Wall clock time and date at job start Fri Apr 10 2020 18:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99730 * 2 1 4 4 O 1.20826 * 120.00253 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99801 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.87092 * 303.99321 * 5 3 2 7 7 C 1.54094 * 109.87860 * 65.00317 * 5 3 2 8 8 C 1.54818 * 104.19085 * 121.45110 * 7 5 3 9 9 C 1.54997 * 102.08716 * 20.87943 * 8 7 5 10 10 H 1.08998 * 110.62129 * 81.64025 * 9 8 7 11 11 C 1.50706 * 110.61540 * 204.47567 * 9 8 7 12 12 O 1.21275 * 119.99800 * 109.68985 * 11 9 8 13 13 N 1.34778 * 119.99745 * 289.69476 * 11 9 8 14 14 C 1.46494 * 120.00410 * 5.07779 * 13 11 9 15 15 C 1.50702 * 109.46913 * 90.00036 * 14 13 11 16 16 H 1.07995 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00066 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99829 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99787 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47243 * 90.00040 * 19 17 15 21 21 H 1.48499 * 109.47173 * 209.99928 * 19 17 15 22 22 H 1.48504 * 109.47363 * 329.99991 * 19 17 15 23 23 C 1.46496 * 119.99596 * 185.08432 * 13 11 9 24 24 C 1.53008 * 109.47304 * 94.90164 * 23 13 11 25 25 C 1.53003 * 117.49592 * 243.57623 * 24 23 13 26 26 C 1.52997 * 117.49776 * 174.92086 * 24 23 13 27 27 O 1.43756 * 109.87577 * 182.83221 * 5 3 2 28 28 H 1.08996 * 109.46547 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47290 * 299.99522 * 1 2 3 30 30 H 1.08999 * 109.46658 * 60.00276 * 1 2 3 31 31 H 1.09003 * 110.48916 * 240.12931 * 7 5 3 32 32 H 1.09007 * 110.49077 * 2.77681 * 7 5 3 33 33 H 1.08998 * 110.90385 * 139.07757 * 8 7 5 34 34 H 1.09000 * 110.90363 * 262.68254 * 8 7 5 35 35 H 1.09003 * 109.47675 * 210.00337 * 14 13 11 36 36 H 1.09003 * 109.47374 * 330.00493 * 14 13 11 37 37 H 0.97002 * 119.99732 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47280 * 214.89719 * 23 13 11 39 39 H 1.09001 * 109.47550 * 334.89833 * 23 13 11 40 40 H 1.08992 * 115.55050 * 29.24305 * 24 23 13 41 41 H 1.08997 * 117.49927 * 359.97438 * 25 24 23 42 42 H 1.09003 * 117.49447 * 145.01660 * 25 24 23 43 43 H 1.09009 * 117.49329 * 214.97612 * 26 24 23 44 44 H 1.08994 * 117.50157 * 359.96794 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9660 0.7222 0.8507 7 6 4.1222 0.6906 -1.3125 8 6 4.9280 1.8564 -1.9356 9 6 5.1990 2.7581 -0.7044 10 1 6.0519 2.3863 -0.1365 11 6 5.4297 4.1847 -1.1320 12 8 4.5994 5.0335 -0.8851 13 7 6.5587 4.5172 -1.7888 14 6 7.5093 3.4754 -2.1852 15 6 7.1572 2.9713 -3.5611 16 1 6.3103 3.3858 -4.0877 17 6 7.9163 1.9809 -4.1476 18 7 7.6092 1.5414 -5.3485 19 14 9.3807 1.2636 -3.2365 20 1 8.9383 0.1002 -2.4265 21 1 10.4060 0.8232 -4.2163 22 1 9.9621 2.2969 -2.3423 23 6 6.8352 5.9203 -2.1062 24 6 7.7232 6.5244 -1.0164 25 6 7.1405 7.6679 -0.1835 26 6 8.2243 7.9547 -1.2256 27 8 3.9837 2.6489 0.0673 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 4.7753 -0.1574 -1.1064 32 1 3.3074 0.3940 -1.9732 33 1 5.8619 1.4966 -2.3674 34 1 4.3342 2.3847 -2.6815 35 1 8.5178 3.8890 -2.1969 36 1 7.4629 2.6512 -1.4734 37 1 8.1435 0.8449 -5.7612 38 1 7.3466 5.9817 -3.0669 39 1 5.8971 6.4729 -2.1581 40 1 8.3916 5.8254 -0.5136 41 1 6.1247 7.9902 -0.4123 42 1 7.4258 7.7214 0.8671 43 1 9.2223 8.1969 -0.8601 44 1 7.9218 8.4653 -2.1399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191074389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:17 Heat of formation + Delta-G solvation = -147.195042 kcal Electronic energy + Delta-G solvation = -27064.675346 eV Core-core repulsion = 23175.998286 eV Total energy + Delta-G solvation = -3888.677060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -42.02062 -41.15976 -39.63909 -38.15925 -37.51207 -36.60097 -34.42702 -33.29631 -31.87052 -30.13494 -28.92112 -27.79785 -25.31750 -24.38685 -23.21251 -23.13535 -21.96923 -21.69640 -20.24734 -19.05788 -18.96355 -18.33883 -17.92748 -17.75512 -17.32255 -16.96520 -16.35237 -16.20277 -15.83761 -15.64782 -15.04940 -14.97090 -14.62261 -14.54473 -14.37505 -14.30742 -13.89425 -13.45117 -13.35877 -13.02749 -12.90659 -12.79073 -12.52602 -12.46499 -12.33955 -12.30536 -12.11619 -11.99786 -11.88000 -11.64977 -11.56991 -11.32290 -11.03091 -10.86514 -10.73418 -10.52961 -9.49146 -8.21854 -6.28247 1.00568 1.27982 1.46449 1.51066 1.58344 1.59293 2.01658 2.41144 2.84648 3.00600 3.11900 3.33141 3.58855 3.73346 3.80234 3.84599 3.96229 3.97748 4.02608 4.13184 4.25981 4.28496 4.30629 4.38881 4.56434 4.61775 4.67068 4.73711 4.76927 4.79958 4.87042 4.90526 5.01048 5.01679 5.19832 5.25030 5.26011 5.28133 5.45760 5.51630 5.73514 6.22067 6.56617 6.62545 6.75870 7.20109 7.36046 8.93653 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.005224 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.623593 B = 5358.305333 C = 7456.139917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.460 3.540 4 O -0.531 6.531 5 C 0.081 3.919 6 H 0.155 0.845 7 C -0.132 4.132 8 C -0.132 4.132 9 C 0.066 3.934 10 H 0.132 0.868 11 C 0.516 3.484 12 O -0.583 6.583 13 N -0.586 5.586 14 C 0.210 3.790 15 C -0.530 4.530 16 H 0.029 0.971 17 C 0.028 3.972 18 N -0.939 5.939 19 Si 0.929 3.071 20 H -0.249 1.249 21 H -0.294 1.294 22 H -0.240 1.240 23 C 0.147 3.853 24 C -0.179 4.179 25 C -0.179 4.179 26 C -0.154 4.154 27 O -0.358 6.358 28 H 0.142 0.858 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.268 0.732 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -3.923 12.052 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.303 3.697 4 O -0.420 6.420 5 C 0.023 3.977 6 H 0.172 0.828 7 C -0.169 4.169 8 C -0.170 4.170 9 C 0.006 3.994 10 H 0.149 0.851 11 C 0.304 3.696 12 O -0.463 6.463 13 N -0.316 5.316 14 C 0.089 3.911 15 C -0.569 4.569 16 H 0.047 0.953 17 C -0.171 4.171 18 N -0.578 5.578 19 Si 0.752 3.248 20 H -0.173 1.173 21 H -0.220 1.220 22 H -0.163 1.163 23 C 0.024 3.976 24 C -0.199 4.199 25 C -0.216 4.216 26 C -0.191 4.191 27 O -0.277 6.277 28 H 0.160 0.840 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.134 0.866 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.941 -3.144 12.147 12.696 hybrid contribution 0.013 -0.112 -0.615 0.625 sum -1.928 -3.256 11.532 12.137 Atomic orbital electron populations 1.23616 0.74473 1.06117 1.02388 1.86472 1.25105 1.31314 1.83732 1.23997 0.92293 0.81644 0.71747 1.90694 1.67672 1.37949 1.45666 1.22621 0.86822 0.84977 1.03318 0.82788 1.22999 1.01032 0.99413 0.93466 1.23193 1.03173 0.95144 0.95480 1.23144 0.89317 0.93148 0.93749 0.85072 1.20476 0.81172 0.90139 0.77763 1.90621 1.45090 1.52506 1.58132 1.47807 1.20761 1.08330 1.54710 1.19848 0.89427 0.87038 0.94792 1.21336 1.13938 1.20587 1.01029 0.95275 1.25646 0.99855 0.96409 0.95214 1.70051 1.41362 1.29757 1.16594 0.85988 0.79110 0.80522 0.79188 1.17329 1.21995 1.16337 1.20943 0.98415 0.80846 0.97371 1.22648 1.03062 0.92442 1.01707 1.23023 0.98398 1.02595 0.97623 1.23034 0.99398 0.95950 1.00715 1.89023 1.41618 1.25949 1.71068 0.84000 0.91857 0.92609 0.84798 0.89897 0.86229 0.93962 0.93195 0.92784 0.92321 0.90187 0.92077 0.87386 0.90175 0.87899 0.86638 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.35 -8.40 10.56 -51.42 -0.54 -8.95 16 3 C 0.46 14.34 7.06 71.24 0.50 14.85 16 4 O -0.53 -21.45 16.27 28.31 0.46 -20.99 16 5 C 0.08 2.28 3.96 30.22 0.12 2.40 16 6 H 0.16 2.91 8.14 -2.39 -0.02 2.89 16 7 C -0.13 -3.49 6.63 31.58 0.21 -3.28 16 8 C -0.13 -4.75 5.19 31.90 0.17 -4.58 16 9 C 0.07 2.39 2.79 30.53 0.09 2.48 16 10 H 0.13 3.76 7.22 -2.39 -0.02 3.74 16 11 C 0.52 22.31 7.09 87.66 0.62 22.93 16 12 O -0.58 -29.49 16.06 15.18 0.24 -29.24 16 13 N -0.59 -23.54 2.46 -826.14 -2.03 -25.57 16 14 C 0.21 8.30 3.79 85.63 0.32 8.62 16 15 C -0.53 -25.81 7.18 25.60 0.18 -25.63 16 16 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 17 C 0.03 1.39 5.40 84.66 0.46 1.85 16 18 N -0.94 -51.94 13.96 21.45 0.30 -51.64 16 19 Si 0.93 35.72 27.47 68.60 1.88 37.60 16 20 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 21 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.24 -8.30 6.54 99.48 0.65 -7.65 16 23 C 0.15 5.41 5.78 86.38 0.50 5.91 16 24 C -0.18 -5.33 6.01 -10.79 -0.06 -5.40 16 25 C -0.18 -4.85 10.18 30.62 0.31 -4.54 16 26 C -0.15 -3.59 10.25 30.62 0.31 -3.27 16 27 O -0.36 -13.64 10.02 -121.18 -1.21 -14.85 16 28 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.08 2.20 7.69 -2.38 -0.02 2.19 16 33 H 0.12 4.54 5.43 -2.39 -0.01 4.53 16 34 H 0.04 1.82 8.05 -2.39 -0.02 1.80 16 35 H 0.05 1.88 7.13 -2.39 -0.02 1.87 16 36 H 0.05 1.89 5.24 -2.39 -0.01 1.87 16 37 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.08 2.94 8.11 -2.38 -0.02 2.92 16 39 H 0.06 2.45 6.96 -2.39 -0.02 2.43 16 40 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.08 2.41 8.03 -2.39 -0.02 2.39 16 42 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.12 2.17 8.14 -2.38 -0.02 2.16 16 44 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -73.93 362.91 4.97 -68.96 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.94 Total: 30.68 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 4.93 Total: 14.01 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.73 Total: -77.21 kcal Atomic # 8 Polarization: -72.99 SS G_CDS: -1.05 Total: -74.04 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 1.88 Total: 37.60 kcal Total: -73.93 4.97 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191074389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.237 kcal (2) G-P(sol) polarization free energy of solvation -73.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds