Wall clock time and date at job start Fri Apr 10 2020 18:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 116.99766 * 2 1 4 4 O 1.20818 * 120.00217 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99843 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47518 * 59.99773 * 5 3 2 7 7 C 1.53000 * 109.46735 * 299.99428 * 5 3 2 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.47317 * 59.99960 * 8 7 5 10 10 C 1.53005 * 109.47159 * 300.00546 * 9 8 7 11 11 H 1.09001 * 109.46812 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46994 * 299.99266 * 10 9 8 13 13 O 1.21284 * 119.99909 * 120.00026 * 12 10 9 14 14 N 1.34779 * 120.00395 * 300.00349 * 12 10 9 15 15 C 1.47069 * 136.05182 * 359.62717 * 14 12 10 16 16 C 1.53245 * 88.07974 * 207.20187 * 15 14 12 17 17 O 1.42899 * 114.01546 * 87.71561 * 16 15 14 18 18 C 1.50698 * 114.32645 * 220.47142 * 16 15 14 19 19 H 1.08001 * 120.00188 * 93.76011 * 18 16 15 20 20 C 1.37874 * 119.99951 * 273.76098 * 18 16 15 21 21 N 1.31520 * 119.99994 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 120.00136 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46982 * 59.99762 * 22 20 18 24 24 H 1.48504 * 109.47257 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47114 * 299.99795 * 22 20 18 26 26 C 1.47059 * 136.06048 * 179.97438 * 14 12 10 27 27 C 1.52997 * 109.47452 * 59.99536 * 10 9 8 28 28 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47549 * 300.00058 * 1 2 3 30 30 H 1.08999 * 109.47138 * 60.00163 * 1 2 3 31 31 H 1.09002 * 109.47398 * 300.00410 * 7 5 3 32 32 H 1.09001 * 109.47194 * 60.00591 * 7 5 3 33 33 H 1.08996 * 109.47853 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47153 * 300.00319 * 8 7 5 35 35 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.46716 * 60.00091 * 9 8 7 37 37 H 1.08994 * 113.47121 * 321.93736 * 15 14 12 38 38 H 1.09007 * 113.46809 * 92.38043 * 15 14 12 39 39 H 0.96703 * 113.99849 * 86.38552 * 17 16 15 40 40 H 0.97000 * 119.99481 * 179.97438 * 21 20 18 41 41 H 1.08994 * 113.47291 * 267.62574 * 26 14 12 42 42 H 1.09001 * 113.46722 * 38.01239 * 26 14 12 43 43 H 1.08993 * 109.47194 * 179.97438 * 27 10 9 44 44 H 1.09002 * 109.46695 * 59.99734 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7810 -0.8907 7 6 4.1138 0.5812 1.2484 8 6 5.6416 0.6618 1.2482 9 6 6.0749 2.1292 1.2485 10 6 5.5274 2.8229 -0.0004 11 1 5.8357 3.8684 0.0001 12 6 6.0663 2.1404 -1.2312 13 8 5.3034 1.6388 -2.0295 14 7 7.3960 2.0873 -1.4447 15 6 8.6003 2.5619 -0.7466 16 6 9.3048 2.6153 -2.1065 17 8 9.1334 3.8517 -2.8021 18 6 10.7323 2.1328 -2.0855 19 1 10.9580 1.1036 -2.3226 20 6 11.7502 3.0052 -1.7635 21 7 11.4754 4.2587 -1.4752 22 14 13.5197 2.4074 -1.7381 23 1 13.8914 1.9038 -3.0848 24 1 14.4166 3.5309 -1.3654 25 1 13.6581 1.3125 -0.7446 26 6 8.2808 1.5347 -2.4813 27 6 3.9995 2.7423 -0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.7243 1.0752 2.1386 32 1 3.8048 -0.4641 1.2484 33 1 6.0318 0.1673 2.1377 34 1 6.0314 0.1681 0.3580 35 1 7.1634 2.1866 1.2479 36 1 5.6852 2.6228 2.1387 37 1 8.4767 3.5413 -0.2847 38 1 9.0262 1.8248 -0.0658 39 1 9.7800 4.5301 -2.5636 40 1 12.1915 4.8723 -1.2483 41 1 8.6207 0.5216 -2.2669 42 1 7.8855 1.6417 -3.4915 43 1 3.6095 3.2370 -0.8897 44 1 3.6098 3.2360 0.8900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193988722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:30 Heat of formation + Delta-G solvation = -147.675274 kcal Electronic energy + Delta-G solvation = -27097.997577 eV Core-core repulsion = 23209.299692 eV Total energy + Delta-G solvation = -3888.697885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91780 -39.93073 -38.37244 -36.66963 -36.20969 -34.07036 -32.22436 -31.79138 -30.83684 -28.63019 -27.76817 -25.52201 -25.16143 -23.95045 -22.91210 -21.35616 -20.47334 -19.58427 -18.06472 -17.59766 -17.25654 -16.90925 -16.41593 -16.02320 -15.47906 -15.13286 -14.94660 -14.68483 -14.22720 -14.09487 -13.79222 -13.34287 -13.19913 -12.82937 -12.72165 -12.60352 -12.47983 -12.22194 -12.07297 -11.90444 -11.71139 -11.58538 -11.12538 -11.07494 -11.03526 -10.91662 -10.87895 -10.62804 -10.50637 -10.29638 -10.17778 -10.07065 -9.55246 -9.09214 -8.78771 -8.39087 -7.86385 -6.43274 -4.53742 2.23062 2.69322 3.13643 3.16484 3.20053 3.22241 3.54265 4.15363 4.53492 4.67248 4.68909 4.80148 4.95187 4.98318 5.02506 5.13016 5.13495 5.22337 5.33705 5.38018 5.47684 5.55696 5.63208 5.70782 5.82804 5.92604 5.98547 6.07010 6.14119 6.18068 6.19374 6.28998 6.31929 6.39078 6.41136 6.50194 6.62421 6.67593 7.08223 7.59958 7.74911 7.77594 8.48057 8.52235 8.74970 9.17819 9.46410 10.63266 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.032720 B = 0.003099 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.542964 B = 9033.965951 C = 9173.875526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.513 6.513 5 C -0.092 4.092 6 H 0.140 0.860 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.114 4.114 10 C -0.102 4.102 11 H 0.100 0.900 12 C 0.542 3.458 13 O -0.564 6.564 14 N -0.630 5.630 15 C 0.073 3.927 16 C 0.239 3.761 17 O -0.572 6.572 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.909 3.091 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.105 3.895 27 C -0.078 4.078 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.394 0.606 40 H 0.275 0.725 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 -5.889 7.955 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.400 6.400 5 C -0.111 4.111 6 H 0.157 0.843 7 C -0.145 4.145 8 C -0.157 4.157 9 C -0.152 4.152 10 C -0.123 4.123 11 H 0.118 0.882 12 C 0.332 3.668 13 O -0.445 6.445 14 N -0.362 5.362 15 C -0.050 4.050 16 C 0.198 3.802 17 O -0.385 6.385 18 C -0.572 4.572 19 H 0.090 0.910 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.736 3.264 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.017 4.017 27 C -0.116 4.116 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.250 0.750 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.257 -5.971 7.365 16.299 hybrid contribution 1.141 0.201 0.378 1.218 sum -12.117 -5.770 7.743 15.494 Atomic orbital electron populations 1.23225 0.76931 1.03432 1.02379 1.86533 1.22985 1.33881 1.84185 1.24036 0.92229 0.81006 0.71379 1.90628 1.67346 1.36403 1.45663 1.21471 0.86023 1.00025 1.03580 0.84315 1.21513 0.96308 1.00766 0.95871 1.21546 0.94656 0.96761 1.02715 1.21596 1.01724 0.95513 0.96374 1.21271 0.95772 1.01397 0.93878 0.88155 1.19938 0.80308 0.79783 0.86763 1.90543 1.56176 1.49781 1.48050 1.49691 1.03462 1.55694 1.27372 1.24154 0.81706 0.98448 1.00689 1.19498 0.91372 0.83018 0.86359 1.86051 1.60094 1.24920 1.67434 1.21393 0.90376 0.97411 1.48038 0.91013 1.25076 1.00146 0.94714 0.93097 1.69255 1.34008 1.04088 1.46519 0.86371 0.82730 0.78424 0.78900 1.19841 1.20989 1.19868 1.23326 0.87843 0.98322 0.92206 1.21175 0.93119 0.93828 1.03471 0.88290 0.92112 0.92019 0.91682 0.90758 0.91065 0.91428 0.90465 0.90904 0.91761 0.90085 0.74982 0.91507 0.89779 0.91641 0.90453 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.58 10.47 -39.26 -0.41 -4.99 16 3 C 0.47 6.81 7.25 36.01 0.26 7.07 16 4 O -0.51 -8.47 15.73 -18.74 -0.29 -8.76 16 5 C -0.09 -1.30 2.33 -91.77 -0.21 -1.52 16 6 H 0.14 2.28 5.51 -51.93 -0.29 2.00 16 7 C -0.11 -1.23 5.14 -26.73 -0.14 -1.37 16 8 C -0.12 -1.42 5.70 -26.73 -0.15 -1.57 16 9 C -0.11 -1.43 5.34 -26.73 -0.14 -1.57 16 10 C -0.10 -1.52 2.89 -91.77 -0.26 -1.79 16 11 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 12 C 0.54 10.23 5.89 -10.99 -0.06 10.17 16 13 O -0.56 -11.99 14.43 5.55 0.08 -11.90 16 14 N -0.63 -12.50 3.64 -185.36 -0.67 -13.17 16 15 C 0.07 1.47 6.14 -8.64 -0.05 1.42 16 16 C 0.24 5.53 1.57 -91.38 -0.14 5.39 16 17 O -0.57 -14.45 13.53 -35.23 -0.48 -14.92 16 18 C -0.53 -12.93 8.69 -34.44 -0.30 -13.23 16 19 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 20 C 0.07 1.74 5.40 -17.82 -0.10 1.65 16 21 N -0.90 -22.12 11.01 55.43 0.61 -21.51 16 22 Si 0.91 18.91 29.54 -169.99 -5.02 13.88 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C 0.11 2.22 8.04 -8.50 -0.07 2.15 16 27 C -0.08 -1.13 3.66 -26.73 -0.10 -1.22 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.95 7.22 -51.93 -0.37 0.57 16 35 H 0.08 1.02 6.34 -51.93 -0.33 0.69 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.54 8.05 -51.92 -0.42 1.12 16 39 H 0.39 10.05 6.33 45.56 0.29 10.34 16 40 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 41 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 44 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -28.41 353.47 -7.42 -35.83 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -6.15 Total: 13.27 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.41 Total: 6.96 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.06 Total: -34.68 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.10 Total: -40.58 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.41 -7.42 -35.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193988722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.848 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds