Wall clock time and date at job start Fri Apr 10 2020 18:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99684 * 2 1 4 4 C 1.50696 * 120.00074 * 179.97438 * 2 1 3 5 5 H 1.08995 * 110.33236 * 133.73066 * 4 2 1 6 6 O 1.44431 * 110.37272 * 11.48005 * 4 2 1 7 7 C 1.44421 * 105.27426 * 200.65679 * 6 4 2 8 8 C 1.54480 * 104.80277 * 40.51744 * 7 6 4 9 9 C 1.54476 * 110.37149 * 256.10544 * 4 2 1 10 10 H 1.09002 * 110.51027 * 261.45281 * 9 4 2 11 11 C 1.52999 * 110.51383 * 24.16308 * 9 4 2 12 12 N 1.46496 * 109.47514 * 182.66105 * 11 9 4 13 13 C 1.34779 * 120.00291 * 180.02562 * 12 11 9 14 14 O 1.21583 * 119.99884 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00119 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00257 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47496 * 180.02562 * 16 15 13 18 18 O 1.21294 * 120.00068 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00328 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00504 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99283 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00256 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00238 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00222 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47018 * 59.99900 * 24 22 20 26 26 H 1.48498 * 109.47532 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47035 * 300.00672 * 24 22 20 28 28 H 1.07999 * 120.00133 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.99959 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47467 * 355.06129 * 3 2 1 31 31 H 1.08995 * 109.47320 * 115.06515 * 3 2 1 32 32 H 1.09005 * 109.46910 * 235.06413 * 3 2 1 33 33 H 1.09009 * 110.36942 * 159.34347 * 7 6 4 34 34 H 1.08996 * 110.37586 * 281.67779 * 7 6 4 35 35 H 1.08999 * 110.51214 * 94.66787 * 8 7 6 36 36 H 1.08998 * 110.50867 * 217.23314 * 8 7 6 37 37 H 1.09000 * 109.46932 * 302.65702 * 11 9 4 38 38 H 1.08994 * 109.47164 * 62.65606 * 11 9 4 39 39 H 0.97002 * 120.00208 * 359.97438 * 12 11 9 40 40 H 0.97002 * 120.00380 * 359.97438 * 15 13 12 41 41 H 1.09004 * 109.46954 * 299.99463 * 16 15 13 42 42 H 1.08994 * 109.47477 * 59.99246 * 16 15 13 43 43 H 0.97005 * 120.00156 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00212 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 2.8648 -1.2801 -0.7379 6 8 1.1659 -2.4041 -0.2684 7 6 1.8409 -3.5782 0.2331 8 6 2.4837 -3.1260 1.5630 9 6 2.6336 -1.5962 1.4065 10 1 3.6834 -1.3079 1.4602 11 6 1.8201 -0.8657 2.4767 12 7 2.4173 -1.1058 3.7927 13 6 1.8652 -0.5579 4.8935 14 8 0.8719 0.1361 4.7941 15 7 2.4143 -0.7793 6.1042 16 6 1.8139 -0.1842 7.3007 17 6 2.6130 -0.5823 8.5148 18 8 3.5879 -1.2936 8.3927 19 7 2.2445 -0.1480 9.7362 20 6 2.9711 -0.5106 10.8409 21 1 3.8391 -1.1440 10.7321 22 6 2.5915 -0.0624 12.1000 23 7 1.5356 0.7086 12.2323 24 14 3.5819 -0.5559 13.6050 25 1 4.9786 -0.0732 13.4584 26 1 2.9737 0.0478 14.8177 27 1 3.5807 -2.0353 13.7351 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.3584 2.1317 -0.0885 31 1 2.6222 1.4021 0.9308 32 1 2.7548 1.3255 -0.8425 33 1 1.1248 -4.3805 0.4113 34 1 2.6090 -3.9031 -0.4686 35 1 1.8302 -3.3619 2.4028 36 1 3.4583 -3.5958 1.6952 37 1 1.8214 0.2040 2.2670 38 1 0.7951 -1.2360 2.4698 39 1 3.2096 -1.6598 3.8721 40 1 3.2066 -1.3332 6.1835 41 1 1.8147 0.9017 7.2058 42 1 0.7889 -0.5388 7.4076 43 1 1.4651 0.4212 9.8339 44 1 1.2703 1.0212 13.1114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346227004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:49 Heat of formation + Delta-G solvation = -122.282982 kcal Electronic energy + Delta-G solvation = -25455.063925 eV Core-core repulsion = 21599.759884 eV Total energy + Delta-G solvation = -3855.304041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45933 -40.77112 -39.93695 -36.50403 -36.18962 -35.83869 -35.25674 -33.38569 -32.93022 -30.04213 -29.14373 -28.06168 -26.94927 -25.86786 -23.78844 -22.03016 -21.68099 -21.35026 -20.12614 -19.78436 -19.15397 -17.88856 -17.39744 -17.19142 -16.89432 -16.76937 -16.46132 -16.27837 -15.94484 -15.82713 -15.23817 -15.20364 -14.94987 -14.78355 -14.01525 -13.94848 -13.86148 -13.72166 -13.53140 -13.48230 -12.97159 -12.89165 -12.54137 -12.46373 -12.26325 -12.13375 -12.04830 -12.03371 -11.55424 -11.50938 -11.44624 -10.79505 -10.54987 -10.42958 -10.09820 -9.91298 -9.80844 -8.50194 -6.00634 1.29590 1.38730 1.42815 1.52872 1.60872 1.90558 2.12174 2.29182 2.88752 3.05674 3.17036 3.31938 3.47670 3.61364 3.87833 4.06993 4.21530 4.22274 4.26423 4.35302 4.40448 4.44140 4.46658 4.58747 4.67355 4.74108 4.85579 4.86224 4.92365 5.01669 5.08072 5.17680 5.18881 5.31469 5.39074 5.47259 5.64632 5.77602 5.91723 5.96340 6.08988 6.48634 7.03884 7.04062 7.43450 7.54047 7.94880 8.66546 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.030559 B = 0.002202 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.039651 B =12713.457504 C =13207.979316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C -0.115 4.115 4 C 0.120 3.880 5 H 0.100 0.900 6 O -0.391 6.391 7 C 0.041 3.959 8 C -0.152 4.152 9 C -0.117 4.117 10 H 0.117 0.883 11 C 0.154 3.846 12 N -0.730 5.730 13 C 0.703 3.297 14 O -0.633 6.633 15 N -0.723 5.723 16 C 0.142 3.858 17 C 0.435 3.565 18 O -0.623 6.623 19 N -0.560 5.560 20 C -0.337 4.337 21 H 0.087 0.913 22 C -0.011 4.011 23 N -0.917 5.917 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.399 0.601 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -4.217 -24.947 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.141 4.141 3 C -0.172 4.172 4 C 0.062 3.938 5 H 0.118 0.882 6 O -0.311 6.311 7 C -0.035 4.035 8 C -0.189 4.189 9 C -0.136 4.136 10 H 0.135 0.865 11 C 0.030 3.970 12 N -0.386 5.386 13 C 0.402 3.598 14 O -0.515 6.515 15 N -0.381 5.381 16 C 0.013 3.987 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.467 4.467 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.247 0.753 40 H 0.248 0.752 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.233 0.767 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.214 -3.950 -25.037 25.444 hybrid contribution 0.414 -0.310 1.200 1.307 sum 2.628 -4.260 -23.837 24.357 Atomic orbital electron populations 1.23793 0.95927 1.01996 1.00216 1.21701 0.95701 0.95083 1.01596 1.20883 1.00511 0.92926 1.02878 1.21853 0.91451 0.85499 0.95006 0.88201 1.89130 1.42888 1.16993 1.82065 1.23563 0.97333 0.88490 0.94115 1.23096 1.03254 0.93935 0.98664 1.22729 1.01465 0.95862 0.93564 0.86487 1.21293 0.96002 1.00202 0.79492 1.44936 1.33358 1.55239 1.05089 1.15968 0.82588 0.80358 0.80839 1.90889 1.28814 1.45387 1.86384 1.44664 1.33615 1.55655 1.04146 1.20571 0.96513 0.99297 0.82339 1.20387 0.87448 0.84933 0.85071 1.90462 1.31263 1.43237 1.86166 1.41838 1.27695 1.44804 1.05168 1.19706 1.10836 1.30765 0.85352 0.89482 1.26139 0.97568 0.95859 1.01619 1.69678 1.25579 1.34049 1.26386 0.84924 0.78074 0.78643 0.76324 1.19412 1.19705 1.19459 0.88767 0.87961 0.91480 0.91371 0.89936 0.88724 0.90217 0.91429 0.87670 0.91594 0.93669 0.75339 0.75157 0.89116 0.89254 0.76722 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.56 13.46 67.78 0.91 -2.65 16 2 C -0.14 -2.36 3.48 -16.50 -0.06 -2.42 16 3 C -0.12 -1.54 9.85 71.23 0.70 -0.83 16 4 C 0.12 1.75 3.54 30.35 0.11 1.86 16 5 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 6 O -0.39 -7.12 9.88 -148.98 -1.47 -8.59 16 7 C 0.04 0.50 7.63 72.49 0.55 1.06 16 8 C -0.15 -1.75 6.49 31.61 0.21 -1.55 16 9 C -0.12 -1.55 3.08 -9.78 -0.03 -1.58 16 10 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 11 C 0.15 3.20 3.91 86.38 0.34 3.54 16 12 N -0.73 -16.42 5.39 -478.55 -2.58 -19.00 16 13 C 0.70 22.51 8.57 179.05 1.53 24.05 16 14 O -0.63 -25.18 16.34 -3.98 -0.07 -25.24 16 15 N -0.72 -23.77 5.53 -482.32 -2.67 -26.44 16 16 C 0.14 5.25 6.15 85.63 0.53 5.77 16 17 C 0.43 19.99 7.85 87.66 0.69 20.68 16 18 O -0.62 -31.79 15.24 -3.07 -0.05 -31.83 16 19 N -0.56 -28.10 5.29 -307.00 -1.62 -29.73 16 20 C -0.34 -18.51 9.68 84.04 0.81 -17.70 16 21 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 22 C -0.01 -0.58 5.50 84.92 0.47 -0.12 16 23 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 24 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H 0.09 2.06 6.96 -2.91 -0.02 2.04 16 29 H 0.10 1.83 7.84 -2.91 -0.02 1.81 16 30 H 0.07 0.89 7.79 -2.39 -0.02 0.88 16 31 H 0.07 0.94 6.97 -2.39 -0.02 0.93 16 32 H 0.08 0.80 8.14 -2.38 -0.02 0.79 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 1.01 7.71 -2.39 -0.02 1.00 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 1.51 5.49 -2.39 -0.01 1.50 16 38 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.41 6.81 8.39 -92.71 -0.78 6.03 16 40 H 0.41 12.89 7.45 -92.71 -0.69 12.20 16 41 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.40 19.32 7.90 -92.70 -0.73 18.59 16 44 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -69.81 365.98 -0.54 -70.36 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: -1.16 Total: 45.31 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 6.76 Total: 30.11 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.59 Total: -123.70 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -1.58 Total: -65.66 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -69.81 -0.54 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346227004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.928 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds