Wall clock time and date at job start Fri Apr 10 2020 18:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 117.00028 * 2 1 4 4 O 1.20822 * 120.00136 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99749 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47120 * 299.99666 * 5 3 2 7 7 C 1.52997 * 109.47466 * 59.99914 * 5 3 2 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 5 10 10 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 11 11 H 1.09002 * 109.47153 * 60.00231 * 10 9 8 12 12 C 1.50699 * 109.47078 * 180.02562 * 10 9 8 13 13 O 1.21285 * 120.00039 * 120.00069 * 12 10 9 14 14 N 1.34780 * 120.00249 * 299.99993 * 12 10 9 15 15 C 1.47060 * 136.05538 * 359.63301 * 14 12 10 16 16 C 1.53237 * 88.08432 * 207.20017 * 15 14 12 17 17 O 1.42899 * 114.19546 * 87.72621 * 16 15 14 18 18 C 1.50695 * 114.32867 * 220.46976 * 16 15 14 19 19 H 1.07999 * 120.00314 * 93.75213 * 18 16 15 20 20 C 1.37880 * 119.99848 * 273.75775 * 18 16 15 21 21 N 1.31508 * 120.00150 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99920 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47157 * 59.99815 * 22 20 18 24 24 H 1.48497 * 109.47303 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47158 * 299.99819 * 22 20 18 26 26 C 1.47062 * 136.05802 * 179.97438 * 14 12 10 27 27 C 1.52999 * 109.46961 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.46827 * 59.99933 * 1 2 3 29 29 H 1.08995 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47093 * 300.00565 * 1 2 3 31 31 H 1.09002 * 109.47153 * 59.99773 * 7 5 3 32 32 H 1.09001 * 109.46832 * 299.99964 * 7 5 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 8 7 5 34 34 H 1.09004 * 109.46724 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 37 37 H 1.09008 * 113.46575 * 321.93341 * 15 14 12 38 38 H 1.09000 * 113.46735 * 92.37007 * 15 14 12 39 39 H 0.96701 * 114.00398 * 86.30399 * 17 16 15 40 40 H 0.97002 * 120.00634 * 180.02562 * 21 20 18 41 41 H 1.08997 * 113.46624 * 267.62447 * 26 14 12 42 42 H 1.08995 * 113.46853 * 38.06444 * 26 14 12 43 43 H 1.09000 * 109.47486 * 59.99568 * 27 5 3 44 44 H 1.09002 * 109.46716 * 299.99650 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1139 0.5810 -1.2482 8 6 5.6419 0.6605 -1.2472 9 6 6.0763 2.1275 -1.2471 10 6 5.5287 2.8214 0.0017 11 1 5.9177 2.3272 0.8920 12 6 5.9560 4.2665 0.0016 13 8 5.1207 5.1459 0.0010 14 7 7.2664 4.5819 0.0021 15 6 8.5346 3.8374 0.0094 16 6 9.1786 5.0425 0.7029 17 8 9.0758 5.0220 2.1280 18 6 10.5634 5.3754 0.2103 19 1 10.6968 6.1080 -0.5718 20 6 11.6601 4.7444 0.7582 21 7 11.4977 3.8518 1.7102 22 14 13.3766 5.1564 0.1471 23 1 13.6467 6.6001 0.3661 24 1 14.3746 4.3471 0.8915 25 1 13.4730 4.8491 -1.3026 26 6 8.0571 5.8218 0.0017 27 6 4.0002 2.7420 0.0011 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7246 1.0749 -2.1385 32 1 3.8048 -0.4643 -1.2481 33 1 6.0308 0.1664 -0.3570 34 1 6.0319 0.1665 -2.1372 35 1 7.1647 2.1843 -1.2468 36 1 5.6872 2.6217 -2.1373 37 1 8.5092 2.9428 0.6316 38 1 8.9318 3.6469 -0.9877 39 1 9.7837 4.5304 2.5665 40 1 12.2693 3.4081 2.0960 41 1 8.3260 6.1648 -0.9973 42 1 7.6265 6.6114 0.6174 43 1 3.6101 3.2360 0.8910 44 1 3.6108 3.2363 -0.8890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193988732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:34 Heat of formation + Delta-G solvation = -152.190760 kcal Electronic energy + Delta-G solvation = -26615.330506 eV Core-core repulsion = 22726.436815 eV Total energy + Delta-G solvation = -3888.893691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.90688 -39.84215 -38.31699 -36.95215 -36.45909 -34.02957 -32.21110 -31.82864 -30.93767 -28.62809 -27.86798 -25.51145 -25.12928 -24.06529 -22.99710 -21.24518 -20.23947 -19.67050 -18.42250 -17.67080 -17.34668 -16.84369 -16.56298 -16.06579 -15.46987 -15.11258 -15.00717 -14.52117 -14.26718 -14.22153 -13.88044 -13.63005 -13.29243 -12.93513 -12.80126 -12.64909 -12.40084 -12.30112 -12.11597 -11.89560 -11.57479 -11.45749 -11.25758 -11.07096 -11.03284 -11.00583 -10.79988 -10.76340 -10.51204 -10.47308 -10.27489 -10.18449 -9.55916 -9.12052 -8.78176 -8.38431 -7.83434 -6.42132 -4.52405 2.06626 2.50690 3.14469 3.20594 3.20833 3.23528 3.57762 4.16332 4.38595 4.55090 4.55737 4.80764 4.86021 4.91396 4.93837 5.02620 5.08086 5.17650 5.25653 5.26335 5.33015 5.44681 5.53560 5.64428 5.82416 5.89099 5.90353 5.93842 6.08925 6.12298 6.19177 6.19910 6.29216 6.41199 6.42720 6.49606 6.65409 6.69412 7.10078 7.60297 7.61092 7.79345 8.49844 8.55306 8.79548 9.19002 9.47845 10.64415 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.028975 B = 0.002943 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.130378 B = 9511.266092 C = 9927.298567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.501 6.501 5 C -0.079 4.079 6 H 0.111 0.889 7 C -0.110 4.110 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.097 4.097 11 H 0.096 0.904 12 C 0.539 3.461 13 O -0.562 6.562 14 N -0.633 5.633 15 C 0.074 3.926 16 C 0.239 3.761 17 O -0.572 6.572 18 C -0.533 4.533 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.909 3.091 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.105 3.895 27 C -0.082 4.082 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.393 0.607 40 H 0.274 0.726 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 -11.718 -4.746 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.387 6.387 5 C -0.098 4.098 6 H 0.129 0.871 7 C -0.148 4.148 8 C -0.152 4.152 9 C -0.153 4.153 10 C -0.118 4.118 11 H 0.115 0.885 12 C 0.329 3.671 13 O -0.442 6.442 14 N -0.366 5.366 15 C -0.049 4.049 16 C 0.197 3.803 17 O -0.385 6.385 18 C -0.572 4.572 19 H 0.090 0.910 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.736 3.264 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.017 4.017 27 C -0.120 4.120 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.250 0.750 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.262 -10.791 -4.735 17.741 hybrid contribution 1.155 -0.224 -0.142 1.186 sum -12.106 -11.015 -4.878 17.079 Atomic orbital electron populations 1.23251 0.76617 1.03526 1.02563 1.86513 1.23218 1.33707 1.84260 1.23888 0.92103 0.81207 0.72141 1.90695 1.67117 1.36318 1.44580 1.21155 0.86508 0.99849 1.02268 0.87117 1.21560 0.96586 1.00700 0.95957 1.21521 0.94261 0.96507 1.02874 1.21602 1.01778 0.95142 0.96819 1.21181 0.96110 0.93768 1.00779 0.88546 1.19902 0.80453 0.90480 0.76311 1.90653 1.50673 1.50471 1.52384 1.49688 1.03698 1.12624 1.70572 1.24128 0.80092 0.99699 1.00990 1.19499 0.91267 0.89215 0.80299 1.86051 1.55636 1.78443 1.18333 1.21400 0.90088 1.24392 1.21283 0.91025 1.25071 1.00091 0.93621 0.94244 1.69250 1.31942 1.26415 1.26306 0.86373 0.82297 0.78777 0.78986 1.19838 1.20990 1.19882 1.23323 0.89362 0.89041 0.99959 1.21225 0.93487 0.92200 1.05039 0.91973 0.88184 0.91935 0.91306 0.90497 0.91141 0.90909 0.90371 0.91471 0.91749 0.90140 0.75012 0.91526 0.89808 0.91652 0.90286 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.81 10.47 -39.27 -0.41 -4.22 16 3 C 0.46 5.82 7.26 36.00 0.26 6.08 16 4 O -0.50 -7.90 15.73 -18.75 -0.29 -8.20 16 5 C -0.08 -0.88 2.63 -91.78 -0.24 -1.12 16 6 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 7 C -0.11 -1.03 5.14 -26.73 -0.14 -1.17 16 8 C -0.11 -1.09 5.92 -26.73 -0.16 -1.25 16 9 C -0.12 -1.46 5.09 -26.73 -0.14 -1.59 16 10 C -0.10 -1.46 2.40 -91.74 -0.22 -1.68 16 11 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 12 C 0.54 10.81 7.40 -10.98 -0.08 10.73 16 13 O -0.56 -13.13 16.76 5.55 0.09 -13.03 16 14 N -0.63 -13.08 3.64 -185.40 -0.67 -13.75 16 15 C 0.07 1.51 6.14 -8.65 -0.05 1.46 16 16 C 0.24 5.62 1.57 -91.39 -0.14 5.47 16 17 O -0.57 -14.57 13.54 -35.23 -0.48 -15.04 16 18 C -0.53 -13.05 8.69 -34.44 -0.30 -13.35 16 19 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 21 N -0.90 -22.18 11.01 55.43 0.61 -21.57 16 22 Si 0.91 19.01 29.54 -169.99 -5.02 13.99 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C 0.11 2.29 8.04 -8.51 -0.07 2.23 16 27 C -0.08 -1.18 3.07 -26.70 -0.08 -1.26 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.08 1.55 8.05 -51.93 -0.42 1.14 16 39 H 0.39 10.09 6.33 45.56 0.29 10.37 16 40 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 41 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 42 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 44 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -29.97 360.01 -7.47 -37.44 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.33 Total: 11.44 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -0.39 Total: 7.53 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.06 Total: -35.33 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.09 Total: -40.49 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.97 -7.47 -37.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193988732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.752 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds