Wall clock time and date at job start Fri Apr 10 2020 18:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 113.52972 * 2 1 4 4 C 1.56567 * 114.55167 * 134.21580 * 2 1 3 5 5 H 1.08998 * 114.56206 * 44.82765 * 4 2 1 6 6 N 1.46508 * 114.55508 * 271.04355 * 4 2 1 7 7 C 1.34769 * 119.99874 * 163.99516 * 6 4 2 8 8 O 1.21593 * 120.00267 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99835 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99530 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46611 * 180.02562 * 10 9 7 12 12 O 1.21296 * 120.00037 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99715 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99951 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99750 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00306 * 179.97438 * 14 13 11 17 17 N 1.31408 * 120.00046 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99847 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47236 * 89.99712 * 18 16 14 20 20 H 1.48494 * 109.47215 * 210.00214 * 18 16 14 21 21 H 1.48507 * 109.47255 * 330.00028 * 18 16 14 22 22 C 1.50334 * 81.31079 * 157.93873 * 4 2 1 23 23 H 1.08999 * 114.28510 * 71.65402 * 22 4 2 24 24 C 1.51859 * 127.87546 * 226.64375 * 22 4 2 25 25 C 1.55788 * 102.15051 * 118.36295 * 24 22 4 26 26 O 1.46071 * 105.52689 * 353.59506 * 25 24 22 27 27 C 1.40187 * 103.47960 * 330.07316 * 26 25 24 28 28 H 1.09001 * 110.51874 * 293.22276 * 27 26 25 29 29 H 1.08995 * 109.47724 * 285.79023 * 1 2 3 30 30 H 1.09002 * 109.46794 * 45.78933 * 1 2 3 31 31 H 1.08997 * 109.47325 * 165.78409 * 1 2 3 32 32 H 1.08999 * 109.46736 * 206.79910 * 3 2 1 33 33 H 1.08993 * 109.47336 * 326.79975 * 3 2 1 34 34 H 1.09000 * 109.46838 * 86.80363 * 3 2 1 35 35 H 0.96999 * 119.99603 * 343.98994 * 6 4 2 36 36 H 0.96996 * 119.99956 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47228 * 299.99382 * 10 9 7 38 38 H 1.08991 * 109.47531 * 60.00323 * 10 9 7 39 39 H 0.96999 * 120.00211 * 359.97438 * 13 11 10 40 40 H 0.97006 * 119.99998 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.87070 * 0.19811 * 24 22 4 42 42 H 1.09000 * 110.86545 * 236.52084 * 24 22 4 43 43 H 1.09005 * 110.24997 * 112.63698 * 25 24 22 44 44 H 1.09002 * 110.24532 * 234.55531 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1408 1.4027 0.0000 4 6 2.1806 -0.9931 1.0207 5 1 1.7293 -1.9851 1.0381 6 7 2.4115 -0.4314 2.3540 7 6 2.6567 -1.2494 3.3965 8 8 2.6869 -2.4536 3.2306 9 7 2.8697 -0.7327 4.6230 10 6 3.1368 -1.6219 5.7562 11 6 3.3374 -0.7999 7.0033 12 8 3.2648 0.4097 6.9505 13 7 3.5985 -1.4088 8.1769 14 6 3.7815 -0.6610 9.3114 15 1 3.7160 0.4160 9.2645 16 6 4.0501 -1.2888 10.5215 17 7 4.2250 -0.5720 11.6089 18 14 4.1626 -3.1516 10.6026 19 1 5.5648 -3.5740 10.3564 20 1 3.7347 -3.6153 11.9469 21 1 3.2777 -3.7465 9.5690 22 6 3.3389 -0.8500 0.0732 23 1 3.8383 0.1178 0.1186 24 6 4.2024 -1.9512 -0.5167 25 6 3.9365 -1.7938 -2.0437 26 8 2.8844 -0.7867 -2.1556 27 6 2.1504 -0.9480 -0.9722 28 1 1.6450 -1.9137 -0.9647 29 1 -0.3634 0.2796 0.9888 30 1 -0.3633 0.7166 -0.7366 31 1 -0.3634 -0.9961 -0.2524 32 1 3.1268 1.3696 -0.4633 33 1 1.4975 2.0791 -0.5627 34 1 2.2333 1.7587 1.0261 35 1 2.3879 0.5292 2.4862 36 1 2.8460 0.2279 4.7553 37 1 2.2910 -2.2949 5.8973 38 1 4.0358 -2.2050 5.5565 39 1 3.6569 -2.3761 8.2191 40 1 4.4122 -1.0102 12.4539 41 1 3.8772 -2.9302 -0.1649 42 1 5.2548 -1.7845 -0.2868 43 1 4.8396 -1.4541 -2.5509 44 1 3.5997 -2.7400 -2.4673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344835710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:27 Heat of formation + Delta-G solvation = -43.877606 kcal Electronic energy + Delta-G solvation = -26002.614792 eV Core-core repulsion = 22150.710663 eV Total energy + Delta-G solvation = -3851.904129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 9.83 seconds Orbital eigenvalues (eV) -43.25938 -41.04171 -40.04379 -37.94562 -36.26690 -35.26991 -34.42307 -33.81051 -32.82406 -30.03638 -29.27245 -28.77034 -26.41279 -25.05888 -24.06839 -21.96063 -21.46741 -21.23030 -20.58545 -20.30695 -19.41771 -18.10435 -17.43886 -16.98361 -16.88064 -16.72597 -16.41940 -16.26142 -15.69671 -15.60737 -15.51951 -15.12716 -14.84594 -14.74211 -14.30455 -14.09702 -13.97352 -13.69508 -13.46625 -13.17700 -12.96852 -12.89062 -12.55004 -12.43919 -12.38439 -12.28577 -11.99692 -11.68011 -11.65172 -11.57212 -11.41330 -10.83681 -10.64291 -10.36574 -10.30112 -10.14961 -9.74291 -8.44943 -6.06825 1.31872 1.34811 1.44219 1.53721 1.79956 2.08034 2.11499 2.21185 2.80583 2.99150 3.11552 3.29424 3.39579 3.59443 3.86911 3.96146 4.00583 4.07378 4.22617 4.30505 4.40302 4.44108 4.46134 4.49480 4.54998 4.73103 4.82818 4.84244 4.95353 4.96980 5.03326 5.11100 5.16787 5.29873 5.32096 5.36170 5.48549 5.51663 5.88036 5.89051 5.96531 6.49649 6.79037 7.01975 7.29542 7.53405 7.79242 8.71489 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.002492 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.463993 B =11235.239741 C =11669.781049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.135 4.135 4 C 0.167 3.833 5 H 0.113 0.887 6 N -0.718 5.718 7 C 0.708 3.292 8 O -0.627 6.627 9 N -0.727 5.727 10 C 0.139 3.861 11 C 0.446 3.554 12 O -0.614 6.614 13 N -0.578 5.578 14 C -0.331 4.331 15 H 0.064 0.936 16 C -0.008 4.008 17 N -0.926 5.926 18 Si 0.959 3.041 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.232 1.232 22 C -0.200 4.200 23 H 0.125 0.875 24 C -0.141 4.141 25 C 0.048 3.952 26 O -0.371 6.371 27 C 0.028 3.972 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.409 0.591 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.392 0.608 40 H 0.281 0.719 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -4.022 -27.163 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.191 4.191 4 C 0.061 3.939 5 H 0.131 0.869 6 N -0.373 5.373 7 C 0.408 3.592 8 O -0.509 6.509 9 N -0.385 5.385 10 C 0.010 3.990 11 C 0.234 3.766 12 O -0.500 6.500 13 N -0.218 5.218 14 C -0.460 4.460 15 H 0.082 0.918 16 C -0.208 4.208 17 N -0.566 5.566 18 Si 0.779 3.221 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.155 1.155 22 C -0.219 4.219 23 H 0.143 0.857 24 C -0.179 4.179 25 C -0.027 4.027 26 O -0.290 6.290 27 C -0.031 4.031 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.247 0.753 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.228 0.772 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.108 -4.146 -27.287 27.905 hybrid contribution 0.339 -0.103 1.022 1.082 sum -3.769 -4.249 -26.265 26.872 Atomic orbital electron populations 1.21808 0.91991 1.02947 1.02910 1.22076 0.96294 0.94950 0.90947 1.21812 1.01355 0.92918 1.03054 1.22425 0.95669 0.97830 0.77977 0.86948 1.44873 1.75995 1.09700 1.06732 1.15912 0.77647 0.85161 0.80474 1.90876 1.60920 1.14306 1.84786 1.44724 1.76382 1.11234 1.06117 1.20684 1.03947 0.91585 0.82761 1.20519 0.82257 0.88547 0.85324 1.90524 1.57286 1.16109 1.86087 1.41920 1.63934 1.08782 1.07187 1.19026 1.48176 0.92608 0.86148 0.91837 1.26064 0.95718 1.05234 0.93814 1.69780 1.47523 1.38834 1.00484 0.85447 0.80344 0.76643 0.79703 1.18118 1.19900 1.15526 1.25074 0.95784 1.01707 0.99380 0.85726 1.22345 1.01074 0.99164 0.95316 1.24303 0.90730 0.91996 0.95707 1.88484 1.42946 1.57882 1.39674 1.23787 0.96722 0.99491 0.83122 0.89308 0.91544 0.90956 0.91900 0.91266 0.90526 0.90994 0.75424 0.75299 0.88075 0.88095 0.77221 0.90942 0.91033 0.90355 0.87960 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.36 71.98 0.67 -1.05 16 2 C -0.04 -0.59 1.51 -60.06 -0.09 -0.68 16 3 C -0.13 -1.64 8.61 71.98 0.62 -1.02 16 4 C 0.17 3.07 3.56 36.66 0.13 3.20 16 5 H 0.11 2.39 7.12 -2.39 -0.02 2.37 16 6 N -0.72 -14.76 5.38 -499.62 -2.69 -17.45 16 7 C 0.71 20.17 8.57 179.06 1.53 21.70 16 8 O -0.63 -21.72 16.05 -4.01 -0.06 -21.78 16 9 N -0.73 -21.64 5.53 -482.28 -2.67 -24.31 16 10 C 0.14 4.48 6.15 85.63 0.53 5.00 16 11 C 0.45 19.13 7.85 87.66 0.69 19.82 16 12 O -0.61 -31.11 15.24 -3.08 -0.05 -31.16 16 13 N -0.58 -26.28 5.09 -306.97 -1.56 -27.84 16 14 C -0.33 -18.62 10.16 84.04 0.85 -17.76 16 15 H 0.06 4.23 7.39 -2.91 -0.02 4.20 16 16 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 17 N -0.93 -54.20 13.96 21.66 0.30 -53.90 16 18 Si 0.96 37.83 27.74 68.60 1.90 39.73 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 22 C -0.20 -3.44 4.09 -17.96 -0.07 -3.52 16 23 H 0.13 2.09 5.36 -2.39 -0.01 2.08 16 24 C -0.14 -2.29 6.86 31.18 0.21 -2.08 16 25 C 0.05 0.68 7.76 72.95 0.57 1.24 16 26 O -0.37 -6.92 11.49 -142.37 -1.64 -8.55 16 27 C 0.03 0.46 4.00 22.70 0.09 0.55 16 28 H 0.09 1.42 7.41 -2.39 -0.02 1.40 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.77 8.00 -2.39 -0.02 0.76 16 31 H 0.06 0.76 7.93 -2.39 -0.02 0.74 16 32 H 0.07 0.93 6.00 -2.39 -0.01 0.91 16 33 H 0.08 0.82 7.92 -2.39 -0.02 0.80 16 34 H 0.07 0.76 6.52 -2.39 -0.02 0.74 16 35 H 0.41 6.65 7.05 -92.71 -0.65 6.00 16 36 H 0.41 12.10 7.45 -92.71 -0.69 11.41 16 37 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 40 H 0.28 15.02 8.31 -92.70 -0.77 14.25 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.60 354.41 -1.14 -74.74 By element: Atomic # 1 Polarization: 45.99 SS G_CDS: -0.88 Total: 45.11 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.20 Total: 25.41 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -6.61 Total: -123.50 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: -1.75 Total: -61.49 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -73.60 -1.14 -74.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344835710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.859 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.83 seconds