Wall clock time and date at job start Fri Apr 10 2020 18:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00094 * 2 1 4 4 O 1.20826 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00086 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.35195 * 54.31164 * 5 3 2 7 7 C 1.54938 * 110.30864 * 292.16592 * 5 3 2 8 8 C 1.55311 * 100.94265 * 204.64030 * 7 5 3 9 9 C 1.54379 * 102.25195 * 34.13284 * 8 7 5 10 10 H 1.09002 * 109.90503 * 98.19902 * 9 8 7 11 11 C 1.50694 * 109.83326 * 219.13164 * 9 8 7 12 12 O 1.21278 * 120.00154 * 109.52705 * 11 9 8 13 13 N 1.34775 * 120.00018 * 289.52774 * 11 9 8 14 14 C 1.46498 * 120.00088 * 175.32383 * 13 11 9 15 15 C 1.50708 * 109.46932 * 90.00282 * 14 13 11 16 16 H 1.08003 * 119.99798 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99899 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99911 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00170 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47348 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47266 * 300.00419 * 19 17 15 22 22 H 1.48506 * 109.46808 * 59.99996 * 19 17 15 23 23 C 1.46501 * 119.99770 * 355.32418 * 13 11 9 24 24 C 1.52993 * 109.47126 * 273.56586 * 23 13 11 25 25 C 1.53001 * 117.49967 * 243.74758 * 24 23 13 26 26 C 1.53004 * 117.49981 * 175.08718 * 24 23 13 27 27 O 1.43247 * 107.58751 * 338.64674 * 9 8 7 28 28 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46805 * 299.99431 * 1 2 3 30 30 H 1.08992 * 109.47420 * 60.00146 * 1 2 3 31 31 H 1.08995 * 111.13039 * 322.55906 * 7 5 3 32 32 H 1.09009 * 111.12748 * 86.67944 * 7 5 3 33 33 H 1.08996 * 110.84324 * 275.94652 * 8 7 5 34 34 H 1.08996 * 110.84544 * 152.32492 * 8 7 5 35 35 H 1.09001 * 109.47265 * 330.00020 * 14 13 11 36 36 H 1.09000 * 109.47152 * 209.99513 * 14 13 11 37 37 H 0.97003 * 119.99425 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47118 * 33.56682 * 23 13 11 39 39 H 1.09006 * 109.47128 * 153.56487 * 23 13 11 40 40 H 1.08998 * 115.55205 * 29.41840 * 24 23 13 41 41 H 1.08998 * 117.49848 * 359.97438 * 25 24 23 42 42 H 1.09002 * 117.49685 * 145.02535 * 25 24 23 43 43 H 1.08996 * 117.49951 * 214.98179 * 26 24 23 44 44 H 1.09003 * 117.49676 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9758 0.6994 -0.8309 7 6 4.1326 0.7552 1.3448 8 6 5.4980 1.4936 1.3948 9 6 5.1682 2.8387 0.7127 10 1 4.9801 3.6016 1.4682 11 6 6.3173 3.2618 -0.1657 12 8 6.1995 3.2362 -1.3724 13 7 7.4759 3.6688 0.3898 14 6 8.6261 3.9821 -0.4616 15 6 8.5880 5.4402 -0.8407 16 1 7.7869 6.0703 -0.4835 17 6 9.5754 5.9695 -1.6444 18 7 10.5507 5.2020 -2.0798 19 14 9.5278 7.7766 -2.1150 20 1 10.6932 8.0940 -2.9790 21 1 8.2719 8.0629 -2.8539 22 1 9.5803 8.6095 -0.8866 23 6 7.5849 3.7977 1.8451 24 6 7.0995 5.1843 2.2720 25 6 8.1206 6.1220 2.9192 26 6 7.0258 5.4762 3.7721 27 8 3.9938 2.6436 -0.0838 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.4960 1.0498 2.1790 32 1 4.2705 -0.3259 1.3217 33 1 6.2548 0.9481 0.8311 34 1 5.8174 1.6491 2.4253 35 1 8.5878 3.3710 -1.3634 36 1 9.5478 3.7718 0.0810 37 1 11.2455 5.5746 -2.6449 38 1 6.9718 3.0345 2.3244 39 1 8.6252 3.6688 2.1443 40 1 6.3379 5.6328 1.6341 41 1 9.1382 5.7509 3.0412 42 1 8.0305 7.1875 2.7074 43 1 6.2160 6.1169 4.1210 44 1 7.3236 4.6804 4.4548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191074375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:14 Heat of formation + Delta-G solvation = -152.255396 kcal Electronic energy + Delta-G solvation = -26809.447997 eV Core-core repulsion = 22920.551503 eV Total energy + Delta-G solvation = -3888.896494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03932 -41.15294 -39.49687 -38.27136 -37.51744 -36.08215 -34.68709 -33.36381 -31.94873 -29.73848 -28.54829 -27.61875 -26.01371 -24.25720 -23.14144 -23.09848 -22.04251 -21.70855 -20.16819 -19.24476 -18.63557 -18.22305 -18.12925 -17.53727 -17.52002 -16.72503 -16.46650 -16.24920 -16.09168 -15.55773 -14.98543 -14.79042 -14.48908 -14.36139 -14.23608 -14.12161 -13.67462 -13.39372 -13.28173 -13.08006 -12.99534 -12.82990 -12.71282 -12.65321 -12.52882 -12.23973 -12.22267 -12.01853 -11.86586 -11.70832 -11.65766 -11.28448 -11.16592 -10.71995 -10.58483 -10.27192 -9.46469 -8.20714 -6.31662 0.97515 1.27927 1.33105 1.37373 1.43963 1.70677 2.20237 2.39227 2.82292 3.03705 3.09330 3.25166 3.51149 3.62473 3.76254 3.91098 3.95625 4.05640 4.14676 4.22844 4.27474 4.30259 4.31897 4.47522 4.60003 4.62819 4.70177 4.75856 4.83364 4.89791 4.92196 5.02015 5.06854 5.14884 5.20189 5.23118 5.35263 5.38687 5.58904 5.63420 5.87527 6.10332 6.61453 6.70610 6.77924 7.29914 7.45761 8.86365 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.003708 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.906019 B = 7549.763220 C = 8326.741715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.468 3.532 4 O -0.529 6.529 5 C 0.073 3.927 6 H 0.116 0.884 7 C -0.120 4.120 8 C -0.135 4.135 9 C 0.068 3.932 10 H 0.124 0.876 11 C 0.486 3.514 12 O -0.588 6.588 13 N -0.592 5.592 14 C 0.265 3.735 15 C -0.527 4.527 16 H 0.047 0.953 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.956 3.044 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.261 1.261 23 C 0.137 3.863 24 C -0.184 4.184 25 C -0.186 4.186 26 C -0.141 4.141 27 O -0.365 6.365 28 H 0.141 0.859 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.141 0.859 35 H -0.004 1.004 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 -12.907 16.541 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.311 3.689 4 O -0.417 6.417 5 C 0.014 3.986 6 H 0.133 0.867 7 C -0.157 4.157 8 C -0.173 4.173 9 C 0.008 3.992 10 H 0.141 0.859 11 C 0.274 3.726 12 O -0.468 6.468 13 N -0.323 5.323 14 C 0.143 3.857 15 C -0.565 4.565 16 H 0.065 0.935 17 C -0.189 4.189 18 N -0.568 5.568 19 Si 0.781 3.219 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.186 1.186 23 C 0.015 3.985 24 C -0.203 4.203 25 C -0.223 4.223 26 C -0.178 4.178 27 O -0.283 6.283 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.159 0.841 35 H 0.014 0.986 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.951 -12.479 15.688 24.423 hybrid contribution 0.167 1.566 -1.317 2.053 sum -13.783 -10.913 14.371 22.707 Atomic orbital electron populations 1.23637 0.74234 1.06148 1.02557 1.86469 1.25245 1.31215 1.83641 1.23663 0.91638 0.81736 0.71816 1.90680 1.67534 1.37803 1.45704 1.22735 0.87204 0.85050 1.03573 0.86680 1.23287 0.95016 1.03985 0.93408 1.23271 0.98730 0.91142 1.04128 1.22916 0.82972 1.02139 0.91204 0.85869 1.21572 0.84564 0.77596 0.88898 1.90655 1.82253 1.56119 1.17819 1.48127 1.11936 1.63970 1.08253 1.18756 0.83209 0.94487 0.89211 1.21592 1.08773 0.95631 1.30534 0.93468 1.25713 0.95146 1.02295 0.95724 1.70021 1.13553 1.37363 1.35893 0.85649 0.77228 0.80364 0.78673 1.20185 1.21086 1.18560 1.21512 1.03083 0.95587 0.78343 1.22654 1.02918 0.97911 0.96840 1.22942 0.95864 0.98269 1.05219 1.23091 1.00279 1.03283 0.91129 1.88596 1.42608 1.26568 1.70564 0.84130 0.91524 0.92565 0.87793 0.84539 0.89565 0.84098 0.98631 0.95211 0.92553 0.86636 0.89707 0.90782 0.88789 0.90552 0.87929 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.35 -6.82 10.57 -51.37 -0.54 -7.36 16 3 C 0.47 12.31 7.30 71.24 0.52 12.83 16 4 O -0.53 -18.13 16.30 28.24 0.46 -17.67 16 5 C 0.07 1.84 3.97 30.51 0.12 1.96 16 6 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 7 C -0.12 -1.73 6.56 32.05 0.21 -1.52 16 8 C -0.14 -2.39 5.56 31.86 0.18 -2.22 16 9 C 0.07 2.07 3.07 30.31 0.09 2.16 16 10 H 0.12 3.28 7.28 -2.39 -0.02 3.26 16 11 C 0.49 20.91 6.85 87.66 0.60 21.51 16 12 O -0.59 -32.80 16.17 15.64 0.25 -32.54 16 13 N -0.59 -24.57 2.46 -826.15 -2.03 -26.60 16 14 C 0.26 14.17 5.17 85.64 0.44 14.61 16 15 C -0.53 -30.81 9.39 25.60 0.24 -30.57 16 16 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 17 C 0.01 0.58 5.46 84.65 0.46 1.04 16 18 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 19 Si 0.96 46.56 29.54 68.60 2.03 48.59 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.14 3.92 5.37 86.38 0.46 4.38 16 24 C -0.18 -5.35 5.54 -10.79 -0.06 -5.41 16 25 C -0.19 -5.24 10.18 30.62 0.31 -4.93 16 26 C -0.14 -2.78 10.26 30.62 0.31 -2.47 16 27 O -0.37 -13.07 9.83 -121.09 -1.19 -14.26 16 28 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.88 8.13 -2.38 -0.02 0.86 16 30 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.10 1.20 8.05 -2.39 -0.02 1.19 16 32 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.09 1.68 7.84 -2.39 -0.02 1.66 16 34 H 0.14 1.34 6.76 -2.39 -0.02 1.32 16 35 H 0.00 -0.27 7.49 -2.39 -0.02 -0.29 16 36 H 0.03 1.59 7.87 -2.39 -0.02 1.57 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.12 2.18 4.69 -2.39 -0.01 2.17 16 39 H 0.08 2.37 7.59 -2.38 -0.02 2.35 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -87.68 369.67 5.35 -82.33 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.00 Total: 10.95 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.09 Total: 12.95 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.75 Total: -82.99 kcal Atomic # 8 Polarization: -70.80 SS G_CDS: -1.02 Total: -71.82 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -87.68 5.35 -82.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191074375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.923 kcal (2) G-P(sol) polarization free energy of solvation -87.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds