Wall clock time and date at job start Fri Apr 10 2020 18:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99458 * 2 1 4 4 O 1.20830 * 120.00204 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99913 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47071 * 60.00560 * 5 3 2 7 7 C 1.52995 * 109.47455 * 299.99972 * 5 3 2 8 8 C 1.53002 * 109.47553 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.46783 * 60.00108 * 8 7 5 10 10 C 1.53002 * 109.47453 * 300.00275 * 9 8 7 11 11 H 1.09000 * 109.46762 * 299.99916 * 10 9 8 12 12 C 1.50699 * 109.47335 * 179.97438 * 10 9 8 13 13 O 1.21284 * 119.99882 * 273.92091 * 12 10 9 14 14 N 1.34776 * 119.99779 * 93.92134 * 12 10 9 15 15 C 1.47578 * 134.49390 * 354.98710 * 14 12 10 16 16 C 1.53946 * 86.11480 * 155.36665 * 15 14 12 17 17 O 1.42906 * 113.73921 * 269.15441 * 16 15 14 18 18 C 1.50702 * 113.73983 * 137.95886 * 16 15 14 19 19 H 1.07996 * 120.00059 * 359.97438 * 18 16 15 20 20 C 1.37883 * 119.99685 * 180.02562 * 18 16 15 21 21 N 1.31511 * 119.99698 * 179.97438 * 20 18 16 22 22 Si 1.86796 * 119.99957 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.47066 * 269.99979 * 22 20 18 24 24 H 1.48494 * 109.47500 * 30.00414 * 22 20 18 25 25 H 1.48507 * 109.46820 * 150.00566 * 22 20 18 26 26 C 1.47580 * 134.49087 * 175.00204 * 14 12 10 27 27 C 1.53001 * 109.47102 * 179.97438 * 5 3 2 28 28 H 1.08999 * 109.47467 * 59.99856 * 1 2 3 29 29 H 1.09009 * 109.46597 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47014 * 299.99350 * 1 2 3 31 31 H 1.09005 * 109.46496 * 59.99927 * 7 5 3 32 32 H 1.09000 * 109.47026 * 300.00110 * 7 5 3 33 33 H 1.08999 * 109.46837 * 300.00864 * 8 7 5 34 34 H 1.08999 * 109.47254 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.46895 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47068 * 60.00004 * 9 8 7 37 37 H 1.09000 * 113.77049 * 41.06445 * 15 14 12 38 38 H 1.08996 * 113.87563 * 269.67947 * 15 14 12 39 39 H 0.96704 * 113.99386 * 178.07827 * 17 16 15 40 40 H 0.96999 * 120.00252 * 179.97438 * 21 20 18 41 41 H 1.09001 * 113.77640 * 90.33160 * 26 14 12 42 42 H 1.09006 * 113.76550 * 318.93088 * 26 14 12 43 43 H 1.08996 * 109.47229 * 60.00539 * 27 5 3 44 44 H 1.08999 * 109.47334 * 300.00160 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9563 0.7808 -0.8892 7 6 4.1129 0.5818 1.2501 8 6 5.6408 0.6614 1.2504 9 6 6.0750 2.1286 1.2500 10 6 5.5283 2.8219 0.0004 11 1 5.9181 2.3274 -0.8893 12 6 5.9555 4.2671 0.0004 13 8 5.2912 5.0958 0.5861 14 7 7.0755 4.6387 -0.6506 15 6 8.1442 3.9150 -1.3663 16 6 8.3694 5.2262 -2.1409 17 8 7.6028 5.3231 -3.3430 18 6 9.8228 5.5704 -2.3416 19 1 10.5908 4.9176 -1.9539 20 6 10.1719 6.7192 -3.0194 21 7 11.4402 7.0198 -3.1942 22 14 8.8434 7.8486 -3.6895 23 1 8.4940 7.4358 -5.0725 24 1 7.6377 7.7607 -2.8272 25 1 9.3425 9.2472 -3.7015 26 6 7.7260 5.9328 -0.9339 27 6 3.9999 2.7423 -0.0002 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 3.8039 -0.4635 1.2501 32 1 3.7228 1.0761 2.1399 33 1 6.0306 0.1670 0.3606 34 1 6.0303 0.1672 2.1404 35 1 7.1635 2.1853 1.2497 36 1 5.6852 2.6231 2.1397 37 1 7.7808 3.0954 -1.9861 38 1 8.9840 3.6292 -0.7329 39 1 7.7191 6.1577 -3.8174 40 1 11.6859 7.8278 -3.6713 41 1 8.4422 6.2407 -0.1721 42 1 7.0286 6.7242 -1.2087 43 1 3.6099 3.2369 0.8893 44 1 3.6105 3.2358 -0.8906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193988691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:22 Heat of formation + Delta-G solvation = -162.122624 kcal Electronic energy + Delta-G solvation = -26639.748470 eV Core-core repulsion = 22750.424101 eV Total energy + Delta-G solvation = -3889.324369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95468 -41.39252 -39.86833 -38.34299 -37.46412 -36.24468 -34.55313 -32.87144 -32.00656 -30.44104 -28.66308 -27.31962 -27.28810 -25.01282 -24.16089 -22.25359 -21.76557 -20.82094 -20.12533 -19.36667 -18.58466 -18.22750 -18.17860 -17.64240 -17.39726 -16.52244 -16.48110 -15.92991 -15.62610 -15.26497 -15.15968 -14.99249 -14.77946 -14.63601 -14.32176 -14.09875 -14.00367 -13.75914 -13.47989 -13.29009 -12.96664 -12.93052 -12.73012 -12.48216 -12.43909 -12.23408 -11.99858 -11.89731 -11.83512 -11.73256 -11.49327 -11.36029 -11.16000 -11.07902 -10.71018 -10.42206 -9.66458 -8.45170 -6.54486 1.10627 1.19131 1.26492 1.33847 1.54097 1.66885 1.93975 2.13634 2.76319 3.16293 3.36776 3.56309 3.64175 3.76799 3.88060 4.01730 4.15002 4.21250 4.28974 4.30578 4.35161 4.37159 4.37888 4.39899 4.48268 4.59542 4.62443 4.70085 4.70839 4.84607 4.95091 4.96936 5.03870 5.11343 5.12499 5.21291 5.25831 5.29100 5.35968 5.47096 6.01327 6.53887 6.62765 6.67191 6.79856 7.11401 7.13539 8.69843 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.025234 B = 0.003146 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.345479 B = 8898.962322 C = 9351.854165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.466 3.534 4 O -0.545 6.545 5 C -0.071 4.071 6 H 0.140 0.860 7 C -0.107 4.107 8 C -0.104 4.104 9 C -0.108 4.108 10 C -0.088 4.088 11 H 0.115 0.885 12 C 0.527 3.473 13 O -0.600 6.600 14 N -0.635 5.635 15 C 0.133 3.867 16 C 0.182 3.818 17 O -0.558 6.558 18 C -0.536 4.536 19 H 0.070 0.930 20 C 0.032 3.968 21 N -0.920 5.920 22 Si 0.908 3.092 23 H -0.251 1.251 24 H -0.250 1.250 25 H -0.285 1.285 26 C 0.067 3.933 27 C -0.081 4.081 28 H 0.057 0.943 29 H 0.136 0.864 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.353 0.647 40 H 0.273 0.727 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.703 -18.449 6.532 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.310 3.690 4 O -0.435 6.435 5 C -0.090 4.090 6 H 0.157 0.843 7 C -0.144 4.144 8 C -0.142 4.142 9 C -0.146 4.146 10 C -0.109 4.109 11 H 0.133 0.867 12 C 0.319 3.681 13 O -0.482 6.482 14 N -0.368 5.368 15 C 0.012 3.988 16 C 0.141 3.859 17 O -0.369 6.369 18 C -0.574 4.574 19 H 0.088 0.912 20 C -0.169 4.169 21 N -0.557 5.557 22 Si 0.734 3.266 23 H -0.176 1.176 24 H -0.175 1.175 25 H -0.211 1.211 26 C -0.057 4.057 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.154 0.846 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.205 0.795 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.509 -18.263 7.040 24.972 hybrid contribution -0.387 2.313 -0.615 2.424 sum -15.896 -15.950 6.425 23.417 Atomic orbital electron populations 1.23553 0.75090 1.05802 1.02238 1.86496 1.24684 1.32299 1.83570 1.24197 0.92721 0.81137 0.70920 1.90691 1.68148 1.37851 1.46797 1.21138 0.85717 0.97421 1.04721 0.84269 1.21587 0.96809 1.01701 0.94299 1.21514 0.93844 0.93860 1.04942 1.21543 1.01325 0.97081 0.94637 1.21255 0.96285 0.90116 1.03238 0.86689 1.21085 0.79027 0.91958 0.76068 1.90632 1.55825 1.55640 1.46112 1.50200 1.22023 1.11060 1.53481 1.23415 0.88081 0.95759 0.91560 1.20676 0.88573 0.95043 0.81629 1.86430 1.70237 1.41625 1.38656 1.21399 0.90723 1.08313 1.36942 0.91196 1.25686 0.97077 0.98755 0.95418 1.69962 1.17600 1.26604 1.41565 0.86500 0.80253 0.79151 0.80658 1.17603 1.17467 1.21148 1.24384 0.94360 0.88046 0.98879 1.21146 0.93329 0.94974 1.02524 0.92393 0.84586 0.92312 0.87936 0.92223 0.89044 0.88775 0.90330 0.92643 0.87795 0.86623 0.79451 0.91782 0.88977 0.92910 0.92497 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.29 10.47 -51.41 -0.54 -6.83 16 3 C 0.47 10.54 7.26 71.24 0.52 11.06 16 4 O -0.55 -16.89 15.73 21.95 0.35 -16.54 16 5 C -0.07 -1.30 2.63 -11.54 -0.03 -1.33 16 6 H 0.14 1.82 8.14 -2.38 -0.02 1.80 16 7 C -0.11 -1.42 5.14 30.59 0.16 -1.27 16 8 C -0.10 -1.23 5.92 30.60 0.18 -1.05 16 9 C -0.11 -2.11 5.19 30.60 0.16 -1.95 16 10 C -0.09 -2.24 2.37 -11.52 -0.03 -2.26 16 11 H 0.12 2.41 7.54 -2.39 -0.02 2.39 16 12 C 0.53 19.52 7.06 87.66 0.62 20.14 16 13 O -0.60 -27.38 16.98 -3.04 -0.05 -27.43 16 14 N -0.63 -24.00 3.61 -840.36 -3.03 -27.03 16 15 C 0.13 4.54 7.82 86.48 0.68 5.21 16 16 C 0.18 7.88 1.06 -10.88 -0.01 7.87 16 17 O -0.56 -24.95 13.32 -148.98 -1.98 -26.94 16 18 C -0.54 -27.08 9.20 25.60 0.24 -26.84 16 19 H 0.07 3.76 8.06 -2.91 -0.02 3.74 16 20 C 0.03 1.69 5.47 84.66 0.46 2.15 16 21 N -0.92 -52.02 13.96 21.45 0.30 -51.72 16 22 Si 0.91 39.71 24.34 68.60 1.67 41.38 16 23 H -0.25 -10.27 7.06 99.48 0.70 -9.57 16 24 H -0.25 -10.60 5.28 99.48 0.53 -10.07 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.07 2.85 7.43 86.48 0.64 3.50 16 27 C -0.08 -2.17 3.42 30.61 0.10 -2.06 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.14 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.10 0.95 8.11 -2.38 -0.02 0.93 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 2.99 7.82 -2.39 -0.02 2.97 16 38 H 0.12 3.51 8.09 -2.39 -0.02 3.49 16 39 H 0.35 15.40 3.31 -74.05 -0.25 15.16 16 40 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.09 3.86 8.09 -2.39 -0.02 3.84 16 42 H 0.05 2.38 6.99 -2.38 -0.02 2.36 16 43 H 0.06 1.82 7.81 -2.39 -0.02 1.80 16 44 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -72.71 353.86 2.16 -70.55 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.57 Total: 29.87 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 4.88 Total: 14.70 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.73 Total: -78.76 kcal Atomic # 8 Polarization: -75.51 SS G_CDS: -2.23 Total: -77.74 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.67 Total: 41.38 kcal Total: -72.71 2.16 -70.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193988691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.576 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds