Wall clock time and date at job start Fri Apr 10 2020 18:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45195 * 109.47380 * 2 1 4 4 C 1.34230 * 117.00126 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00303 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99708 * 180.02562 * 4 3 2 7 7 C 1.52997 * 112.84874 * 300.49594 * 6 4 3 8 8 C 1.50700 * 109.47051 * 293.98122 * 7 6 4 9 9 O 1.21281 * 119.99969 * 354.82766 * 8 7 6 10 10 N 1.34776 * 120.00048 * 174.82618 * 8 7 6 11 11 C 1.47583 * 134.49504 * 179.97438 * 10 8 7 12 12 C 1.53949 * 86.11470 * 155.36186 * 11 10 8 13 13 O 1.42904 * 113.73920 * 269.15413 * 12 11 10 14 14 C 1.50696 * 113.73783 * 137.95827 * 12 11 10 15 15 H 1.07998 * 120.00385 * 1.91884 * 14 12 11 16 16 C 1.37879 * 119.99689 * 182.19774 * 14 12 11 17 17 N 1.31515 * 120.00256 * 359.72247 * 16 14 12 18 18 Si 1.86798 * 120.00272 * 179.72297 * 16 14 12 19 19 H 1.48498 * 109.47105 * 59.99720 * 18 16 14 20 20 H 1.48495 * 109.47551 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47057 * 299.99965 * 18 16 14 22 22 C 1.47813 * 134.45524 * 359.87189 * 10 8 7 23 23 C 1.53777 * 113.69087 * 71.76514 * 6 4 3 24 24 C 1.53780 * 87.08493 * 89.12388 * 23 6 4 25 25 C 1.53785 * 87.08089 * 25.43098 * 24 23 6 26 26 H 1.09007 * 109.47675 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47364 * 299.99948 * 1 2 3 28 28 H 1.08997 * 109.47579 * 59.99799 * 1 2 3 29 29 H 1.09003 * 109.46728 * 240.00321 * 2 1 3 30 30 H 1.08995 * 109.47414 * 120.00710 * 2 1 3 31 31 H 1.09000 * 109.46931 * 173.98569 * 7 6 4 32 32 H 1.08994 * 109.47541 * 53.98529 * 7 6 4 33 33 H 1.08997 * 113.76668 * 41.06062 * 11 10 8 34 34 H 1.08998 * 113.86872 * 269.67205 * 11 10 8 35 35 H 0.96693 * 113.99866 * 178.07831 * 13 12 11 36 36 H 0.96997 * 120.00660 * 180.02562 * 17 16 14 37 37 H 1.08996 * 113.77093 * 90.37678 * 22 10 8 38 38 H 1.09007 * 113.83292 * 318.91380 * 22 10 8 39 39 H 1.08998 * 113.62039 * 203.67273 * 23 6 4 40 40 H 1.09000 * 113.61809 * 334.57580 * 23 6 4 41 41 H 1.09007 * 113.61806 * 270.88449 * 24 23 6 42 42 H 1.09000 * 113.69564 * 139.99176 * 24 23 6 43 43 H 1.08996 * 113.61734 * 220.02095 * 25 24 23 44 44 H 1.08994 * 113.68854 * 89.12446 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.4860 3.7606 -1.2142 8 6 4.0680 3.1555 -2.4657 9 8 4.8371 2.2212 -2.3865 10 7 3.7338 3.6528 -3.6729 11 6 4.0978 3.3224 -5.0645 12 6 2.7561 3.9667 -5.4578 13 8 1.6660 3.0437 -5.5030 14 6 2.8383 4.8391 -6.6838 15 1 3.7736 4.9376 -7.2148 16 6 1.7209 5.5160 -7.1244 17 7 0.5819 5.3961 -6.4779 18 14 1.8246 6.6036 -8.6396 19 1 2.2326 5.7849 -9.8095 20 1 0.4972 7.2154 -8.9017 21 1 2.8269 7.6755 -8.4119 22 6 2.8537 4.7471 -4.1343 23 6 3.7503 3.6760 1.3380 24 6 5.0960 3.0620 1.7584 25 6 5.4357 2.9772 0.2610 26 1 -0.3635 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8433 4.7846 -1.1056 32 1 2.3982 3.7606 -1.2826 33 1 4.1462 2.2519 -5.2636 34 1 4.9695 3.8634 -5.4326 35 1 0.8159 3.4495 -5.7210 36 1 -0.2043 5.8721 -6.7880 37 1 3.3594 5.7081 -4.2272 38 1 1.9104 4.8120 -3.5919 39 1 3.7761 4.7616 1.2440 40 1 2.9052 3.3213 1.9281 41 1 5.0005 2.0888 2.2402 42 1 5.7362 3.7479 2.3133 43 1 5.9512 2.0584 -0.0185 44 1 5.9225 3.8711 -0.1289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356557493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:32 Heat of formation + Delta-G solvation = -138.157194 kcal Electronic energy + Delta-G solvation = -27124.326696 eV Core-core repulsion = 23236.041546 eV Total energy + Delta-G solvation = -3888.285150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -42.30945 -41.03640 -39.70065 -38.62006 -37.46654 -35.79162 -34.14746 -32.81370 -32.09195 -30.00667 -27.42651 -26.98663 -26.67505 -25.87408 -24.05661 -22.89191 -21.76579 -20.39716 -19.94503 -19.21897 -18.37257 -17.98172 -17.64358 -17.54395 -17.11917 -16.59250 -16.29965 -16.02130 -15.73815 -15.37681 -15.11322 -14.82291 -14.39840 -14.24460 -14.02272 -13.83689 -13.74029 -13.40728 -13.34821 -13.18130 -12.97931 -12.88395 -12.75357 -12.63383 -12.55406 -12.24263 -12.21012 -11.96730 -11.60355 -11.59058 -11.47426 -11.29308 -11.22616 -10.85271 -10.60639 -10.22297 -9.55465 -8.25280 -6.42386 1.11902 1.48884 1.51322 1.57888 1.59131 1.65698 1.94515 2.41935 2.97195 3.20448 3.41659 3.54155 3.65938 3.74195 3.84876 3.91143 3.99713 4.02473 4.19364 4.24439 4.33120 4.45265 4.47805 4.57268 4.60405 4.75447 4.79934 4.82810 4.83436 4.86384 4.92308 4.96984 5.02898 5.07893 5.11109 5.16240 5.25474 5.35341 5.47217 5.73305 5.94327 6.62596 6.70370 6.87331 7.16094 7.31211 7.44810 8.80597 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.003748 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.705659 B = 7469.156698 C = 8207.507057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.484 3.516 5 O -0.529 6.529 6 C -0.076 4.076 7 C -0.109 4.109 8 C 0.511 3.489 9 O -0.587 6.587 10 N -0.636 5.636 11 C 0.109 3.891 12 C 0.218 3.782 13 O -0.588 6.588 14 C -0.559 4.559 15 H 0.070 0.930 16 C 0.037 3.963 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.096 3.904 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.111 4.111 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.388 0.612 36 H 0.276 0.724 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 1.232 15.671 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.328 3.672 5 O -0.418 6.418 6 C -0.077 4.077 7 C -0.149 4.149 8 C 0.303 3.697 9 O -0.468 6.468 10 N -0.370 5.370 11 C -0.013 4.013 12 C 0.177 3.823 13 O -0.400 6.400 14 C -0.597 4.597 15 H 0.088 0.912 16 C -0.164 4.164 17 N -0.554 5.554 18 Si 0.791 3.209 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.026 4.026 23 C -0.137 4.137 24 C -0.174 4.174 25 C -0.149 4.149 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.984 -0.020 16.067 16.097 hybrid contribution -0.387 0.135 -1.475 1.531 sum 0.597 0.115 14.593 14.605 Atomic orbital electron populations 1.21811 0.89905 1.04502 1.03786 1.23255 0.97479 0.79452 1.01871 1.86481 1.24020 1.33481 1.83811 1.23410 0.80468 0.92391 0.70926 1.90592 1.61223 1.43955 1.45999 1.21592 0.99113 0.88611 0.98416 1.21644 1.03253 1.01522 0.88456 1.21067 0.80840 0.83231 0.84610 1.90701 1.38444 1.30687 1.86991 1.50291 1.46697 1.35221 1.04758 1.23413 0.98946 0.99798 0.79165 1.20133 0.83799 0.86126 0.92216 1.86058 1.21379 1.39231 1.93338 1.21680 0.97590 1.27836 1.12587 0.91203 1.25693 0.94592 0.96856 0.99268 1.69453 1.01275 1.43685 1.41030 0.85481 0.77528 0.78723 0.79134 1.20345 1.20696 1.19118 1.24131 0.92358 0.90987 0.95156 1.23074 0.98513 1.01899 0.90216 1.22896 0.97765 1.01454 0.95280 1.22877 0.91991 1.02855 0.97156 0.87972 0.90071 0.92267 0.93480 0.90484 0.84020 0.87703 0.93267 0.88041 0.75845 0.91413 0.88493 0.91010 0.85039 0.89743 0.91538 0.87754 0.93220 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 10.29 71.98 0.74 -2.00 16 2 C 0.05 1.41 6.19 71.98 0.45 1.86 16 3 O -0.36 -11.30 10.21 -51.42 -0.53 -11.82 16 4 C 0.48 16.68 5.63 71.24 0.40 17.09 16 5 O -0.53 -21.74 15.55 22.13 0.34 -21.40 16 6 C -0.08 -2.09 0.70 -52.40 -0.04 -2.12 16 7 C -0.11 -3.12 4.88 29.85 0.15 -2.98 16 8 C 0.51 20.41 7.70 87.66 0.68 21.09 16 9 O -0.59 -27.65 15.07 -3.03 -0.05 -27.70 16 10 N -0.64 -26.47 3.61 -839.59 -3.03 -29.50 16 11 C 0.11 4.87 8.23 86.49 0.71 5.58 16 12 C 0.22 10.37 1.40 -10.88 -0.02 10.35 16 13 O -0.59 -30.61 13.49 -148.98 -2.01 -32.62 16 14 C -0.56 -27.47 8.61 25.60 0.22 -27.25 16 15 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 16 C 0.04 1.77 5.40 84.66 0.46 2.23 16 17 N -0.91 -44.82 11.21 21.45 0.24 -44.57 16 18 Si 0.97 38.49 29.54 68.60 2.03 40.51 16 19 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 22 C 0.10 3.90 8.02 86.45 0.69 4.60 16 23 C -0.10 -1.74 7.22 31.12 0.22 -1.52 16 24 C -0.14 -2.63 7.81 31.12 0.24 -2.38 16 25 C -0.11 -2.98 5.82 31.12 0.18 -2.80 16 26 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.44 8.13 -2.39 -0.02 1.43 16 30 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 31 H 0.14 2.97 8.05 -2.39 -0.02 2.95 16 32 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.10 4.10 8.09 -2.39 -0.02 4.08 16 35 H 0.39 20.17 6.61 -74.06 -0.49 19.68 16 36 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 37 H 0.10 3.65 8.09 -2.39 -0.02 3.63 16 38 H 0.07 2.86 8.14 -2.38 -0.02 2.85 16 39 H 0.13 1.48 8.04 -2.39 -0.02 1.46 16 40 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 41 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.73 7.25 -2.39 -0.02 1.71 16 44 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 Total: -1.00 -67.48 367.72 2.60 -64.88 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: 0.51 Total: 40.48 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 5.09 Total: 21.74 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.79 Total: -74.08 kcal Atomic # 8 Polarization: -91.30 SS G_CDS: -2.24 Total: -93.54 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Total: -67.48 2.60 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356557493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.275 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds