 11 C 0.089 3.911 12 H 0.120 0.880 13 O -0.372 6.372 14 C 0.045 3.955 15 C 0.060 3.940 16 N -0.581 5.581 17 C 0.490 3.510 18 O -0.554 6.554 19 C 0.081 3.919 20 H 0.173 0.827 21 C 0.056 3.944 22 O -0.334 6.334 23 C 0.652 3.348 24 O -0.571 6.571 25 N -0.705 5.705 26 C 0.124 3.876 27 H 0.091 0.909 28 C 0.123 3.877 29 H 0.249 0.751 30 H 0.060 0.940 31 H -0.002 1.002 32 H 0.152 0.848 33 H 0.030 0.970 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.178 0.822 38 H 0.442 0.558 39 H 0.018 0.982 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 -16.358 -6.760 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.023 3.977 11 C 0.029 3.971 12 H 0.137 0.863 13 O -0.289 6.289 14 C -0.031 4.031 15 C -0.061 4.061 16 N -0.314 5.314 17 C 0.276 3.724 18 O -0.431 6.431 19 C -0.028 4.028 20 H 0.190 0.810 21 C -0.018 4.018 22 O -0.244 6.244 23 C 0.405 3.595 24 O -0.459 6.459 25 N -0.377 5.377 26 C 0.019 3.981 27 H 0.108 0.892 28 C -0.002 4.002 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.016 0.984 32 H 0.169 0.831 33 H 0.048 0.952 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.196 0.804 38 H 0.286 0.714 39 H 0.036 0.964 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.579 -16.630 -6.551 19.414 hybrid contribution 1.181 2.159 0.042 2.461 sum -6.398 -14.471 -6.508 17.108 Atomic orbital electron populations 1.70087 1.05941 1.25272 1.57991 1.25550 0.96645 1.00634 1.02162 0.85109 0.77635 0.79258 0.77501 1.21299 1.21438 1.19913 1.19330 0.90702 0.83797 1.43534 0.91045 1.44510 1.02380 1.00891 1.87138 1.21812 0.84035 0.93710 0.98154 1.22664 0.83280 0.92638 0.98498 0.86261 1.86882 1.33144 1.85832 1.23034 1.22603 1.01469 0.97999 0.81059 1.22274 0.83036 1.02611 0.98214 1.46813 1.08147 1.57067 1.19401 1.21267 0.83752 0.80142 0.87209 1.90755 1.30217 1.56434 1.65699 1.22751 0.88568 0.98950 0.92544 0.80976 1.24762 0.88458 0.84959 1.03580 1.87262 1.32768 1.32847 1.71490 1.18486 0.82916 0.80774 0.77356 1.91042 1.22422 1.82905 1.49521 1.45754 1.22672 1.08064 1.61171 1.21300 0.96326 0.94690 0.85783 0.89166 1.21831 0.94796 0.83975 0.99596 0.94137 0.92225 0.98389 0.83088 0.95202 0.86279 0.86129 0.86469 0.80422 0.71443 0.96355 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.12 10.18 21.65 0.22 -54.90 16 2 C -0.06 -3.20 5.48 84.86 0.47 -2.73 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.24 -13.96 10.25 84.03 0.86 -13.09 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -31.99 3.39 -696.21 -2.36 -34.35 16 10 C 0.15 6.98 5.26 86.71 0.46 7.44 16 11 C 0.09 3.05 3.91 30.90 0.12 3.17 16 12 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 13 O -0.37 -10.51 10.25 -145.85 -1.50 -12.00 16 14 C 0.05 0.86 6.73 71.58 0.48 1.34 16 15 C 0.06 0.74 5.85 86.26 0.50 1.25 16 16 N -0.58 -13.42 3.09 -807.36 -2.50 -15.92 16 17 C 0.49 11.74 6.16 87.65 0.54 12.28 16 18 O -0.55 -19.32 13.61 -3.02 -0.04 -19.36 16 19 C 0.08 1.11 3.33 44.50 0.15 1.26 16 20 H 0.17 0.81 6.09 -2.39 -0.01 0.80 16 21 C 0.06 0.51 7.83 72.35 0.57 1.07 16 22 O -0.33 -6.86 11.09 -47.34 -0.52 -7.38 16 23 C 0.65 17.15 9.16 129.91 1.19 18.34 16 24 O -0.57 -20.33 18.04 19.66 0.35 -19.97 16 25 N -0.71 -14.60 5.65 -573.45 -3.24 -17.84 16 26 C 0.12 3.98 3.34 45.56 0.15 4.13 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 C 0.12 5.33 6.06 86.63 0.52 5.86 16 29 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.06 3.27 6.25 -2.39 -0.01 3.25 16 31 H 0.00 -0.09 6.47 -2.39 -0.02 -0.10 16 32 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 0.76 6.73 -2.39 -0.02 0.75 16 34 H 0.12 0.66 5.90 -2.39 -0.01 0.64 16 35 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.12 0.96 7.73 -2.39 -0.02 0.95 16 37 H 0.18 -0.37 8.14 -2.38 -0.02 -0.39 16 38 H 0.44 9.13 8.96 -92.70 -0.83 8.30 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 2.17 5.18 -2.39 -0.01 2.15 16 Total: -1.00 -86.14 317.86 -1.27 -87.42 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.27 Total: 6.24 kcal Atomic # 6 Polarization: 34.31 SS G_CDS: 6.01 Total: 40.32 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -7.88 Total: -123.01 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -1.71 Total: -58.72 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -86.14 -1.27 -87.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083069485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.948 kcal (2) G-P(sol) polarization free energy of solvation -86.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds