Wall clock time and date at job start Fri Apr 10 2020 18:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00075 * 2 1 4 4 O 1.20831 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00274 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.43235 * 302.54941 * 5 3 2 7 7 C 1.54810 * 110.48513 * 65.23308 * 5 3 2 8 8 C 1.54991 * 102.09096 * 139.55795 * 7 5 3 9 9 O 1.44378 * 103.49101 * 322.97574 * 8 7 5 10 10 C 1.43742 * 106.97608 * 40.05943 * 9 8 7 11 11 H 1.08997 * 109.88208 * 214.05962 * 10 9 8 12 12 C 1.53008 * 109.87720 * 92.90875 * 10 9 8 13 13 C 1.53042 * 109.45886 * 182.19565 * 12 10 9 14 14 C 1.53189 * 109.31163 * 178.60175 * 13 12 10 15 15 N 1.46927 * 108.76420 * 54.65835 * 14 13 12 16 16 C 1.34776 * 120.62873 * 126.36419 * 15 14 13 17 17 O 1.21696 * 119.99546 * 174.77060 * 16 15 14 18 18 C 1.46373 * 120.00267 * 354.76543 * 16 15 14 19 19 H 1.07995 * 119.99415 * 5.60929 * 18 16 15 20 20 C 1.40044 * 119.99996 * 185.60146 * 18 16 15 21 21 N 1.30675 * 120.00211 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99995 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46873 * 60.00321 * 22 20 18 24 24 H 1.48498 * 109.47423 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47403 * 300.00639 * 22 20 18 26 26 C 1.46929 * 118.73675 * 306.37926 * 15 14 13 27 27 C 1.53040 * 109.45667 * 62.14424 * 12 10 9 28 28 H 1.09004 * 109.47535 * 299.99930 * 1 2 3 29 29 H 1.08993 * 109.47220 * 60.00189 * 1 2 3 30 30 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.90835 * 257.75625 * 7 5 3 32 32 H 1.09001 * 110.90525 * 21.32650 * 7 5 3 33 33 H 1.08998 * 110.61993 * 81.47774 * 8 7 5 34 34 H 1.08999 * 110.61992 * 204.47758 * 8 7 5 35 35 H 1.08997 * 109.45876 * 302.17145 * 12 10 9 36 36 H 1.08995 * 109.50281 * 298.56830 * 13 12 10 37 37 H 1.09005 * 109.49453 * 58.66834 * 13 12 10 38 38 H 1.09004 * 109.59724 * 294.87215 * 14 13 12 39 39 H 1.08997 * 109.70456 * 174.51099 * 14 13 12 40 40 H 0.96997 * 119.99870 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.59139 * 293.82130 * 26 15 14 42 42 H 1.09006 * 109.69856 * 173.46355 * 26 15 14 43 43 H 1.08993 * 109.49817 * 301.33709 * 27 12 10 44 44 H 1.08999 * 109.50004 * 61.40103 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9748 0.7462 0.8618 7 6 4.1397 0.6963 -1.3159 8 6 5.2834 1.6919 -1.6371 9 8 4.7453 2.9670 -1.2260 10 6 4.0293 2.7447 0.0004 11 1 3.1642 3.4059 0.0497 12 6 4.9513 2.9997 1.1946 13 6 4.1961 2.7076 2.4933 14 6 5.1325 2.9303 3.6850 15 7 5.6876 4.2882 3.6025 16 6 5.5856 5.1362 4.6450 17 8 6.1312 6.2231 4.6008 18 6 4.8185 4.7500 5.8303 19 1 4.4106 3.7531 5.9082 20 6 4.6137 5.6732 6.8633 21 7 5.1070 6.8796 6.7688 22 14 3.6342 5.1805 8.3756 23 1 4.3006 4.0348 9.0454 24 1 3.5615 6.3290 9.3142 25 1 2.2614 4.7862 7.9695 26 6 6.3558 4.7040 2.3617 27 6 5.4057 4.4611 1.1848 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.5313 -0.3091 -1.1609 32 1 3.3863 0.7013 -2.1036 33 1 6.1767 1.4488 -1.0619 34 1 5.5019 1.6939 -2.7049 35 1 5.8223 2.3481 1.1266 36 1 3.3389 3.3760 2.5740 37 1 3.8523 1.6732 2.4894 38 1 5.9428 2.2018 3.6544 39 1 4.5760 2.8190 4.6155 40 1 4.9648 7.5190 7.4841 41 1 7.2658 4.1202 2.2233 42 1 6.6061 5.7635 2.4165 43 1 5.9229 4.6750 0.2496 44 1 4.5370 5.1129 1.2774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358616966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:54 Heat of formation + Delta-G solvation = -169.169416 kcal Electronic energy + Delta-G solvation = -27085.476472 eV Core-core repulsion = 23195.846531 eV Total energy + Delta-G solvation = -3889.629941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.161 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -41.21527 -39.60806 -38.15204 -36.67519 -35.72289 -32.96653 -32.55150 -32.11777 -30.49527 -28.96756 -27.90602 -26.41774 -24.89896 -23.04605 -22.50745 -21.94639 -20.59475 -20.03745 -18.94733 -17.92233 -17.15076 -16.85396 -16.56767 -16.06001 -15.86921 -15.51446 -14.72679 -14.36821 -14.20354 -14.07486 -13.81286 -13.50477 -13.44947 -13.27250 -12.86796 -12.55686 -12.36421 -12.24095 -11.97471 -11.74033 -11.64394 -11.37222 -11.25403 -11.14534 -11.06696 -10.98901 -10.83611 -10.66395 -10.59438 -10.49393 -10.22128 -9.97847 -9.75630 -9.49979 -8.82839 -7.54376 -7.16949 -6.17171 -4.62038 1.95378 2.38994 3.16241 3.21235 3.22749 3.67158 4.10444 4.11402 4.36096 4.46023 4.59112 4.63356 4.81341 4.83715 4.84516 4.92255 4.96966 5.12384 5.19086 5.25941 5.27323 5.44205 5.45577 5.61781 5.68960 5.73894 5.76300 5.92965 5.97710 6.04801 6.11390 6.20630 6.38611 6.42719 6.51676 6.59394 6.66566 6.77286 6.87903 7.47621 7.48691 7.67692 8.16898 8.39279 9.04378 9.47927 10.60785 10.79464 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003852 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.493739 B = 7267.154688 C = 8564.432551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.495 6.495 5 C -0.117 4.117 6 H 0.127 0.873 7 C -0.141 4.141 8 C 0.044 3.956 9 O -0.360 6.360 10 C 0.089 3.911 11 H 0.117 0.883 12 C -0.097 4.097 13 C -0.132 4.132 14 C 0.125 3.875 15 N -0.642 5.642 16 C 0.560 3.440 17 O -0.578 6.578 18 C -0.546 4.546 19 H 0.072 0.928 20 C 0.088 3.912 21 N -0.769 5.769 22 Si 0.905 3.095 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.268 1.268 26 C 0.122 3.878 27 C -0.120 4.120 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.094 0.906 40 H 0.269 0.731 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 -17.136 -15.198 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.382 6.382 5 C -0.136 4.136 6 H 0.145 0.855 7 C -0.178 4.178 8 C -0.033 4.033 9 O -0.279 6.279 10 C 0.031 3.969 11 H 0.134 0.866 12 C -0.116 4.116 13 C -0.170 4.170 14 C 0.000 4.000 15 N -0.380 5.380 16 C 0.366 3.634 17 O -0.461 6.461 18 C -0.582 4.582 19 H 0.090 0.910 20 C -0.131 4.131 21 N -0.397 5.397 22 Si 0.730 3.270 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.193 1.193 26 C -0.003 4.003 27 C -0.158 4.158 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.911 -15.813 -15.228 22.496 hybrid contribution -0.868 -0.639 0.826 1.358 sum -5.779 -16.452 -14.402 22.616 Atomic orbital electron populations 1.23299 0.76155 1.03720 1.02797 1.86493 1.23556 1.33244 1.84169 1.23398 0.91616 0.81455 0.72246 1.90694 1.66758 1.36191 1.44519 1.22588 0.88294 1.00435 1.02327 0.85520 1.23122 0.98960 1.00593 0.95155 1.23583 0.95577 0.83020 1.01106 1.88979 1.70563 1.28972 1.39371 1.23002 0.95680 0.92963 0.85275 0.86570 1.21566 0.97905 0.98736 0.93376 1.22042 0.99627 1.00494 0.94865 1.21368 0.95373 0.85071 0.98197 1.48167 1.61538 1.13704 1.14609 1.18228 0.80478 0.82857 0.81856 1.90590 1.50753 1.23295 1.81462 1.20939 1.35612 0.99551 1.02122 0.91016 1.25716 0.94371 0.94294 0.98766 1.70004 1.34833 1.03892 1.30994 0.86476 0.80558 0.78750 0.81236 1.19255 1.20545 1.19301 1.21114 0.93390 1.01326 0.84427 1.21857 1.00508 0.94668 0.98781 0.91592 0.91900 0.88034 0.88814 0.90158 0.91506 0.88623 0.91072 0.91155 0.92412 0.94180 0.88801 0.92061 0.94295 0.89858 0.91297 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.67 10.57 -39.26 -0.41 -4.09 16 3 C 0.47 5.67 7.14 36.01 0.26 5.93 16 4 O -0.50 -7.52 15.01 -18.75 -0.28 -7.80 16 5 C -0.12 -1.22 2.64 -90.24 -0.24 -1.45 16 6 H 0.13 1.15 6.30 -51.93 -0.33 0.82 16 7 C -0.14 -1.11 6.70 -24.73 -0.17 -1.28 16 8 C 0.04 0.39 7.66 38.21 0.29 0.68 16 9 O -0.36 -4.66 10.61 -35.23 -0.37 -5.03 16 10 C 0.09 1.15 2.63 -26.15 -0.07 1.08 16 11 H 0.12 1.80 6.44 -51.93 -0.33 1.46 16 12 C -0.10 -1.37 1.77 -90.57 -0.16 -1.53 16 13 C -0.13 -2.01 5.12 -26.61 -0.14 -2.15 16 14 C 0.12 2.30 6.35 -3.71 -0.02 2.27 16 15 N -0.64 -14.77 2.97 -174.42 -0.52 -15.29 16 16 C 0.56 16.16 7.61 -12.99 -0.10 16.07 16 17 O -0.58 -19.02 14.48 5.19 0.08 -18.94 16 18 C -0.55 -15.39 8.88 -35.63 -0.32 -15.70 16 19 H 0.07 1.83 5.64 -52.49 -0.30 1.53 16 20 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 21 N -0.77 -23.26 11.84 55.55 0.66 -22.60 16 22 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 26 C 0.12 2.45 6.41 -3.71 -0.02 2.42 16 27 C -0.12 -2.01 5.25 -26.61 -0.14 -2.15 16 28 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 33 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.72 6.40 -51.93 -0.33 0.38 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.83 5.30 -51.93 -0.28 1.56 16 40 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.90 7.04 -51.93 -0.37 1.53 16 43 H 0.07 1.06 7.72 -51.93 -0.40 0.66 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -36.41 351.07 -6.96 -43.37 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.52 Total: 2.03 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 0.15 Total: 7.90 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.14 Total: -37.89 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.99 Total: -35.86 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.41 -6.96 -43.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358616966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.801 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds