Wall clock time and date at job start Fri Apr 10 2020 18:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 117.00028 * 2 1 4 4 O 1.20822 * 120.00136 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99749 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47120 * 299.99666 * 5 3 2 7 7 C 1.52997 * 109.47466 * 59.99914 * 5 3 2 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 5 10 10 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 11 11 H 1.09002 * 109.47153 * 60.00231 * 10 9 8 12 12 C 1.50699 * 109.47078 * 180.02562 * 10 9 8 13 13 O 1.21285 * 120.00039 * 120.00069 * 12 10 9 14 14 N 1.34780 * 120.00249 * 299.99993 * 12 10 9 15 15 C 1.47060 * 136.05538 * 359.63301 * 14 12 10 16 16 C 1.53237 * 88.08432 * 207.20017 * 15 14 12 17 17 O 1.42899 * 114.19546 * 87.72621 * 16 15 14 18 18 C 1.50695 * 114.32867 * 220.46976 * 16 15 14 19 19 H 1.07999 * 120.00314 * 93.75213 * 18 16 15 20 20 C 1.37880 * 119.99848 * 273.75775 * 18 16 15 21 21 N 1.31508 * 120.00150 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99920 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47157 * 59.99815 * 22 20 18 24 24 H 1.48497 * 109.47303 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47158 * 299.99819 * 22 20 18 26 26 C 1.47062 * 136.05802 * 179.97438 * 14 12 10 27 27 C 1.52999 * 109.46961 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.46827 * 59.99933 * 1 2 3 29 29 H 1.08995 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47093 * 300.00565 * 1 2 3 31 31 H 1.09002 * 109.47153 * 59.99773 * 7 5 3 32 32 H 1.09001 * 109.46832 * 299.99964 * 7 5 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 8 7 5 34 34 H 1.09004 * 109.46724 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 37 37 H 1.09008 * 113.46575 * 321.93341 * 15 14 12 38 38 H 1.09000 * 113.46735 * 92.37007 * 15 14 12 39 39 H 0.96701 * 114.00398 * 86.30399 * 17 16 15 40 40 H 0.97002 * 120.00634 * 180.02562 * 21 20 18 41 41 H 1.08997 * 113.46624 * 267.62447 * 26 14 12 42 42 H 1.08995 * 113.46853 * 38.06444 * 26 14 12 43 43 H 1.09000 * 109.47486 * 59.99568 * 27 5 3 44 44 H 1.09002 * 109.46716 * 299.99650 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7809 0.8909 7 6 4.1139 0.5810 -1.2482 8 6 5.6419 0.6605 -1.2472 9 6 6.0763 2.1275 -1.2471 10 6 5.5287 2.8214 0.0017 11 1 5.9177 2.3272 0.8920 12 6 5.9560 4.2665 0.0016 13 8 5.1207 5.1459 0.0010 14 7 7.2664 4.5819 0.0021 15 6 8.5346 3.8374 0.0094 16 6 9.1786 5.0425 0.7029 17 8 9.0758 5.0220 2.1280 18 6 10.5634 5.3754 0.2103 19 1 10.6968 6.1080 -0.5718 20 6 11.6601 4.7444 0.7582 21 7 11.4977 3.8518 1.7102 22 14 13.3766 5.1564 0.1471 23 1 13.6467 6.6001 0.3661 24 1 14.3746 4.3471 0.8915 25 1 13.4730 4.8491 -1.3026 26 6 8.0571 5.8218 0.0017 27 6 4.0002 2.7420 0.0011 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7246 1.0749 -2.1385 32 1 3.8048 -0.4643 -1.2481 33 1 6.0308 0.1664 -0.3570 34 1 6.0319 0.1665 -2.1372 35 1 7.1647 2.1843 -1.2468 36 1 5.6872 2.6217 -2.1373 37 1 8.5092 2.9428 0.6316 38 1 8.9318 3.6469 -0.9877 39 1 9.7837 4.5304 2.5665 40 1 12.2693 3.4081 2.0960 41 1 8.3260 6.1648 -0.9973 42 1 7.6265 6.6114 0.6174 43 1 3.6101 3.2360 0.8910 44 1 3.6108 3.2363 -0.8890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193988732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:32 Heat of formation + Delta-G solvation = -171.901213 kcal Electronic energy + Delta-G solvation = -26616.185215 eV Core-core repulsion = 22726.436815 eV Total energy + Delta-G solvation = -3889.748400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.95281 -41.34156 -39.70609 -38.32440 -37.46646 -35.89244 -34.10501 -32.94060 -31.94055 -30.25744 -28.64262 -27.25305 -26.82453 -25.01937 -24.21107 -22.24420 -21.65872 -20.79454 -19.99850 -19.27030 -18.56076 -18.08036 -17.58040 -17.41806 -17.10977 -16.60256 -16.37070 -15.94050 -15.73059 -15.24461 -15.14671 -14.76008 -14.60453 -14.22828 -14.17790 -13.91588 -13.70505 -13.49290 -13.39530 -13.37578 -12.95042 -12.75691 -12.75201 -12.44907 -12.29909 -12.20914 -12.13862 -11.88131 -11.82134 -11.69866 -11.48694 -11.26991 -11.16540 -10.82462 -10.59064 -10.17864 -9.57106 -8.25479 -6.42181 1.10672 1.49994 1.52401 1.59095 1.62273 1.64304 2.02626 2.42598 2.96370 3.31211 3.53496 3.62297 3.74125 3.81411 4.03380 4.08331 4.18299 4.21034 4.29358 4.31213 4.35901 4.37071 4.38046 4.49950 4.61241 4.63526 4.70554 4.81834 4.91864 4.94090 4.97054 5.02737 5.11023 5.13226 5.21892 5.25020 5.27162 5.36001 5.44671 5.74793 5.93432 6.62954 6.67545 6.90641 7.14985 7.31622 7.51564 8.80469 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.028975 B = 0.002943 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.130378 B = 9511.266092 C = 9927.298567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.543 6.543 5 C -0.073 4.073 6 H 0.135 0.865 7 C -0.104 4.104 8 C -0.106 4.106 9 C -0.112 4.112 10 C -0.088 4.088 11 H 0.110 0.890 12 C 0.529 3.471 13 O -0.603 6.603 14 N -0.634 5.634 15 C 0.094 3.906 16 C 0.218 3.782 17 O -0.588 6.588 18 C -0.553 4.553 19 H 0.072 0.928 20 C 0.034 3.966 21 N -0.915 5.915 22 Si 0.969 3.031 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.266 1.266 26 C 0.102 3.898 27 C -0.074 4.074 28 H 0.059 0.941 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.390 0.610 40 H 0.277 0.723 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 -14.414 -5.732 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.312 3.688 4 O -0.433 6.433 5 C -0.092 4.092 6 H 0.153 0.847 7 C -0.142 4.142 8 C -0.143 4.143 9 C -0.150 4.150 10 C -0.109 4.109 11 H 0.128 0.872 12 C 0.321 3.679 13 O -0.485 6.485 14 N -0.366 5.366 15 C -0.029 4.029 16 C 0.176 3.824 17 O -0.401 6.401 18 C -0.591 4.591 19 H 0.091 0.909 20 C -0.166 4.166 21 N -0.556 5.556 22 Si 0.794 3.206 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.191 1.191 26 C -0.021 4.021 27 C -0.112 4.112 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.695 -13.522 -5.731 19.413 hybrid contribution 0.908 0.668 0.205 1.146 sum -11.787 -12.854 -5.526 18.294 Atomic orbital electron populations 1.23557 0.75033 1.05807 1.02287 1.86498 1.24740 1.32282 1.83587 1.24115 0.92564 0.81164 0.70974 1.90687 1.68072 1.37786 1.46713 1.21146 0.85923 0.97562 1.04583 0.84703 1.21573 0.96413 1.01760 0.94434 1.21513 0.94160 0.93973 1.04666 1.21615 1.01270 0.97214 0.94889 1.21212 0.96443 0.90360 1.02840 0.87221 1.20912 0.79642 0.92407 0.74960 1.90627 1.51550 1.52258 1.54095 1.49754 1.04166 1.12094 1.70580 1.23904 0.79186 0.98459 1.01351 1.19783 0.91711 0.91391 0.79485 1.86038 1.55561 1.78664 1.19813 1.21606 0.90852 1.24867 1.21740 0.90939 1.25729 1.03106 0.93449 0.94347 1.69305 1.32810 1.26757 1.26731 0.85438 0.78331 0.78064 0.78783 1.20292 1.20745 1.19077 1.23357 0.89221 0.89101 1.00428 1.21069 0.92931 0.94547 1.02701 0.92225 0.84593 0.92373 0.91823 0.87925 0.89735 0.88729 0.90820 0.92113 0.91361 0.88577 0.75444 0.91294 0.88047 0.93469 0.92923 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.73 10.47 -51.45 -0.54 -7.27 16 3 C 0.47 11.24 7.26 71.23 0.52 11.75 16 4 O -0.54 -17.41 15.73 21.98 0.35 -17.07 16 5 C -0.07 -1.50 2.63 -11.54 -0.03 -1.53 16 6 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 7 C -0.10 -1.62 5.14 30.59 0.16 -1.46 16 8 C -0.11 -1.62 5.92 30.60 0.18 -1.44 16 9 C -0.11 -2.60 5.09 30.59 0.16 -2.45 16 10 C -0.09 -2.58 2.40 -11.52 -0.03 -2.61 16 11 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 12 C 0.53 21.52 7.40 87.66 0.65 22.17 16 13 O -0.60 -29.24 16.76 -3.05 -0.05 -29.29 16 14 N -0.63 -26.26 3.64 -859.34 -3.13 -29.39 16 15 C 0.09 3.75 6.14 83.09 0.51 4.26 16 16 C 0.22 10.24 1.57 -11.29 -0.02 10.22 16 17 O -0.59 -30.41 13.54 -148.98 -2.02 -32.42 16 18 C -0.55 -26.82 8.69 25.60 0.22 -26.60 16 19 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 20 C 0.03 1.64 5.39 84.66 0.46 2.09 16 21 N -0.92 -44.60 11.01 21.45 0.24 -44.37 16 22 Si 0.97 38.16 29.54 68.60 2.03 40.18 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 26 C 0.10 4.49 8.04 83.18 0.67 5.16 16 27 C -0.07 -2.16 3.07 30.61 0.09 -2.07 16 28 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 29 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.80 6.35 -2.39 -0.02 1.78 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 38 H 0.10 3.55 8.05 -2.39 -0.02 3.53 16 39 H 0.39 20.26 6.33 -74.06 -0.47 19.79 16 40 H 0.28 12.80 8.31 -92.71 -0.77 12.03 16 41 H 0.10 4.05 8.10 -2.39 -0.02 4.03 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 44 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 Total: -1.00 -66.07 360.01 2.14 -63.93 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 0.53 Total: 36.61 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 4.73 Total: 19.07 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -2.89 Total: -73.75 kcal Atomic # 8 Polarization: -83.78 SS G_CDS: -2.26 Total: -86.04 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Total: -66.07 2.14 -63.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193988732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.969 kcal (2) G-P(sol) polarization free energy of solvation -66.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds