Wall clock time and date at job start Fri Apr 10 2020 18:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00138 * 2 1 4 4 C 1.50706 * 120.00136 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.41890 * 231.04722 * 4 2 1 6 6 O 1.44425 * 110.36884 * 353.35549 * 4 2 1 7 7 C 1.44419 * 105.27426 * 159.34517 * 6 4 2 8 8 C 1.54485 * 104.80140 * 319.48249 * 7 6 4 9 9 C 1.54472 * 110.37051 * 108.73118 * 4 2 1 10 10 H 1.09004 * 110.62553 * 98.48855 * 9 4 2 11 11 C 1.52995 * 110.51419 * 335.83978 * 9 4 2 12 12 N 1.46507 * 109.47405 * 181.66735 * 11 9 4 13 13 C 1.34765 * 120.00141 * 180.02562 * 12 11 9 14 14 O 1.21584 * 120.00505 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00246 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00158 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46992 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99731 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00165 * 179.72831 * 17 16 15 20 20 C 1.37094 * 120.00050 * 180.27493 * 19 17 16 21 21 H 1.08001 * 120.00100 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00173 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99702 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00235 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47199 * 90.00429 * 24 22 20 26 26 H 1.48498 * 109.47352 * 209.99933 * 24 22 20 27 27 H 1.48493 * 109.47298 * 330.00272 * 24 22 20 28 28 H 1.08002 * 120.00003 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00255 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47552 * 185.05938 * 3 2 1 31 31 H 1.09011 * 109.47129 * 305.05551 * 3 2 1 32 32 H 1.08998 * 109.47829 * 65.05536 * 3 2 1 33 33 H 1.08999 * 110.37555 * 200.65899 * 7 6 4 34 34 H 1.09002 * 110.37656 * 78.31594 * 7 6 4 35 35 H 1.08993 * 110.51404 * 265.33543 * 8 7 6 36 36 H 1.09000 * 110.50743 * 142.62275 * 8 7 6 37 37 H 1.09002 * 109.47001 * 61.66784 * 11 9 4 38 38 H 1.09005 * 109.47195 * 301.66639 * 11 9 4 39 39 H 0.96997 * 119.99358 * 359.97438 * 12 11 9 40 40 H 0.96998 * 119.99406 * 0.02562 * 15 13 12 41 41 H 1.08996 * 109.47165 * 60.00238 * 16 15 13 42 42 H 1.09001 * 109.47222 * 300.00206 * 16 15 13 43 43 H 0.96999 * 119.99645 * 0.27060 * 19 17 16 44 44 H 0.97001 * 120.00130 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.8099 -1.3130 0.7950 6 8 1.1502 -2.4128 0.1577 7 6 1.8618 -3.5663 -0.3411 8 6 2.5994 -3.0607 -1.6008 9 6 2.7351 -1.5389 -1.3707 10 1 3.7856 -1.2497 -1.3381 11 6 2.0009 -0.7635 -2.4664 12 7 2.6314 -1.0325 -3.7612 13 6 2.1501 -0.4527 -4.8785 14 8 1.1923 0.2933 -4.8121 15 7 2.7304 -0.6997 -6.0696 16 6 2.2068 -0.0698 -7.2842 17 6 3.0265 -0.5078 -8.4706 18 8 3.9563 -1.2714 -8.3166 19 7 2.7228 -0.0558 -9.7034 20 6 3.4650 -0.4586 -10.7834 21 1 4.2928 -1.1386 -10.6463 22 6 3.1515 0.0069 -12.0544 23 7 2.1439 0.8339 -12.2213 24 14 4.1632 -0.5414 -13.5258 25 1 3.5704 -1.7750 -14.1022 26 1 4.1668 0.5320 -14.5519 27 1 5.5567 -0.8173 -13.0933 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 3.1317 1.1079 -0.0906 31 1 1.7340 1.9149 -0.8413 32 1 1.8699 1.8365 0.9317 33 1 1.1619 -4.3595 -0.6041 34 1 2.5772 -3.9210 0.4008 35 1 2.0093 -3.2606 -2.4950 36 1 3.5828 -3.5243 -1.6793 37 1 2.0518 0.3041 -2.2523 38 1 0.9579 -1.0785 -2.4978 39 1 3.3957 -1.6273 -3.8141 40 1 3.4943 -1.2952 -6.1227 41 1 2.2621 1.0141 -7.1842 42 1 1.1687 -0.3687 -7.4300 43 1 1.9790 0.5545 -9.8266 44 1 1.9252 1.1592 -13.1085 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346227000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:43 Heat of formation + Delta-G solvation = -122.592634 kcal Electronic energy + Delta-G solvation = -25467.625015 eV Core-core repulsion = 21612.307546 eV Total energy + Delta-G solvation = -3855.317469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46244 -40.76876 -39.93652 -36.49674 -36.18721 -35.84679 -35.25644 -33.38584 -32.91970 -30.03728 -29.14215 -28.09109 -26.94143 -25.86247 -23.79680 -22.03567 -21.63586 -21.34919 -20.12693 -19.78256 -19.14537 -17.87792 -17.39924 -17.22221 -16.88876 -16.78044 -16.46580 -16.27846 -15.92808 -15.81887 -15.22620 -15.21264 -14.90932 -14.71577 -14.08080 -13.95545 -13.90784 -13.74028 -13.53858 -13.49668 -12.91682 -12.89653 -12.62187 -12.45115 -12.21715 -12.12263 -12.06409 -12.04252 -11.56391 -11.49749 -11.44970 -10.80012 -10.55058 -10.43142 -10.09849 -9.88999 -9.80389 -8.50496 -6.00763 1.29833 1.36941 1.42877 1.54195 1.61249 1.90292 2.12202 2.29050 2.87776 3.05547 3.16844 3.31869 3.46675 3.62329 3.88575 4.08145 4.21500 4.22822 4.27143 4.34248 4.40982 4.44106 4.46656 4.57783 4.69060 4.74480 4.84569 4.86279 4.91354 5.02358 5.09320 5.17042 5.20141 5.31528 5.39202 5.47227 5.64678 5.76377 5.91715 5.96283 6.09885 6.48524 7.03896 7.04050 7.43378 7.54041 7.94800 8.66515 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.002209 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.859968 B =12674.541811 C =13188.812547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C -0.115 4.115 4 C 0.120 3.880 5 H 0.101 0.899 6 O -0.391 6.391 7 C 0.041 3.959 8 C -0.153 4.153 9 C -0.117 4.117 10 H 0.117 0.883 11 C 0.154 3.846 12 N -0.729 5.729 13 C 0.703 3.297 14 O -0.633 6.633 15 N -0.723 5.723 16 C 0.142 3.858 17 C 0.435 3.565 18 O -0.623 6.623 19 N -0.560 5.560 20 C -0.336 4.336 21 H 0.087 0.913 22 C -0.012 4.012 23 N -0.917 5.917 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.269 1.269 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.399 0.601 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -4.389 25.044 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.139 4.139 3 C -0.171 4.171 4 C 0.062 3.938 5 H 0.119 0.881 6 O -0.311 6.311 7 C -0.035 4.035 8 C -0.190 4.190 9 C -0.136 4.136 10 H 0.135 0.865 11 C 0.031 3.969 12 N -0.386 5.386 13 C 0.403 3.597 14 O -0.515 6.515 15 N -0.381 5.381 16 C 0.013 3.987 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.466 4.466 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.821 3.179 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.194 1.194 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.247 0.753 40 H 0.248 0.752 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.233 0.767 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.076 -4.108 25.107 25.464 hybrid contribution 0.425 -0.324 -1.187 1.302 sum 1.501 -4.432 23.920 24.373 Atomic orbital electron populations 1.23727 0.96027 1.01991 1.00485 1.21715 0.95687 0.95030 1.01474 1.20831 1.00491 0.93206 1.02606 1.21899 0.90689 0.85368 0.95879 0.88133 1.89124 1.39504 1.17863 1.84613 1.23561 0.96366 0.88873 0.94689 1.23101 1.02963 0.93879 0.99085 1.22737 1.01596 0.95789 0.93496 0.86459 1.21266 0.95795 0.99899 0.79979 1.44933 1.36620 1.51636 1.05418 1.15966 0.82203 0.80731 0.80848 1.90887 1.31051 1.43056 1.86501 1.44666 1.36623 1.52154 1.04649 1.20573 0.97260 0.98670 0.82217 1.20393 0.87360 0.85192 0.84878 1.90464 1.34203 1.40942 1.85511 1.41841 1.30182 1.42095 1.05409 1.19738 1.13186 1.27698 0.85935 0.89495 1.26141 0.97817 0.95950 1.01308 1.69685 1.28542 1.32061 1.25419 0.84861 0.78243 0.78090 0.76753 1.19572 1.19705 1.19359 0.88000 0.88682 0.90554 0.91982 0.90279 0.88772 0.90203 0.91380 0.87606 0.91585 0.93729 0.75343 0.75163 0.89091 0.89271 0.76721 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 13.66 67.78 0.93 -2.67 16 2 C -0.14 -2.32 3.64 -16.48 -0.06 -2.38 16 3 C -0.11 -1.53 8.99 71.23 0.64 -0.89 16 4 C 0.12 1.74 3.47 30.35 0.11 1.85 16 5 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 6 O -0.39 -7.14 9.82 -148.98 -1.46 -8.61 16 7 C 0.04 0.51 7.63 72.49 0.55 1.06 16 8 C -0.15 -1.76 6.31 31.61 0.20 -1.56 16 9 C -0.12 -1.54 3.10 -9.78 -0.03 -1.57 16 10 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 11 C 0.15 3.21 3.94 86.38 0.34 3.55 16 12 N -0.73 -16.43 5.24 -478.53 -2.51 -18.94 16 13 C 0.70 22.52 8.57 179.06 1.53 24.06 16 14 O -0.63 -25.18 16.34 -3.98 -0.07 -25.24 16 15 N -0.72 -23.78 5.53 -482.31 -2.67 -26.45 16 16 C 0.14 5.25 6.15 85.63 0.53 5.78 16 17 C 0.43 20.00 7.85 87.66 0.69 20.69 16 18 O -0.62 -31.80 15.24 -3.09 -0.05 -31.85 16 19 N -0.56 -28.11 5.29 -306.98 -1.62 -29.74 16 20 C -0.34 -18.46 9.68 84.04 0.81 -17.65 16 21 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 22 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 23 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 24 Si 1.00 41.59 29.55 68.60 2.03 43.61 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.10 1.81 8.05 -2.91 -0.02 1.79 16 29 H 0.09 2.07 6.91 -2.91 -0.02 2.05 16 30 H 0.08 0.79 8.01 -2.38 -0.02 0.78 16 31 H 0.06 0.97 7.78 -2.38 -0.02 0.95 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 1.02 7.59 -2.39 -0.02 1.00 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 1.49 5.90 -2.39 -0.01 1.48 16 38 H 0.04 1.17 8.08 -2.38 -0.02 1.15 16 39 H 0.41 6.82 8.24 -92.71 -0.76 6.06 16 40 H 0.41 12.90 7.45 -92.71 -0.69 12.21 16 41 H 0.09 3.24 8.14 -2.39 -0.02 3.23 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 44 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -69.92 366.38 -0.51 -70.43 By element: Atomic # 1 Polarization: 46.34 SS G_CDS: -1.15 Total: 45.19 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 6.70 Total: 30.12 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -6.52 Total: -123.65 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: -1.58 Total: -65.70 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -69.92 -0.51 -70.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346227000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.164 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds