Wall clock time and date at job start Fri Apr 10 2020 18:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00094 * 2 1 4 4 O 1.20826 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00086 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.35195 * 54.31164 * 5 3 2 7 7 C 1.54938 * 110.30864 * 292.16592 * 5 3 2 8 8 C 1.55311 * 100.94265 * 204.64030 * 7 5 3 9 9 C 1.54379 * 102.25195 * 34.13284 * 8 7 5 10 10 H 1.09002 * 109.90503 * 98.19902 * 9 8 7 11 11 C 1.50694 * 109.83326 * 219.13164 * 9 8 7 12 12 O 1.21278 * 120.00154 * 109.52705 * 11 9 8 13 13 N 1.34775 * 120.00018 * 289.52774 * 11 9 8 14 14 C 1.46498 * 120.00088 * 175.32383 * 13 11 9 15 15 C 1.50708 * 109.46932 * 90.00282 * 14 13 11 16 16 H 1.08003 * 119.99798 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99899 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99911 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47348 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47266 * 300.00419 * 19 17 15 22 22 H 1.48506 * 109.46808 * 59.99996 * 19 17 15 23 23 C 1.46501 * 119.99770 * 355.32418 * 13 11 9 24 24 C 1.52993 * 109.47126 * 273.56586 * 23 13 11 25 25 C 1.53001 * 117.49967 * 243.74758 * 24 23 13 26 26 C 1.53004 * 117.49981 * 175.08718 * 24 23 13 27 27 O 1.43247 * 107.58751 * 338.64674 * 9 8 7 28 28 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46805 * 299.99431 * 1 2 3 30 30 H 1.08992 * 109.47420 * 60.00146 * 1 2 3 31 31 H 1.08995 * 111.13039 * 322.55906 * 7 5 3 32 32 H 1.09009 * 111.12748 * 86.67944 * 7 5 3 33 33 H 1.08996 * 110.84324 * 275.94652 * 8 7 5 34 34 H 1.08996 * 110.84544 * 152.32492 * 8 7 5 35 35 H 1.09001 * 109.47265 * 330.00020 * 14 13 11 36 36 H 1.09000 * 109.47152 * 209.99513 * 14 13 11 37 37 H 0.97003 * 119.99425 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47118 * 33.56682 * 23 13 11 39 39 H 1.09006 * 109.47128 * 153.56487 * 23 13 11 40 40 H 1.08998 * 115.55205 * 29.41840 * 24 23 13 41 41 H 1.08998 * 117.49848 * 359.97438 * 25 24 23 42 42 H 1.09002 * 117.49685 * 145.02535 * 25 24 23 43 43 H 1.08996 * 117.49951 * 214.98179 * 26 24 23 44 44 H 1.09003 * 117.49676 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9758 0.6994 -0.8309 7 6 4.1326 0.7552 1.3448 8 6 5.4980 1.4936 1.3948 9 6 5.1682 2.8387 0.7127 10 1 4.9801 3.6016 1.4682 11 6 6.3173 3.2618 -0.1657 12 8 6.1995 3.2362 -1.3724 13 7 7.4759 3.6688 0.3898 14 6 8.6261 3.9821 -0.4616 15 6 8.5880 5.4402 -0.8407 16 1 7.7869 6.0703 -0.4835 17 6 9.5754 5.9695 -1.6444 18 7 10.5507 5.2020 -2.0798 19 14 9.5278 7.7766 -2.1150 20 1 10.6932 8.0940 -2.9790 21 1 8.2719 8.0629 -2.8539 22 1 9.5803 8.6095 -0.8866 23 6 7.5849 3.7977 1.8451 24 6 7.0995 5.1843 2.2720 25 6 8.1206 6.1220 2.9192 26 6 7.0258 5.4762 3.7721 27 8 3.9938 2.6436 -0.0838 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.4960 1.0498 2.1790 32 1 4.2705 -0.3259 1.3217 33 1 6.2548 0.9481 0.8311 34 1 5.8174 1.6491 2.4253 35 1 8.5878 3.3710 -1.3634 36 1 9.5478 3.7718 0.0810 37 1 11.2455 5.5746 -2.6449 38 1 6.9718 3.0345 2.3244 39 1 8.6252 3.6688 2.1443 40 1 6.3379 5.6328 1.6341 41 1 9.1382 5.7509 3.0412 42 1 8.0305 7.1875 2.7074 43 1 6.2160 6.1169 4.1210 44 1 7.3236 4.6804 4.4548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191074375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:15 Heat of formation + Delta-G solvation = -128.729496 kcal Electronic energy + Delta-G solvation = -26808.427837 eV Core-core repulsion = 22920.551503 eV Total energy + Delta-G solvation = -3887.876334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95143 -39.88675 -38.19975 -36.95258 -36.49219 -34.39168 -32.72395 -32.25132 -30.72603 -28.22175 -27.49802 -26.16892 -24.58387 -22.69959 -22.08761 -22.01347 -20.99632 -20.50040 -18.70666 -18.21043 -17.15552 -16.99410 -16.53185 -16.46792 -16.07615 -15.49113 -15.01970 -14.82845 -14.51633 -14.21894 -14.01568 -13.51559 -13.35053 -13.27875 -12.84810 -12.52606 -12.44945 -12.27500 -11.99458 -11.91491 -11.64613 -11.38148 -11.26653 -11.21353 -11.15138 -11.02540 -10.90583 -10.61948 -10.58795 -10.26290 -10.05924 -9.94837 -9.61953 -9.50542 -8.68400 -8.38326 -7.70300 -5.99997 -4.02635 1.99766 2.21641 3.20424 3.35389 3.39603 3.44394 3.65331 3.91795 4.09660 4.21671 4.44040 4.49417 4.68735 4.82314 4.85600 4.87231 4.93022 4.98522 5.06483 5.18036 5.25435 5.27222 5.34626 5.42673 5.43397 5.50164 5.56696 5.72696 5.81552 5.83766 5.87220 6.01994 6.11248 6.25675 6.39750 6.56905 6.68283 7.06260 7.41654 7.54651 7.59435 7.96785 8.27618 8.36307 8.93125 9.07656 9.61520 11.08481 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.003708 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.906019 B = 7549.763220 C = 8326.741715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.461 3.539 4 O -0.485 6.485 5 C 0.089 3.911 6 H 0.115 0.885 7 C -0.139 4.139 8 C -0.143 4.143 9 C 0.061 3.939 10 H 0.107 0.893 11 C 0.495 3.505 12 O -0.518 6.518 13 N -0.592 5.592 14 C 0.249 3.751 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.898 5.898 19 Si 0.895 3.105 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.140 3.860 24 C -0.160 4.160 25 C -0.162 4.162 26 C -0.190 4.190 27 O -0.323 6.323 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.798 -11.667 13.158 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.302 3.698 4 O -0.370 6.370 5 C 0.030 3.970 6 H 0.132 0.868 7 C -0.176 4.176 8 C -0.181 4.181 9 C 0.000 4.000 10 H 0.124 0.876 11 C 0.280 3.720 12 O -0.394 6.394 13 N -0.325 5.325 14 C 0.131 3.869 15 C -0.555 4.555 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.538 5.538 19 Si 0.723 3.277 20 H -0.213 1.213 21 H -0.202 1.202 22 H -0.203 1.203 23 C 0.015 3.985 24 C -0.179 4.179 25 C -0.199 4.199 26 C -0.227 4.227 27 O -0.241 6.241 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.015 -11.212 12.238 21.092 hybrid contribution -0.060 1.233 -0.224 1.255 sum -13.076 -9.979 12.014 20.369 Atomic orbital electron populations 1.23285 0.76064 1.03709 1.02725 1.86473 1.23542 1.33003 1.84451 1.23564 0.91514 0.81638 0.73041 1.90699 1.66637 1.36276 1.43357 1.22408 0.87173 0.86672 1.00789 0.86787 1.23229 0.96457 1.02291 0.95656 1.23170 0.97855 0.94330 1.02701 1.22884 0.85669 0.98869 0.92567 0.87562 1.20436 0.83482 0.79082 0.88980 1.90704 1.80870 1.53226 1.14561 1.48182 1.13316 1.64700 1.06297 1.19301 0.81177 0.96569 0.89889 1.21366 1.09211 0.94471 1.30408 0.92385 1.24902 0.95412 0.98016 0.95771 1.69919 1.12946 1.35601 1.35320 0.86607 0.77503 0.85164 0.78456 1.21294 1.20236 1.20287 1.21154 1.01623 0.94001 0.81681 1.22786 1.02936 0.98047 0.94173 1.22889 0.95112 0.98917 1.02938 1.22985 1.02310 1.03851 0.93569 1.88636 1.42114 1.23730 1.69595 0.87923 0.91860 0.91759 0.89570 0.87995 0.89046 0.88251 0.94054 0.94979 0.92793 0.91309 0.90171 0.87841 0.88666 0.89206 0.89321 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.83 10.57 -39.24 -0.41 -4.25 16 3 C 0.46 6.25 7.30 36.01 0.26 6.52 16 4 O -0.48 -8.25 16.30 -25.32 -0.41 -8.66 16 5 C 0.09 1.17 3.97 -26.86 -0.11 1.06 16 6 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 7 C -0.14 -1.27 6.56 -24.48 -0.16 -1.43 16 8 C -0.14 -1.52 5.56 -24.78 -0.14 -1.66 16 9 C 0.06 0.96 3.07 -27.16 -0.08 0.87 16 10 H 0.11 1.52 7.28 -51.93 -0.38 1.14 16 11 C 0.50 10.32 6.85 -10.99 -0.08 10.25 16 12 O -0.52 -13.54 16.17 -13.96 -0.23 -13.77 16 13 N -0.59 -12.03 2.46 -175.06 -0.43 -12.46 16 14 C 0.25 6.36 5.17 -5.19 -0.03 6.34 16 15 C -0.52 -14.49 9.39 -34.44 -0.32 -14.82 16 16 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 19 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 2.12 5.37 -4.04 -0.02 2.10 16 24 C -0.16 -2.44 5.54 -90.62 -0.50 -2.94 16 25 C -0.16 -2.37 10.18 -26.69 -0.27 -2.64 16 26 C -0.19 -2.24 10.26 -26.69 -0.27 -2.51 16 27 O -0.32 -5.72 9.83 -64.40 -0.63 -6.36 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 33 H 0.09 1.01 7.84 -51.93 -0.41 0.61 16 34 H 0.10 0.78 6.76 -51.93 -0.35 0.43 16 35 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 36 H 0.03 0.82 7.87 -51.93 -0.41 0.41 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.07 0.79 4.69 -51.93 -0.24 0.55 16 39 H 0.08 1.20 7.59 -51.93 -0.39 0.80 16 40 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -36.57 369.67 -8.34 -44.91 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.76 Total: -0.37 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.75 Total: 4.11 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.31 Total: -38.38 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.69 Total: -33.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.57 -8.34 -44.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191074375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.821 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds