Wall clock time and date at job start Fri Apr 10 2020 18:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00025 * 2 1 4 4 C 1.50704 * 120.00149 * 180.02562 * 2 1 3 5 5 H 1.09008 * 109.98943 * 5.36709 * 4 2 1 6 6 O 1.43740 * 109.88084 * 126.44725 * 4 2 1 7 7 C 1.44386 * 106.97317 * 145.93715 * 6 4 2 8 8 C 1.54994 * 103.49169 * 319.94259 * 7 6 4 9 9 C 1.54094 * 109.88026 * 244.28525 * 4 2 1 10 10 H 1.09002 * 110.48910 * 357.22072 * 9 4 2 11 11 C 1.53006 * 110.60291 * 119.81072 * 9 4 2 12 12 N 1.46503 * 109.46994 * 181.28663 * 11 9 4 13 13 C 1.34779 * 119.99866 * 180.02562 * 12 11 9 14 14 O 1.21588 * 119.99688 * 0.02562 * 13 12 11 15 15 N 1.34767 * 120.00122 * 179.97438 * 13 12 11 16 16 C 1.46495 * 120.00249 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47527 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99654 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00024 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99833 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00104 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00096 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99990 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99979 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47214 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46919 * 119.99841 * 24 22 20 27 27 H 1.48503 * 109.46951 * 239.99576 * 24 22 20 28 28 H 1.07996 * 119.99955 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.00213 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47393 * 270.00041 * 3 2 1 31 31 H 1.09001 * 109.47338 * 30.00499 * 3 2 1 32 32 H 1.09002 * 109.47071 * 150.00380 * 3 2 1 33 33 H 1.08998 * 110.61222 * 78.44803 * 7 6 4 34 34 H 1.08995 * 110.61685 * 201.28199 * 7 6 4 35 35 H 1.09004 * 110.90489 * 155.21801 * 8 7 6 36 36 H 1.08995 * 110.91026 * 278.78756 * 8 7 6 37 37 H 1.09001 * 109.47159 * 301.28657 * 11 9 4 38 38 H 1.08996 * 109.46535 * 61.28737 * 11 9 4 39 39 H 0.96997 * 120.00046 * 359.97438 * 12 11 9 40 40 H 0.97004 * 120.00223 * 0.02562 * 15 13 12 41 41 H 1.08995 * 109.47469 * 300.00391 * 16 15 13 42 42 H 1.09008 * 109.47274 * 60.00196 * 16 15 13 43 43 H 0.96998 * 120.00392 * 0.02562 * 19 17 16 44 44 H 0.96998 * 119.99720 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3666 -2.1378 -0.0968 6 8 3.0034 -1.3264 -1.0879 7 6 4.1556 -2.0691 -0.6347 8 6 4.3359 -1.5981 0.8309 9 6 2.8701 -1.4451 1.3050 10 1 2.7591 -0.5518 1.9196 11 6 2.4261 -2.6864 2.0816 12 7 3.1859 -2.7784 3.3308 13 6 2.9625 -3.7995 4.1817 14 8 2.1307 -4.6444 3.9123 15 7 3.6618 -3.8845 5.3306 16 6 3.4195 -4.9946 6.2553 17 6 4.3239 -4.8576 7.4530 18 8 5.0947 -3.9241 7.5271 19 7 4.2754 -5.7717 8.4421 20 6 5.0978 -5.6467 9.5319 21 1 5.7848 -4.8159 9.5976 22 6 5.0482 -6.5893 10.5515 23 7 4.2126 -7.6005 10.4715 24 14 6.1692 -6.4193 12.0360 25 1 7.0095 -5.2043 11.8852 26 1 5.3465 -6.3032 13.2668 27 1 7.0432 -7.6158 12.1359 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 2.2451 1.6198 -1.0277 31 1 1.4744 2.0647 0.5139 32 1 3.0159 1.1747 0.5138 33 1 3.9604 -3.1408 -0.6722 34 1 5.0326 -1.8189 -1.2314 35 1 4.8586 -2.3515 1.4202 36 1 4.8598 -0.6432 0.8709 37 1 1.3624 -2.6122 2.3080 38 1 2.6082 -3.5762 1.4791 39 1 3.8503 -2.1050 3.5451 40 1 4.3257 -3.2107 5.5454 41 1 2.3794 -4.9759 6.5808 42 1 3.6254 -5.9390 5.7512 43 1 3.6586 -6.5180 8.3831 44 1 4.1783 -8.2587 11.1831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346227006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:52 Heat of formation + Delta-G solvation = -125.131809 kcal Electronic energy + Delta-G solvation = -25147.485913 eV Core-core repulsion = 21292.058338 eV Total energy + Delta-G solvation = -3855.427576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43707 -40.76269 -39.95024 -36.44068 -36.13521 -36.01252 -35.26694 -33.38777 -32.92476 -30.19491 -29.15386 -28.16064 -26.84468 -25.77968 -23.85787 -22.04628 -21.62575 -21.34192 -20.13455 -19.79819 -19.55432 -17.58627 -17.43398 -17.26930 -16.88007 -16.70915 -16.49115 -16.27475 -15.89214 -15.82891 -15.30423 -15.13129 -15.01493 -14.40269 -14.37621 -13.97095 -13.95098 -13.80988 -13.54455 -13.49331 -12.93178 -12.91165 -12.55526 -12.43968 -12.42126 -12.11095 -12.09934 -11.94077 -11.63684 -11.57392 -11.44926 -10.72192 -10.55026 -10.45021 -10.09786 -10.02699 -9.83386 -8.50631 -6.00733 1.18269 1.35623 1.43057 1.54739 1.61047 1.90258 2.10791 2.28921 3.01979 3.03154 3.16716 3.28333 3.46560 3.60659 3.80859 4.03261 4.06324 4.17503 4.21725 4.27567 4.38665 4.44285 4.46977 4.60661 4.66689 4.76891 4.85263 4.87895 4.90747 4.96895 5.06936 5.14652 5.17325 5.30811 5.39328 5.43129 5.64856 5.82173 5.90863 5.94056 5.96657 6.48555 7.01820 7.04164 7.43213 7.52386 7.95001 8.66509 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.032291 B = 0.002034 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.901494 B =13762.095643 C =13862.256792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 C -0.111 4.111 4 C 0.119 3.881 5 H 0.072 0.928 6 O -0.384 6.384 7 C 0.040 3.960 8 C -0.148 4.148 9 C -0.117 4.117 10 H 0.105 0.895 11 C 0.152 3.848 12 N -0.729 5.729 13 C 0.705 3.295 14 O -0.633 6.633 15 N -0.723 5.723 16 C 0.142 3.858 17 C 0.434 3.566 18 O -0.623 6.623 19 N -0.560 5.560 20 C -0.335 4.335 21 H 0.087 0.913 22 C -0.012 4.012 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.411 0.589 40 H 0.411 0.589 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.399 0.601 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 13.897 -20.721 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.139 4.139 3 C -0.168 4.168 4 C 0.061 3.939 5 H 0.090 0.910 6 O -0.304 6.304 7 C -0.036 4.036 8 C -0.186 4.186 9 C -0.136 4.136 10 H 0.123 0.877 11 C 0.027 3.973 12 N -0.386 5.386 13 C 0.404 3.596 14 O -0.514 6.514 15 N -0.381 5.381 16 C 0.013 3.987 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.196 5.196 20 C -0.464 4.464 21 H 0.105 0.895 22 C -0.213 4.213 23 N -0.557 5.557 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.249 0.751 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.233 0.767 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.664 13.671 -20.984 25.311 hybrid contribution 0.579 -0.258 1.157 1.319 sum -3.085 13.413 -19.827 24.136 Atomic orbital electron populations 1.23936 0.94958 1.03064 0.99816 1.21776 0.95440 0.95337 1.01377 1.20753 1.00191 0.93517 1.02333 1.21698 0.91087 0.95581 0.85500 0.90992 1.88916 1.29356 1.75488 1.36592 1.23720 0.89056 0.95981 0.94856 1.23251 0.95266 1.03667 0.96383 1.22701 0.95904 0.98431 0.96543 0.87715 1.21182 0.95360 0.97587 0.83124 1.44873 1.44722 1.27724 1.21242 1.15930 0.81061 0.82430 0.80160 1.90891 1.39228 1.43659 1.77656 1.44667 1.43757 1.29864 1.19787 1.20581 0.98969 0.90860 0.88305 1.20413 0.87199 0.84456 0.85781 1.90466 1.44386 1.35287 1.81006 1.41850 1.35988 1.24194 1.17548 1.19767 1.18175 1.10935 0.97561 0.89526 1.26141 0.98846 0.94576 1.01721 1.69690 1.37089 1.13284 1.35595 0.84805 0.77721 0.78431 0.76981 1.19374 1.19690 1.19696 0.86651 0.88090 0.91526 0.91018 0.91589 0.92090 0.87402 0.89370 0.88777 0.92018 0.92131 0.75260 0.75148 0.89098 0.89055 0.76699 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 13.91 67.78 0.94 -1.48 16 2 C -0.14 -2.04 4.94 -16.48 -0.08 -2.12 16 3 C -0.11 -1.36 9.71 71.23 0.69 -0.67 16 4 C 0.12 1.88 3.30 30.22 0.10 1.98 16 5 H 0.07 1.19 7.38 -2.38 -0.02 1.17 16 6 O -0.38 -6.92 11.02 -148.98 -1.64 -8.57 16 7 C 0.04 0.53 7.72 72.66 0.56 1.10 16 8 C -0.15 -1.72 6.49 31.89 0.21 -1.51 16 9 C -0.12 -1.59 2.37 -9.80 -0.02 -1.61 16 10 H 0.10 1.28 7.19 -2.39 -0.02 1.27 16 11 C 0.15 2.83 4.82 86.38 0.42 3.25 16 12 N -0.73 -15.38 5.11 -478.53 -2.45 -17.83 16 13 C 0.70 21.56 8.57 179.06 1.53 23.09 16 14 O -0.63 -24.06 16.34 -3.99 -0.07 -24.12 16 15 N -0.72 -23.07 5.53 -482.31 -2.67 -25.74 16 16 C 0.14 5.12 6.15 85.64 0.53 5.65 16 17 C 0.43 19.75 7.85 87.66 0.69 20.44 16 18 O -0.62 -31.57 15.24 -3.06 -0.05 -31.62 16 19 N -0.56 -27.89 5.29 -306.98 -1.62 -29.51 16 20 C -0.34 -18.29 9.68 84.04 0.81 -17.48 16 21 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 22 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 23 N -0.92 -48.48 13.05 21.66 0.28 -48.19 16 24 Si 1.00 41.45 29.55 68.60 2.03 43.48 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 28 H 0.12 1.23 8.04 -2.91 -0.02 1.21 16 29 H 0.10 1.30 7.86 -2.91 -0.02 1.28 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.72 8.06 -2.39 -0.02 0.70 16 32 H 0.07 0.75 7.39 -2.39 -0.02 0.73 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.04 7.47 -2.38 -0.02 1.03 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.41 6.52 8.28 -92.71 -0.77 5.75 16 40 H 0.41 12.59 7.45 -92.71 -0.69 11.90 16 41 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 43 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 44 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -68.13 371.09 -0.49 -68.62 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -1.15 Total: 43.03 kcal Atomic # 6 Polarization: 23.61 SS G_CDS: 6.84 Total: 30.46 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -6.45 Total: -121.27 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -1.75 Total: -64.30 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -68.13 -0.49 -68.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346227006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.515 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds