Wall clock time and date at job start Fri Apr 10 2020 18:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00138 * 2 1 4 4 C 1.50706 * 120.00136 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.41890 * 231.04722 * 4 2 1 6 6 O 1.44425 * 110.36884 * 353.35549 * 4 2 1 7 7 C 1.44419 * 105.27426 * 159.34517 * 6 4 2 8 8 C 1.54485 * 104.80140 * 319.48249 * 7 6 4 9 9 C 1.54472 * 110.37051 * 108.73118 * 4 2 1 10 10 H 1.09004 * 110.62553 * 98.48855 * 9 4 2 11 11 C 1.52995 * 110.51419 * 335.83978 * 9 4 2 12 12 N 1.46507 * 109.47405 * 181.66735 * 11 9 4 13 13 C 1.34765 * 120.00141 * 180.02562 * 12 11 9 14 14 O 1.21584 * 120.00505 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00246 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00158 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46992 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99731 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00165 * 179.72831 * 17 16 15 20 20 C 1.37094 * 120.00050 * 180.27493 * 19 17 16 21 21 H 1.08001 * 120.00100 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00173 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99702 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00235 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47199 * 90.00429 * 24 22 20 26 26 H 1.48498 * 109.47352 * 209.99933 * 24 22 20 27 27 H 1.48493 * 109.47298 * 330.00272 * 24 22 20 28 28 H 1.08002 * 120.00003 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00255 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47552 * 185.05938 * 3 2 1 31 31 H 1.09011 * 109.47129 * 305.05551 * 3 2 1 32 32 H 1.08998 * 109.47829 * 65.05536 * 3 2 1 33 33 H 1.08999 * 110.37555 * 200.65899 * 7 6 4 34 34 H 1.09002 * 110.37656 * 78.31594 * 7 6 4 35 35 H 1.08993 * 110.51404 * 265.33543 * 8 7 6 36 36 H 1.09000 * 110.50743 * 142.62275 * 8 7 6 37 37 H 1.09002 * 109.47001 * 61.66784 * 11 9 4 38 38 H 1.09005 * 109.47195 * 301.66639 * 11 9 4 39 39 H 0.96997 * 119.99358 * 359.97438 * 12 11 9 40 40 H 0.96998 * 119.99406 * 0.02562 * 15 13 12 41 41 H 1.08996 * 109.47165 * 60.00238 * 16 15 13 42 42 H 1.09001 * 109.47222 * 300.00206 * 16 15 13 43 43 H 0.96999 * 119.99645 * 0.27060 * 19 17 16 44 44 H 0.97001 * 120.00130 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.8099 -1.3130 0.7950 6 8 1.1502 -2.4128 0.1577 7 6 1.8618 -3.5663 -0.3411 8 6 2.5994 -3.0607 -1.6008 9 6 2.7351 -1.5389 -1.3707 10 1 3.7856 -1.2497 -1.3381 11 6 2.0009 -0.7635 -2.4664 12 7 2.6314 -1.0325 -3.7612 13 6 2.1501 -0.4527 -4.8785 14 8 1.1923 0.2933 -4.8121 15 7 2.7304 -0.6997 -6.0696 16 6 2.2068 -0.0698 -7.2842 17 6 3.0265 -0.5078 -8.4706 18 8 3.9563 -1.2714 -8.3166 19 7 2.7228 -0.0558 -9.7034 20 6 3.4650 -0.4586 -10.7834 21 1 4.2928 -1.1386 -10.6463 22 6 3.1515 0.0069 -12.0544 23 7 2.1439 0.8339 -12.2213 24 14 4.1632 -0.5414 -13.5258 25 1 3.5704 -1.7750 -14.1022 26 1 4.1668 0.5320 -14.5519 27 1 5.5567 -0.8173 -13.0933 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 3.1317 1.1079 -0.0906 31 1 1.7340 1.9149 -0.8413 32 1 1.8699 1.8365 0.9317 33 1 1.1619 -4.3595 -0.6041 34 1 2.5772 -3.9210 0.4008 35 1 2.0093 -3.2606 -2.4950 36 1 3.5828 -3.5243 -1.6793 37 1 2.0518 0.3041 -2.2523 38 1 0.9579 -1.0785 -2.4978 39 1 3.3957 -1.6273 -3.8141 40 1 3.4943 -1.2952 -6.1227 41 1 2.2621 1.0141 -7.1842 42 1 1.1687 -0.3687 -7.4300 43 1 1.9790 0.5545 -9.8266 44 1 1.9252 1.1592 -13.1085 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346227000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:44 Heat of formation + Delta-G solvation = -97.910730 kcal Electronic energy + Delta-G solvation = -25466.554727 eV Core-core repulsion = 21612.307546 eV Total energy + Delta-G solvation = -3854.247181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57175 -39.57239 -38.17263 -35.62149 -35.02159 -34.37228 -33.62155 -32.11940 -31.35770 -29.29590 -27.74376 -27.44016 -25.67426 -24.25078 -23.18684 -20.99767 -20.67699 -19.57691 -18.87402 -18.28267 -17.87411 -17.06085 -16.38621 -15.87899 -15.66546 -15.58607 -15.42791 -14.77346 -14.51904 -14.32173 -14.12671 -13.93777 -13.85273 -13.43960 -13.39433 -13.14088 -12.93190 -12.30801 -12.16789 -12.06741 -11.89222 -11.62915 -11.56346 -11.39068 -11.36109 -11.12128 -10.87115 -10.46055 -10.32007 -10.24005 -9.98861 -9.63265 -9.20640 -9.12184 -8.61948 -8.57350 -8.09542 -6.51013 -3.93065 1.99987 2.81456 3.11734 3.22108 3.27470 3.43243 3.47914 3.75936 4.08007 4.10396 4.24292 4.37415 4.62485 4.69234 4.77977 4.86674 4.91541 4.99289 5.07115 5.17727 5.18029 5.30086 5.35971 5.39659 5.43993 5.62197 5.67012 5.75727 5.84694 5.87870 5.95353 6.02301 6.09318 6.29173 6.43209 6.52099 6.73883 6.77425 7.11001 7.46282 7.92884 8.25840 8.45792 8.82380 9.05062 9.40168 9.88063 10.65941 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.002209 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.859968 B =12674.541811 C =13188.812547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.116 4.116 4 C 0.123 3.877 5 H 0.080 0.920 6 O -0.366 6.366 7 C 0.046 3.954 8 C -0.156 4.156 9 C -0.126 4.126 10 H 0.092 0.908 11 C 0.152 3.848 12 N -0.750 5.750 13 C 0.704 3.296 14 O -0.597 6.597 15 N -0.725 5.725 16 C 0.129 3.871 17 C 0.429 3.571 18 O -0.599 6.599 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.269 1.269 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.395 0.605 40 H 0.406 0.594 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 -3.869 24.362 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.173 4.173 4 C 0.064 3.936 5 H 0.098 0.902 6 O -0.285 6.285 7 C -0.031 4.031 8 C -0.194 4.194 9 C -0.145 4.145 10 H 0.111 0.889 11 C 0.028 3.972 12 N -0.407 5.407 13 C 0.404 3.596 14 O -0.475 6.475 15 N -0.383 5.383 16 C 0.000 4.000 17 C 0.215 3.785 18 O -0.485 6.485 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.123 0.877 22 C -0.178 4.178 23 N -0.535 5.535 24 Si 0.760 3.240 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.228 0.772 40 H 0.243 0.757 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.415 -3.565 24.387 24.650 hybrid contribution 0.908 -0.467 -1.062 1.473 sum 0.493 -4.032 23.325 23.676 Atomic orbital electron populations 1.23735 0.95393 1.02395 0.98667 1.21427 0.95747 0.93883 1.03022 1.20815 0.99905 0.94071 1.02465 1.21744 0.90608 0.86062 0.95155 0.90208 1.89133 1.38282 1.16802 1.84304 1.23396 0.96004 0.89504 0.94183 1.23103 1.01946 0.94480 0.99841 1.22758 1.00911 0.95678 0.95168 0.88938 1.21238 0.96552 0.99710 0.79736 1.45074 1.36721 1.52596 1.06277 1.15843 0.82632 0.80867 0.80307 1.90908 1.29377 1.41294 1.85964 1.44772 1.36439 1.52065 1.04974 1.20775 0.97827 0.98115 0.83261 1.19774 0.87850 0.86495 0.84413 1.90487 1.33039 1.40062 1.84949 1.41789 1.29994 1.41555 1.05081 1.19720 1.12566 1.26622 0.84513 0.87709 1.25326 0.96944 0.96287 0.99194 1.69617 1.27711 1.31670 1.24489 0.85812 0.79920 0.78164 0.80123 1.20274 1.20798 1.19341 0.88326 0.87351 0.91970 0.90937 0.91401 0.88871 0.92156 0.89787 0.90060 0.90931 0.91303 0.77187 0.75684 0.90047 0.90049 0.77004 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 13.66 29.02 0.40 -1.16 16 2 C -0.14 -1.23 3.64 -101.06 -0.37 -1.60 16 3 C -0.12 -0.85 8.99 36.00 0.32 -0.53 16 4 C 0.12 1.00 3.47 -27.11 -0.09 0.91 16 5 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 6 O -0.37 -3.52 9.82 -35.23 -0.35 -3.87 16 7 C 0.05 0.32 7.63 37.94 0.29 0.61 16 8 C -0.16 -1.08 6.31 -25.16 -0.16 -1.24 16 9 C -0.13 -0.97 3.10 -89.06 -0.28 -1.25 16 10 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 11 C 0.15 1.65 3.94 -4.04 -0.02 1.63 16 12 N -0.75 -8.98 5.24 -65.22 -0.34 -9.33 16 13 C 0.70 11.58 8.57 -86.92 -0.74 10.83 16 14 O -0.60 -11.92 16.34 5.29 0.09 -11.83 16 15 N -0.72 -12.27 5.53 -66.42 -0.37 -12.63 16 16 C 0.13 2.42 6.15 -5.19 -0.03 2.39 16 17 C 0.43 9.87 7.85 -10.98 -0.09 9.79 16 18 O -0.60 -15.28 15.24 5.54 0.08 -15.19 16 19 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 20 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 21 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 24 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H 0.10 0.84 8.05 -52.49 -0.42 0.42 16 29 H 0.11 1.11 6.91 -52.49 -0.36 0.75 16 30 H 0.06 0.40 8.01 -51.93 -0.42 -0.02 16 31 H 0.07 0.59 7.78 -51.92 -0.40 0.19 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.69 7.59 -51.93 -0.39 0.30 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.85 5.90 -51.93 -0.31 0.54 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.39 3.74 8.24 -40.82 -0.34 3.40 16 40 H 0.41 6.61 7.45 -40.82 -0.30 6.31 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -32.52 366.38 -7.31 -39.83 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -6.58 Total: 16.44 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.01 Total: 12.52 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.04 Total: -58.93 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.18 Total: -30.89 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.52 -7.31 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346227000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.083 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds