Wall clock time and date at job start Fri Apr 10 2020 18:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99934 * 2 1 4 4 H 1.48491 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46854 * 299.99841 * 3 2 1 6 6 H 1.48493 * 109.47483 * 59.99446 * 3 2 1 7 7 C 1.38946 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00353 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00222 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99712 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00249 * 180.02562 * 10 9 7 13 13 N 1.46492 * 109.47054 * 180.02562 * 12 10 9 14 14 C 1.34780 * 120.00096 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00311 * 180.02562 * 14 13 12 17 17 N 1.46500 * 109.47209 * 180.02562 * 16 14 13 18 18 C 1.34774 * 119.99881 * 179.97438 * 17 16 14 19 19 O 1.21285 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.99942 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47078 * 59.99862 * 20 18 17 22 22 C 1.52999 * 109.47317 * 179.97438 * 21 20 18 23 23 C 1.53005 * 109.47159 * 300.00546 * 22 21 20 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 22 21 25 25 C 1.53000 * 109.47083 * 179.97438 * 20 18 17 26 26 H 0.96999 * 120.00122 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99961 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47247 * 60.00016 * 12 10 9 29 29 H 1.09002 * 109.46959 * 300.00095 * 12 10 9 30 30 H 0.97000 * 120.00120 * 0.02562 * 13 12 10 31 31 H 1.09000 * 109.47120 * 60.00029 * 16 14 13 32 32 H 1.09002 * 109.47060 * 300.00125 * 16 14 13 33 33 H 0.96998 * 119.99994 * 0.02562 * 17 16 14 34 34 H 1.09002 * 109.46959 * 299.99950 * 20 18 17 35 35 H 1.08996 * 109.47853 * 300.00179 * 21 20 18 36 36 H 1.09002 * 109.47153 * 60.00207 * 21 20 18 37 37 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 39 39 H 1.09002 * 109.46935 * 299.99411 * 23 22 21 40 40 H 1.09001 * 109.46812 * 179.97438 * 23 22 21 41 41 H 1.08993 * 109.47194 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.46695 * 59.99734 * 24 23 22 43 43 H 1.08992 * 109.47399 * 299.99938 * 25 20 18 44 44 H 1.09004 * 109.46724 * 60.00424 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2123 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0022 13 7 2.1958 -5.9764 0.0027 14 6 1.7466 -7.2471 0.0038 15 8 0.5542 -7.4688 0.0039 16 6 2.7259 -8.3926 0.0049 17 7 1.9934 -9.6613 0.0053 18 6 2.6673 -10.8285 0.0058 19 8 3.8802 -10.8285 0.0063 20 6 1.9138 -12.1336 0.0057 21 6 1.0347 -12.2148 -1.2439 22 6 0.2702 -13.5401 -1.2444 23 6 1.2649 -14.7027 -1.2441 24 6 2.1440 -14.6215 0.0055 25 6 2.9081 -13.2965 0.0056 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3906 0.0016 28 1 0.6168 -4.9209 -0.8875 29 1 0.6175 -4.9205 0.8924 30 1 3.1495 -5.7991 0.0030 31 1 3.3525 -8.3341 0.8949 32 1 3.3527 -8.3356 -0.8851 33 1 1.0234 -9.6613 0.0045 34 1 1.2868 -12.1912 0.8954 35 1 0.3264 -11.3864 -1.2444 36 1 1.6618 -12.1572 -2.1337 37 1 -0.3558 -13.5982 -2.1349 38 1 -0.3568 -13.5981 -0.3547 39 1 1.8919 -14.6447 -2.1338 40 1 0.7202 -15.6468 -1.2440 41 1 2.8522 -15.4499 0.0059 42 1 1.5169 -14.6795 0.8952 43 1 3.5348 -13.2387 -0.8843 44 1 3.5347 -13.2388 0.8957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344184962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:13 Heat of formation + Delta-G solvation = -164.602246 kcal Electronic energy + Delta-G solvation = -24838.931334 eV Core-core repulsion = 20981.792192 eV Total energy + Delta-G solvation = -3857.139142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54329 -40.82290 -39.91371 -38.49045 -36.31829 -35.66940 -35.32005 -33.39169 -32.31549 -31.61227 -30.26104 -28.12497 -26.25229 -24.34895 -23.40990 -21.71000 -21.49854 -21.40488 -20.61939 -20.10192 -19.05989 -17.82728 -17.63960 -17.19177 -17.05498 -16.59210 -16.39101 -16.27840 -15.91933 -15.66682 -15.38231 -15.04649 -14.99412 -14.78684 -14.41465 -14.00591 -13.91369 -13.61061 -13.56107 -13.35797 -13.18891 -13.06761 -12.91913 -12.45602 -12.22433 -12.12192 -12.02236 -11.58963 -11.56367 -11.34112 -11.24688 -10.99399 -10.74987 -10.57719 -10.35944 -10.19773 -10.09450 -8.52406 -6.02398 1.34044 1.39162 1.42718 1.55608 1.56819 1.65964 1.89794 2.25095 2.39736 3.09785 3.14982 3.50513 3.63036 3.76318 3.80317 4.19617 4.22611 4.24118 4.29617 4.32319 4.39198 4.42104 4.43184 4.47544 4.57518 4.61605 4.72817 4.98750 5.13228 5.15101 5.17892 5.21577 5.26657 5.27838 5.37866 5.38336 5.42166 5.57744 5.90687 6.34274 6.43833 6.47770 6.97043 7.03084 7.14170 7.43116 7.93546 8.64545 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.046193 B = 0.001877 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.011856 B =14914.160918 C =15364.285746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.431 3.569 11 O -0.625 6.625 12 C 0.122 3.878 13 N -0.702 5.702 14 C 0.516 3.484 15 O -0.568 6.568 16 C 0.105 3.895 17 N -0.712 5.712 18 C 0.517 3.483 19 O -0.579 6.579 20 C -0.098 4.098 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.098 4.098 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.416 0.584 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.417 0.583 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 -26.252 -0.816 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.218 3.782 11 O -0.513 6.513 12 C -0.005 4.005 13 N -0.356 5.356 14 C 0.303 3.697 15 O -0.448 6.448 16 C -0.022 4.022 17 N -0.367 5.367 18 C 0.305 3.695 19 O -0.458 6.458 20 C -0.119 4.119 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.136 4.136 26 H 0.089 0.911 27 H 0.234 0.766 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.255 0.745 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.256 0.744 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.170 -26.194 -0.817 26.233 hybrid contribution -0.025 1.397 -0.006 1.397 sum -1.195 -24.797 -0.823 24.839 Atomic orbital electron populations 1.69678 1.06940 1.29575 1.49322 1.26107 0.96537 1.02636 0.95804 0.84821 0.78114 0.76818 0.78297 1.19529 1.19668 1.19652 1.19767 0.92962 0.83587 1.50315 0.89621 1.41847 1.09620 1.04608 1.63391 1.20471 0.88142 0.86015 0.83578 1.90488 1.15252 1.87540 1.58009 1.20814 0.91525 0.83533 1.04667 1.45603 1.11766 1.04422 1.73775 1.20689 0.89503 0.84044 0.75512 1.90674 1.17558 1.84815 1.51709 1.21013 0.93478 0.81748 1.05998 1.45773 1.11693 1.04130 1.75152 1.21279 0.87780 0.86060 0.74368 1.90695 1.15673 1.88219 1.51216 1.21387 0.98014 0.90249 1.02273 1.21551 0.98043 0.99589 0.95626 1.21529 0.97650 0.93000 1.03099 1.21585 0.97731 0.98809 0.97868 1.21532 0.98805 0.96021 0.98925 1.21316 0.96712 0.93429 1.02136 0.91064 0.76633 0.88305 0.88312 0.74508 0.87264 0.87351 0.74436 0.86547 0.90735 0.92308 0.90889 0.90714 0.92487 0.90752 0.91209 0.90919 0.92761 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.73 13.05 21.66 0.28 -47.45 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 3 Si 1.00 41.24 29.55 68.60 2.03 43.27 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.34 -18.24 9.68 84.04 0.81 -17.43 16 8 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -27.23 5.29 -306.99 -1.62 -28.85 16 10 C 0.43 19.05 7.85 87.66 0.69 19.73 16 11 O -0.62 -31.35 15.24 -3.05 -0.05 -31.40 16 12 C 0.12 4.08 6.15 85.63 0.53 4.61 16 13 N -0.70 -20.55 5.53 -466.80 -2.58 -23.13 16 14 C 0.52 13.63 7.90 87.66 0.69 14.32 16 15 O -0.57 -17.41 15.67 -3.03 -0.05 -17.45 16 16 C 0.10 2.26 6.15 85.63 0.53 2.79 16 17 N -0.71 -14.41 5.42 -466.78 -2.53 -16.94 16 18 C 0.52 11.12 7.15 87.66 0.63 11.75 16 19 O -0.58 -16.76 15.98 -3.05 -0.05 -16.80 16 20 C -0.10 -1.46 2.53 -11.54 -0.03 -1.49 16 21 C -0.11 -1.38 5.10 30.59 0.16 -1.22 16 22 C -0.12 -1.08 5.92 30.60 0.18 -0.90 16 23 C -0.12 -1.16 5.92 30.60 0.18 -0.98 16 24 C -0.12 -1.21 5.92 30.58 0.18 -1.03 16 25 C -0.10 -1.51 4.49 30.58 0.14 -1.38 16 26 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 27 H 0.40 18.59 7.90 -92.71 -0.73 17.85 16 28 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 30 H 0.42 12.21 7.44 -92.71 -0.69 11.52 16 31 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.42 7.76 6.85 -92.71 -0.64 7.12 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 0.87 7.56 -2.39 -0.02 0.86 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 44 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 Total: -1.00 -67.00 366.45 -0.43 -67.44 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: -1.02 Total: 42.59 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 5.15 Total: 28.74 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -6.45 Total: -116.38 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: -0.14 Total: -65.66 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -67.00 -0.43 -67.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.165 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds