Wall clock time and date at job start Fri Apr 10 2020 18:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 116.99741 * 2 1 4 4 O 1.20826 * 120.00069 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99673 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.33553 * 54.20391 * 5 3 2 7 7 C 1.54485 * 110.46638 * 291.89303 * 5 3 2 8 8 C 1.54509 * 104.06287 * 217.14518 * 7 5 3 9 9 C 1.54484 * 104.06221 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.46579 * 265.09892 * 9 8 7 11 11 C 1.50702 * 110.36832 * 142.80962 * 9 8 7 12 12 O 1.21284 * 119.99971 * 248.16341 * 11 9 8 13 13 N 1.34782 * 119.99925 * 68.17374 * 11 9 8 14 14 C 1.46500 * 119.99934 * 179.97438 * 13 11 9 15 15 C 1.50706 * 109.46953 * 89.99140 * 14 13 11 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 C 1.46495 * 119.99992 * 359.97438 * 13 11 9 24 24 C 1.53001 * 109.47289 * 270.00440 * 23 13 11 25 25 C 1.52992 * 117.49855 * 243.74543 * 24 23 13 26 26 C 1.52998 * 117.49584 * 175.08477 * 24 23 13 27 27 O 1.44424 * 110.37036 * 176.45912 * 5 3 2 28 28 H 1.08995 * 109.47383 * 59.99578 * 1 2 3 29 29 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46778 * 299.99224 * 1 2 3 31 31 H 1.08996 * 110.51319 * 335.78458 * 7 5 3 32 32 H 1.09003 * 110.51115 * 98.50020 * 7 5 3 33 33 H 1.09002 * 110.51143 * 241.35877 * 8 7 5 34 34 H 1.08996 * 110.51482 * 118.64544 * 8 7 5 35 35 H 1.09000 * 109.47175 * 329.99569 * 14 13 11 36 36 H 1.08993 * 109.47452 * 209.99360 * 14 13 11 37 37 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.46932 * 30.00274 * 23 13 11 39 39 H 1.08995 * 109.46915 * 150.00695 * 23 13 11 40 40 H 1.08998 * 115.55119 * 29.41890 * 24 23 13 41 41 H 1.08996 * 117.50468 * 0.02562 * 25 24 23 42 42 H 1.09007 * 117.49825 * 145.02202 * 25 24 23 43 43 H 1.09002 * 117.50235 * 214.97881 * 26 24 23 44 44 H 1.08996 * 117.50207 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9755 0.6979 -0.8299 7 6 4.1345 0.7640 1.3420 8 6 5.3382 1.6925 1.6180 9 6 5.3553 2.6542 0.4091 10 1 6.0392 2.2904 -0.3577 11 6 5.7500 4.0410 0.8476 12 8 4.9382 4.9415 0.8147 13 7 7.0052 4.2806 1.2761 14 6 7.3891 5.6288 1.7018 15 6 7.1252 5.7838 3.1774 16 1 6.7133 4.9603 3.7418 17 6 7.4108 6.9767 3.8071 18 7 7.1810 7.1117 5.0950 19 14 8.1240 8.4008 2.8312 20 1 9.6067 8.3213 2.8513 21 1 7.6434 8.3290 1.4279 22 1 7.6888 9.6842 3.4385 23 6 7.9857 3.1928 1.3161 24 6 7.9257 2.5020 2.6800 25 6 9.1710 2.5777 3.5655 26 6 8.7965 1.2603 2.8818 27 8 3.9976 2.6507 -0.0841 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.3901 0.8587 2.1326 32 1 4.4640 -0.2708 1.2483 33 1 6.2628 1.1168 1.6606 34 1 5.1889 2.2462 2.5449 35 1 6.8049 6.3645 1.1490 36 1 8.4496 5.7841 1.5040 37 1 7.3823 7.9508 5.5381 38 1 7.7586 2.4700 0.5324 39 1 8.9849 3.5984 1.1580 40 1 6.9545 2.5214 3.1745 41 1 10.0329 3.1199 3.1768 42 1 9.0191 2.6465 4.6428 43 1 8.3985 0.4630 3.5094 44 1 9.4124 0.9358 2.0431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191074351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:09 Heat of formation + Delta-G solvation = -146.838833 kcal Electronic energy + Delta-G solvation = -27058.069416 eV Core-core repulsion = 23169.407803 eV Total energy + Delta-G solvation = -3888.661614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01984 -41.19143 -39.52070 -38.34602 -37.54245 -36.09153 -34.63905 -33.33865 -32.02193 -30.20369 -28.58506 -27.69287 -25.96694 -24.00269 -23.29693 -22.92033 -21.99778 -21.77997 -20.11054 -19.14432 -18.88375 -18.34416 -17.97615 -17.68252 -17.37912 -16.91614 -16.42569 -16.09413 -15.88968 -15.52853 -15.16728 -14.93518 -14.78008 -14.62861 -14.28498 -14.13466 -13.70014 -13.55638 -13.46137 -13.17897 -12.91633 -12.77966 -12.63170 -12.54144 -12.37855 -12.16967 -12.04099 -11.92081 -11.88479 -11.65505 -11.59533 -11.13405 -11.09606 -10.80770 -10.72025 -10.44500 -9.47238 -8.30449 -6.32865 0.99602 1.26165 1.29544 1.35722 1.45285 1.65023 2.07990 2.32135 2.95827 3.03882 3.09193 3.28126 3.50632 3.70033 3.80915 3.92186 3.96636 4.00641 4.15448 4.24267 4.28929 4.30003 4.31077 4.51279 4.55102 4.63832 4.68277 4.72951 4.84805 4.89080 4.91912 4.96339 4.97050 5.03440 5.20194 5.21853 5.40510 5.44547 5.48876 5.51140 5.68120 6.27744 6.62042 6.62715 6.68529 7.23930 7.37825 8.86347 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.004054 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.021873 B = 6904.549110 C = 7920.362897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.463 3.537 4 O -0.535 6.535 5 C 0.076 3.924 6 H 0.161 0.839 7 C -0.128 4.128 8 C -0.137 4.137 9 C 0.066 3.934 10 H 0.149 0.851 11 C 0.499 3.501 12 O -0.589 6.589 13 N -0.588 5.588 14 C 0.224 3.776 15 C -0.517 4.517 16 H 0.034 0.966 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.940 3.060 20 H -0.249 1.249 21 H -0.259 1.259 22 H -0.287 1.287 23 C 0.135 3.865 24 C -0.180 4.180 25 C -0.193 4.193 26 C -0.135 4.135 27 O -0.367 6.367 28 H 0.060 0.940 29 H 0.144 0.856 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.048 0.952 35 H 0.012 0.988 36 H 0.052 0.948 37 H 0.265 0.735 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -23.833 -12.150 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.306 3.694 4 O -0.424 6.424 5 C 0.018 3.982 6 H 0.178 0.822 7 C -0.165 4.165 8 C -0.174 4.174 9 C 0.006 3.994 10 H 0.166 0.834 11 C 0.287 3.713 12 O -0.468 6.468 13 N -0.319 5.319 14 C 0.102 3.898 15 C -0.556 4.556 16 H 0.052 0.948 17 C -0.188 4.188 18 N -0.587 5.587 19 Si 0.764 3.236 20 H -0.173 1.173 21 H -0.184 1.184 22 H -0.213 1.213 23 C 0.014 3.986 24 C -0.200 4.200 25 C -0.231 4.231 26 C -0.172 4.172 27 O -0.286 6.286 28 H 0.079 0.921 29 H 0.162 0.838 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.192 -22.760 -12.109 25.781 hybrid contribution -0.500 1.820 0.743 2.028 sum -0.691 -20.940 -11.366 23.836 Atomic orbital electron populations 1.23615 0.74506 1.06172 1.02294 1.86456 1.24988 1.31033 1.83707 1.23818 0.92182 0.81639 0.71781 1.90731 1.67809 1.38214 1.45653 1.22890 0.86780 0.85063 1.03452 0.82153 1.22976 0.96816 1.02889 0.93822 1.23205 1.01919 0.96316 0.95979 1.23150 0.85387 0.92026 0.98824 0.83401 1.20996 0.81962 0.90747 0.77599 1.90689 1.51427 1.48407 1.56326 1.47876 1.10507 1.11152 1.62320 1.19367 0.95747 0.81179 0.93532 1.21465 1.41618 0.99086 0.93430 0.94807 1.25777 0.95994 1.01257 0.95744 1.70051 1.50502 1.27030 1.11143 0.85818 0.79995 0.78386 0.79418 1.17281 1.18354 1.21253 1.21556 0.92703 0.88138 0.96225 1.22793 0.95919 1.03101 0.98164 1.22902 0.99201 1.02881 0.98085 1.23115 1.01196 0.89763 1.03113 1.89372 1.28559 1.25674 1.85009 0.92115 0.83791 0.92688 0.91757 0.83228 0.84101 0.93359 0.96951 0.92968 0.92586 0.86133 0.89188 0.90001 0.88919 0.91646 0.87612 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.35 -6.75 10.57 -51.47 -0.54 -7.29 16 3 C 0.46 12.51 7.20 71.24 0.51 13.02 16 4 O -0.54 -20.41 16.30 28.21 0.46 -19.95 16 5 C 0.08 1.67 3.81 30.35 0.12 1.79 16 6 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 7 C -0.13 -2.19 6.62 31.61 0.21 -1.98 16 8 C -0.14 -3.01 4.51 31.61 0.14 -2.87 16 9 C 0.07 1.88 2.78 30.35 0.08 1.96 16 10 H 0.15 2.58 7.12 -2.39 -0.02 2.56 16 11 C 0.50 21.23 6.97 87.66 0.61 21.84 16 12 O -0.59 -33.29 16.13 15.32 0.25 -33.04 16 13 N -0.59 -23.25 2.46 -826.15 -2.03 -25.28 16 14 C 0.22 10.99 4.27 85.63 0.37 11.35 16 15 C -0.52 -30.46 9.94 25.60 0.25 -30.21 16 16 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 17 C 0.01 0.58 5.47 84.66 0.46 1.04 16 18 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 19 Si 0.94 45.47 27.47 68.60 1.88 47.36 16 20 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C 0.14 3.49 5.26 86.38 0.45 3.95 16 24 C -0.18 -4.81 3.89 -10.80 -0.04 -4.85 16 25 C -0.19 -5.35 10.18 30.62 0.31 -5.04 16 26 C -0.13 -2.29 10.17 30.62 0.31 -1.98 16 27 O -0.37 -12.63 10.17 -121.26 -1.23 -13.87 16 28 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 29 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.06 1.35 7.87 -2.39 -0.02 1.33 16 32 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.14 1.88 6.29 -2.39 -0.02 1.87 16 34 H 0.05 1.50 6.70 -2.39 -0.02 1.48 16 35 H 0.01 0.68 6.48 -2.39 -0.02 0.67 16 36 H 0.05 2.29 7.32 -2.39 -0.02 2.27 16 37 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 38 H 0.12 1.88 6.08 -2.39 -0.01 1.86 16 39 H 0.09 2.15 7.63 -2.39 -0.02 2.13 16 40 H 0.08 2.71 5.97 -2.39 -0.01 2.70 16 41 H 0.09 2.51 8.03 -2.39 -0.02 2.49 16 42 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -95.59 360.41 5.02 -90.57 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.95 Total: 12.33 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.99 Total: 9.63 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.73 Total: -85.73 kcal Atomic # 8 Polarization: -73.08 SS G_CDS: -1.07 Total: -74.15 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -95.59 5.02 -90.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191074351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.273 kcal (2) G-P(sol) polarization free energy of solvation -95.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds