Wall clock time and date at job start Fri Apr 10 2020 18:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 C 1.52996 * 109.46851 * 59.99900 * 3 2 1 5 5 C 1.53003 * 109.47302 * 65.00250 * 4 3 2 6 6 N 1.46491 * 109.47119 * 179.97438 * 3 2 1 7 7 C 1.34775 * 120.00059 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00116 * 0.02562 * 7 6 3 9 9 C 1.50705 * 120.00249 * 180.02562 * 7 6 3 10 10 C 1.53492 * 114.20678 * 180.02562 * 9 7 6 11 11 N 1.47066 * 87.98733 * 139.65331 * 10 9 7 12 12 C 1.34780 * 136.06263 * 152.62087 * 11 10 9 13 13 O 1.21687 * 119.99315 * 359.97438 * 12 11 10 14 14 C 1.46367 * 120.00039 * 180.02562 * 12 11 10 15 15 H 1.07997 * 120.00623 * 359.97438 * 14 12 11 16 16 C 1.40055 * 119.99553 * 180.02562 * 14 12 11 17 17 N 1.30669 * 120.00386 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99833 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47259 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47064 * 119.99724 * 18 16 14 21 21 H 1.48500 * 109.47213 * 239.99890 * 18 16 14 22 22 C 1.47067 * 87.88528 * 332.87766 * 11 10 9 23 23 C 1.50696 * 109.46905 * 300.00234 * 3 2 1 24 24 N 1.34779 * 119.99734 * 274.99721 * 23 3 2 25 25 O 1.21274 * 120.00559 * 95.00055 * 23 3 2 26 26 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47096 * 300.00117 * 1 2 3 28 28 H 1.08994 * 109.47256 * 60.00355 * 1 2 3 29 29 H 1.09000 * 109.47096 * 239.99883 * 2 1 3 30 30 H 1.09007 * 109.47021 * 119.99869 * 2 1 3 31 31 H 1.09003 * 109.47105 * 185.00037 * 4 3 2 32 32 H 1.09005 * 109.47225 * 304.99954 * 4 3 2 33 33 H 1.08999 * 109.46810 * 59.99721 * 5 4 3 34 34 H 1.09000 * 109.47197 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47052 * 299.99497 * 5 4 3 36 36 H 0.97002 * 120.00246 * 0.02562 * 6 3 2 37 37 H 1.08998 * 113.28220 * 46.92815 * 9 7 6 38 38 H 1.09001 * 113.47148 * 24.87445 * 10 9 7 39 39 H 1.09003 * 113.52295 * 254.43880 * 10 9 7 40 40 H 0.96998 * 120.00171 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.46750 * 141.89678 * 22 11 10 42 42 H 1.09000 * 113.47312 * 272.34122 * 22 11 10 43 43 H 0.96996 * 120.00278 * 0.02562 * 24 23 3 44 44 H 0.97005 * 120.00004 * 180.02562 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 2.1401 1.5187 2.4953 6 7 3.5049 1.4425 0.0006 7 6 4.1788 2.6097 0.0002 8 8 3.5724 3.6601 -0.0002 9 6 5.6859 2.6097 0.0003 10 6 6.3152 4.0097 0.0004 11 7 7.3157 3.5033 0.9519 12 6 8.5904 3.8027 1.2710 13 8 9.1671 4.7037 0.6910 14 6 9.2814 3.0436 2.3144 15 1 8.7697 2.2437 2.8289 16 6 10.6058 3.3552 2.6463 17 7 11.2249 4.3233 2.0242 18 14 11.4875 2.3869 3.9785 19 1 10.5736 1.3519 4.5252 20 1 12.6889 1.7320 3.4014 21 1 11.9007 3.3072 5.0682 22 6 6.3152 2.5218 1.3976 23 6 1.5376 2.1529 -1.2304 24 7 2.2145 2.0501 -2.3914 25 8 0.5244 2.8170 -1.1760 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 1.8183 3.2140 1.2056 32 1 0.4436 2.0868 1.2951 33 1 3.2264 1.5957 2.4494 34 1 1.7770 2.0328 3.3853 35 1 1.8517 0.4685 2.5390 36 1 3.9900 0.6025 0.0006 37 1 6.1168 1.9257 -0.7309 38 1 5.6659 4.7775 0.4210 39 1 6.7382 4.2966 -0.9624 40 1 12.1423 4.5389 2.2539 41 1 6.7379 1.5425 1.6224 42 1 5.6657 2.8932 2.1903 43 1 3.0247 1.5187 -2.4351 44 1 1.8913 2.5077 -3.1834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343672987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:06:56 Heat of formation + Delta-G solvation = -111.511679 kcal Electronic energy + Delta-G solvation = -26869.277944 eV Core-core repulsion = 23014.440982 eV Total energy + Delta-G solvation = -3854.836962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.21756 -40.93801 -39.39596 -37.86839 -37.27467 -34.79827 -34.65886 -33.80505 -32.12704 -30.90555 -28.65273 -27.62086 -26.71051 -25.00675 -24.22144 -23.05816 -21.41431 -20.49420 -20.23628 -18.87534 -18.67998 -18.35251 -17.88335 -17.64850 -16.68057 -16.55906 -16.21474 -16.09224 -15.88306 -15.57091 -15.02065 -14.77391 -14.38977 -14.16143 -14.12872 -13.82678 -13.79066 -13.43465 -13.14778 -13.04637 -12.94974 -12.77573 -12.73349 -12.69658 -12.60424 -12.25526 -12.00626 -11.96688 -11.59798 -11.57949 -11.15593 -10.97137 -10.78950 -10.62136 -10.12383 -9.92940 -9.25475 -8.32472 -6.88675 1.41321 1.41870 1.44175 1.55706 1.60605 1.98864 2.22432 2.40784 2.57592 2.64955 3.25235 3.52099 3.65103 3.74240 3.90331 3.98074 4.07635 4.23484 4.31137 4.41702 4.47384 4.55178 4.59126 4.62517 4.68667 4.78065 4.80539 5.02962 5.03166 5.11773 5.14393 5.20182 5.26014 5.30419 5.32755 5.37486 5.55073 5.85974 5.93494 6.37586 6.40049 6.53658 6.83737 7.19781 7.31465 7.54497 8.39917 8.63976 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.024651 B = 0.003111 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.587614 B = 8997.730229 C = 9632.371845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.167 3.833 4 C -0.125 4.125 5 C -0.143 4.143 6 N -0.700 5.700 7 C 0.537 3.463 8 O -0.559 6.559 9 C -0.122 4.122 10 C 0.114 3.886 11 N -0.680 5.680 12 C 0.564 3.436 13 O -0.634 6.634 14 C -0.557 4.557 15 H 0.092 0.908 16 C 0.025 3.975 17 N -0.824 5.824 18 Si 1.003 2.997 19 H -0.241 1.241 20 H -0.266 1.266 21 H -0.272 1.272 22 C 0.135 3.865 23 C 0.521 3.479 24 N -0.838 5.838 25 O -0.584 6.584 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.428 0.572 37 H 0.156 0.844 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.276 0.724 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.412 0.588 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.317 -18.537 -2.935 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.077 3.923 4 C -0.164 4.164 5 C -0.200 4.200 6 N -0.357 5.357 7 C 0.323 3.677 8 O -0.436 6.436 9 C -0.143 4.143 10 C -0.011 4.011 11 N -0.419 5.419 12 C 0.372 3.628 13 O -0.521 6.521 14 C -0.594 4.594 15 H 0.110 0.890 16 C -0.190 4.190 17 N -0.454 5.454 18 Si 0.822 3.178 19 H -0.163 1.163 20 H -0.191 1.191 21 H -0.197 1.197 22 C 0.011 3.989 23 C 0.305 3.695 24 N -0.401 5.401 25 O -0.463 6.463 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.267 0.733 37 H 0.174 0.826 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.243 0.757 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -18.703 -16.769 -3.016 25.300 hybrid contribution 0.913 0.438 -0.168 1.027 sum -17.790 -16.330 -3.184 24.358 Atomic orbital electron populations 1.21842 0.94605 1.03024 1.01863 1.21842 0.97032 0.90340 1.06182 1.20600 0.80643 0.98691 0.92331 1.21754 1.01254 0.99698 0.93686 1.21749 1.00853 1.01730 0.95708 1.45920 1.05140 1.09225 1.75393 1.20342 0.89083 0.83688 0.74559 1.90758 1.70291 1.33138 1.49455 1.23101 0.90622 0.99319 1.01307 1.22528 0.88533 0.95969 0.94038 1.49733 1.10502 1.39227 1.42429 1.18422 0.78013 0.83139 0.83216 1.90571 1.66597 1.36654 1.58290 1.21333 0.98508 1.19504 1.20011 0.88969 1.27094 0.98006 0.95125 0.98764 1.70205 1.11727 1.25959 1.37489 0.84892 0.78115 0.78373 0.76427 1.16347 1.19110 1.19724 1.22604 0.87717 0.94816 0.93767 1.21061 0.82988 0.79524 0.85922 1.43710 1.30288 1.54216 1.11879 1.90704 1.27570 1.42221 1.85772 0.89785 0.92324 0.94446 0.88447 0.86929 0.93643 0.90484 0.92758 0.92930 0.89761 0.73262 0.82644 0.92021 0.92634 0.91440 0.88024 0.91148 0.75699 0.76556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.26 71.98 0.67 -1.14 16 2 C -0.12 -0.97 4.85 30.60 0.15 -0.82 16 3 C 0.17 2.72 0.47 2.86 0.00 2.72 16 4 C -0.13 -2.67 3.91 30.59 0.12 -2.55 16 5 C -0.14 -2.27 9.45 71.98 0.68 -1.59 16 6 N -0.70 -9.32 3.43 -426.34 -1.46 -10.79 16 7 C 0.54 12.22 6.45 87.66 0.57 12.79 16 8 O -0.56 -18.37 13.21 -3.04 -0.04 -18.41 16 9 C -0.12 -3.02 4.50 -11.20 -0.05 -3.07 16 10 C 0.11 4.35 7.97 83.18 0.66 5.02 16 11 N -0.68 -30.84 3.69 -863.46 -3.19 -34.03 16 12 C 0.56 33.25 8.00 86.36 0.69 33.94 16 13 O -0.63 -43.99 15.80 -4.31 -0.07 -44.06 16 14 C -0.56 -31.01 9.38 24.83 0.23 -30.77 16 15 H 0.09 4.51 7.76 -2.91 -0.02 4.49 16 16 C 0.02 1.37 5.50 85.31 0.47 1.84 16 17 N -0.82 -50.40 11.83 21.84 0.26 -50.14 16 18 Si 1.00 39.56 29.56 68.60 2.03 41.59 16 19 H -0.24 -8.52 7.11 99.48 0.71 -7.82 16 20 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 C 0.13 4.08 7.88 83.18 0.66 4.73 16 23 C 0.52 11.76 4.60 87.66 0.40 12.17 16 24 N -0.84 -13.30 8.61 -173.54 -1.49 -14.79 16 25 O -0.58 -18.69 16.41 -3.01 -0.05 -18.74 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.78 6.32 -2.39 -0.02 0.76 16 28 H 0.04 0.62 6.82 -2.39 -0.02 0.60 16 29 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 0.45 6.57 -2.38 -0.02 0.44 16 31 H 0.04 1.38 6.32 -2.39 -0.02 1.36 16 32 H 0.08 1.68 6.06 -2.38 -0.01 1.67 16 33 H 0.05 0.91 7.29 -2.39 -0.02 0.89 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.84 6.56 -2.39 -0.02 0.82 16 36 H 0.43 2.18 8.47 -92.71 -0.79 1.39 16 37 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.06 2.53 7.45 -2.39 -0.02 2.51 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.28 15.16 8.29 -92.71 -0.77 14.39 16 41 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 43 H 0.41 4.09 8.19 -92.71 -0.76 3.33 16 44 H 0.40 6.10 8.93 -92.70 -0.83 5.27 16 Total: -1.00 -93.54 358.06 -0.08 -93.62 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -1.31 Total: 22.49 kcal Atomic # 6 Polarization: 28.02 SS G_CDS: 5.25 Total: 33.26 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -5.89 Total: -109.75 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -0.16 Total: -81.21 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -93.54 -0.08 -93.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343672987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.892 kcal (2) G-P(sol) polarization free energy of solvation -93.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds