Wall clock time and date at job start Fri Apr 10 2020 18:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 116.99741 * 2 1 4 4 O 1.20826 * 120.00069 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99673 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.33553 * 54.20391 * 5 3 2 7 7 C 1.54485 * 110.46638 * 291.89303 * 5 3 2 8 8 C 1.54509 * 104.06287 * 217.14518 * 7 5 3 9 9 C 1.54484 * 104.06221 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.46579 * 265.09892 * 9 8 7 11 11 C 1.50702 * 110.36832 * 142.80962 * 9 8 7 12 12 O 1.21284 * 119.99971 * 248.16341 * 11 9 8 13 13 N 1.34782 * 119.99925 * 68.17374 * 11 9 8 14 14 C 1.46500 * 119.99934 * 179.97438 * 13 11 9 15 15 C 1.50706 * 109.46953 * 89.99140 * 14 13 11 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 C 1.46495 * 119.99992 * 359.97438 * 13 11 9 24 24 C 1.53001 * 109.47289 * 270.00440 * 23 13 11 25 25 C 1.52992 * 117.49855 * 243.74543 * 24 23 13 26 26 C 1.52998 * 117.49584 * 175.08477 * 24 23 13 27 27 O 1.44424 * 110.37036 * 176.45912 * 5 3 2 28 28 H 1.08995 * 109.47383 * 59.99578 * 1 2 3 29 29 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46778 * 299.99224 * 1 2 3 31 31 H 1.08996 * 110.51319 * 335.78458 * 7 5 3 32 32 H 1.09003 * 110.51115 * 98.50020 * 7 5 3 33 33 H 1.09002 * 110.51143 * 241.35877 * 8 7 5 34 34 H 1.08996 * 110.51482 * 118.64544 * 8 7 5 35 35 H 1.09000 * 109.47175 * 329.99569 * 14 13 11 36 36 H 1.08993 * 109.47452 * 209.99360 * 14 13 11 37 37 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.46932 * 30.00274 * 23 13 11 39 39 H 1.08995 * 109.46915 * 150.00695 * 23 13 11 40 40 H 1.08998 * 115.55119 * 29.41890 * 24 23 13 41 41 H 1.08996 * 117.50468 * 0.02562 * 25 24 23 42 42 H 1.09007 * 117.49825 * 145.02202 * 25 24 23 43 43 H 1.09002 * 117.50235 * 214.97881 * 26 24 23 44 44 H 1.08996 * 117.50207 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9755 0.6979 -0.8299 7 6 4.1345 0.7640 1.3420 8 6 5.3382 1.6925 1.6180 9 6 5.3553 2.6542 0.4091 10 1 6.0392 2.2904 -0.3577 11 6 5.7500 4.0410 0.8476 12 8 4.9382 4.9415 0.8147 13 7 7.0052 4.2806 1.2761 14 6 7.3891 5.6288 1.7018 15 6 7.1252 5.7838 3.1774 16 1 6.7133 4.9603 3.7418 17 6 7.4108 6.9767 3.8071 18 7 7.1810 7.1117 5.0950 19 14 8.1240 8.4008 2.8312 20 1 9.6067 8.3213 2.8513 21 1 7.6434 8.3290 1.4279 22 1 7.6888 9.6842 3.4385 23 6 7.9857 3.1928 1.3161 24 6 7.9257 2.5020 2.6800 25 6 9.1710 2.5777 3.5655 26 6 8.7965 1.2603 2.8818 27 8 3.9976 2.6507 -0.0841 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.3901 0.8587 2.1326 32 1 4.4640 -0.2708 1.2483 33 1 6.2628 1.1168 1.6606 34 1 5.1889 2.2462 2.5449 35 1 6.8049 6.3645 1.1490 36 1 8.4496 5.7841 1.5040 37 1 7.3823 7.9508 5.5381 38 1 7.7586 2.4700 0.5324 39 1 8.9849 3.5984 1.1580 40 1 6.9545 2.5214 3.1745 41 1 10.0329 3.1199 3.1768 42 1 9.0191 2.6465 4.6428 43 1 8.3985 0.4630 3.5094 44 1 9.4124 0.9358 2.0431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191074351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:09 Heat of formation + Delta-G solvation = -120.251081 kcal Electronic energy + Delta-G solvation = -27056.916485 eV Core-core repulsion = 23169.407803 eV Total energy + Delta-G solvation = -3887.508682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93062 -39.92206 -38.26849 -37.06945 -36.48294 -34.46486 -32.62021 -32.22054 -30.76414 -28.59111 -27.65205 -26.35798 -24.67263 -22.42195 -22.15820 -21.86870 -21.03673 -20.52909 -18.78846 -17.82226 -17.27360 -16.98154 -16.81337 -16.45908 -16.10617 -15.71460 -14.97583 -14.91256 -14.37755 -14.13700 -13.99091 -13.82835 -13.58028 -13.25648 -12.97021 -12.53193 -12.46503 -12.23923 -12.07975 -11.87076 -11.69594 -11.56354 -11.36398 -11.18567 -11.12450 -10.99709 -10.86274 -10.57354 -10.49387 -10.11261 -10.03555 -9.98632 -9.62603 -9.46573 -8.92462 -8.55389 -7.78649 -6.05006 -4.02472 2.03291 2.19069 3.19778 3.28151 3.34221 3.41954 3.43486 4.04803 4.15504 4.30169 4.42918 4.49063 4.62923 4.78513 4.85254 4.88592 4.92957 4.97235 5.08671 5.16100 5.20371 5.28367 5.29690 5.36512 5.37722 5.60756 5.64303 5.73345 5.78867 5.79852 5.93437 6.03058 6.12867 6.28245 6.41676 6.44402 6.58862 6.68648 6.97972 7.30694 7.61691 7.63465 8.16043 8.49785 8.90616 8.99892 9.55513 11.08318 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.004054 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.021873 B = 6904.549110 C = 7920.362897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.476 6.476 5 C 0.082 3.918 6 H 0.110 0.890 7 C -0.138 4.138 8 C -0.145 4.145 9 C 0.058 3.942 10 H 0.095 0.905 11 C 0.513 3.487 12 O -0.511 6.511 13 N -0.587 5.587 14 C 0.218 3.782 15 C -0.519 4.519 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.871 3.129 20 H -0.276 1.276 21 H -0.264 1.264 22 H -0.285 1.285 23 C 0.143 3.857 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.191 4.191 27 O -0.317 6.317 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -20.022 -9.636 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.303 3.697 4 O -0.360 6.360 5 C 0.023 3.977 6 H 0.127 0.873 7 C -0.176 4.176 8 C -0.182 4.182 9 C -0.003 4.003 10 H 0.113 0.887 11 C 0.298 3.702 12 O -0.386 6.386 13 N -0.320 5.320 14 C 0.097 3.903 15 C -0.558 4.558 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.698 3.302 20 H -0.202 1.202 21 H -0.189 1.189 22 H -0.210 1.210 23 C 0.018 3.982 24 C -0.181 4.181 25 C -0.196 4.196 26 C -0.229 4.229 27 O -0.234 6.234 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.516 -18.852 -9.592 21.301 hybrid contribution 0.309 0.737 -0.127 0.809 sum -2.206 -18.115 -9.719 20.676 Atomic orbital electron populations 1.23289 0.75935 1.03689 1.02848 1.86454 1.23625 1.32905 1.84618 1.23241 0.91214 0.81734 0.73520 1.90749 1.66445 1.36178 1.42628 1.22395 0.87957 0.86794 1.00588 0.87267 1.22910 0.98382 1.00724 0.95586 1.23202 0.99060 0.96745 0.99219 1.23017 0.85049 0.95852 0.96388 0.88738 1.19765 0.82666 0.88775 0.78979 1.90739 1.49293 1.45489 1.53042 1.47820 1.09369 1.11303 1.63513 1.19712 0.95028 0.78688 0.96827 1.21274 1.42763 1.00309 0.91449 0.90531 1.24828 0.95309 0.98094 0.94744 1.69889 1.48552 1.26072 1.09142 0.86924 0.79413 0.82697 0.81183 1.20216 1.18860 1.21030 1.21103 0.93591 0.88829 0.94632 1.22928 0.97150 0.99568 0.98450 1.22883 0.98847 0.98637 0.99272 1.23003 1.04554 0.91742 1.03568 1.89408 1.27307 1.22053 1.84669 0.91798 0.87907 0.91708 0.89943 0.88598 0.88189 0.89069 0.94112 0.95592 0.92685 0.91235 0.90299 0.87098 0.88953 0.88924 0.89248 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.88 10.57 -39.27 -0.41 -4.29 16 3 C 0.46 6.43 7.20 36.01 0.26 6.69 16 4 O -0.48 -8.71 16.30 -25.28 -0.41 -9.12 16 5 C 0.08 1.01 3.81 -27.10 -0.10 0.91 16 6 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.14 -1.42 6.62 -25.16 -0.17 -1.59 16 8 C -0.14 -1.77 4.51 -25.16 -0.11 -1.88 16 9 C 0.06 0.88 2.78 -27.10 -0.08 0.81 16 10 H 0.10 1.09 7.12 -51.93 -0.37 0.72 16 11 C 0.51 10.70 6.97 -10.98 -0.08 10.62 16 12 O -0.51 -13.57 16.13 -13.65 -0.22 -13.79 16 13 N -0.59 -11.64 2.46 -175.06 -0.43 -12.07 16 14 C 0.22 5.23 4.27 -5.19 -0.02 5.20 16 15 C -0.52 -14.54 9.94 -34.44 -0.34 -14.89 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 19 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.14 2.06 5.26 -4.04 -0.02 2.03 16 24 C -0.16 -2.30 3.89 -90.62 -0.35 -2.65 16 25 C -0.16 -2.27 10.18 -26.70 -0.27 -2.55 16 26 C -0.19 -2.06 10.17 -26.69 -0.27 -2.33 16 27 O -0.32 -5.53 10.17 -64.23 -0.65 -6.18 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 31 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.94 6.29 -51.93 -0.33 0.61 16 34 H 0.09 1.38 6.70 -51.93 -0.35 1.03 16 35 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 36 H 0.03 0.58 7.32 -51.93 -0.38 0.20 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.07 0.75 6.08 -51.93 -0.32 0.44 16 39 H 0.08 1.09 7.63 -51.93 -0.40 0.69 16 40 H 0.11 1.80 5.97 -51.93 -0.31 1.49 16 41 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -37.88 360.41 -7.76 -45.64 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.58 Total: 0.49 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.59 Total: 3.73 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.34 Total: -38.79 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.70 Total: -33.38 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.88 -7.76 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191074351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.608 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds