Wall clock time and date at job start Fri Apr 10 2020 18:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00267 * 2 1 4 4 O 1.21281 * 120.00104 * 184.72419 * 3 2 1 5 5 C 1.50696 * 119.99776 * 4.44134 * 3 2 1 6 6 H 1.09003 * 109.50498 * 315.51976 * 5 3 2 7 7 C 1.53094 * 109.50883 * 75.65164 * 5 3 2 8 8 N 1.47006 * 109.26417 * 176.78371 * 7 5 3 9 9 C 1.46897 * 111.00598 * 177.60927 * 8 7 5 10 10 C 1.47019 * 110.75242 * 301.38567 * 8 7 5 11 11 C 1.53104 * 109.25634 * 58.61012 * 10 8 7 12 12 O 1.43013 * 109.26000 * 303.15402 * 11 10 8 13 13 C 1.46505 * 119.99958 * 179.97438 * 2 1 3 14 14 C 1.53038 * 109.45730 * 60.07192 * 13 2 1 15 15 C 1.53191 * 109.31326 * 178.61518 * 14 13 2 16 16 N 1.46919 * 108.77779 * 54.63063 * 15 14 13 17 17 C 1.36942 * 120.63103 * 126.36804 * 16 15 14 18 18 H 1.08001 * 119.99993 * 205.62825 * 17 16 15 19 19 C 1.38813 * 119.99778 * 25.63118 * 17 16 15 20 20 N 1.31619 * 120.00067 * 31.09555 * 19 17 16 21 21 Si 1.86803 * 119.99976 * 211.09942 * 19 17 16 22 22 H 1.48492 * 109.47346 * 94.98422 * 21 19 17 23 23 H 1.48502 * 109.46787 * 214.98846 * 21 19 17 24 24 H 1.48500 * 109.46673 * 334.98500 * 21 19 17 25 25 C 1.46925 * 118.74022 * 306.39602 * 16 15 14 26 26 C 1.53033 * 109.46136 * 300.00199 * 13 2 1 27 27 H 1.08997 * 109.46874 * 95.29528 * 1 2 3 28 28 H 1.08999 * 109.47273 * 215.29667 * 1 2 3 29 29 H 1.09006 * 109.46866 * 335.30064 * 1 2 3 30 30 H 1.09006 * 109.50436 * 296.72267 * 7 5 3 31 31 H 1.09000 * 109.50902 * 56.84440 * 7 5 3 32 32 H 1.08998 * 109.47151 * 187.59152 * 9 8 7 33 33 H 1.09006 * 109.46585 * 307.58759 * 9 8 7 34 34 H 1.08997 * 109.47048 * 67.58486 * 9 8 7 35 35 H 1.08997 * 109.50574 * 298.68072 * 10 8 7 36 36 H 1.08993 * 109.50566 * 178.54532 * 10 8 7 37 37 H 1.08996 * 109.50434 * 183.21917 * 11 10 8 38 38 H 1.09005 * 109.53675 * 63.11270 * 11 10 8 39 39 H 1.09000 * 109.45826 * 180.02562 * 13 2 1 40 40 H 1.09002 * 109.49625 * 298.56748 * 14 13 2 41 41 H 1.08997 * 109.49987 * 58.65993 * 14 13 2 42 42 H 1.09008 * 109.58378 * 294.84616 * 15 14 13 43 43 H 1.08999 * 109.58596 * 174.42694 * 15 14 13 44 44 H 0.97005 * 119.99785 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.58774 * 293.81854 * 25 16 15 46 46 H 1.09002 * 109.58634 * 173.38998 * 25 16 15 47 47 H 1.09000 * 109.49982 * 301.33561 * 26 13 2 48 48 H 1.09006 * 109.49812 * 61.40435 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3487 1.1690 -0.0865 5 6 1.3889 2.4703 0.1011 6 1 0.5255 2.4458 -0.5639 7 6 0.9189 2.6792 1.5430 8 7 0.2556 3.9866 1.6524 9 6 -0.2617 4.2027 3.0102 10 6 1.1692 5.0689 1.2582 11 6 1.6367 4.8360 -0.1810 12 8 2.2508 3.5479 -0.2749 13 6 2.1975 -1.2688 0.0006 14 6 1.8289 -2.0708 -1.2496 15 6 2.6225 -3.3810 -1.2633 16 7 2.3849 -4.0910 0.0009 17 6 1.9510 -5.3898 0.0008 18 1 1.3959 -5.7738 0.8439 19 6 2.2246 -6.2129 -1.0830 20 7 3.3258 -6.0365 -1.7819 21 14 1.0297 -7.5709 -1.5496 22 1 0.1102 -7.0794 -2.6069 23 1 1.7867 -8.7432 -2.0575 24 1 0.2426 -7.9696 -0.3552 25 6 2.6212 -3.3808 1.2652 26 6 1.8276 -2.0705 1.2505 27 1 -0.3633 -0.0948 -1.0233 28 1 -0.3634 -0.8387 0.5938 29 1 -0.3633 0.9337 0.4294 30 1 0.2168 1.8909 1.8148 31 1 1.7777 2.6496 2.2137 32 1 -0.8622 5.1121 3.0298 33 1 -0.8789 3.3533 3.3033 34 1 0.5722 4.3027 3.7050 35 1 2.0320 5.0775 1.9242 36 1 0.6497 6.0249 1.3220 37 1 2.3584 5.6044 -0.4580 38 1 0.7805 4.8811 -0.8541 39 1 3.2691 -1.0694 0.0009 40 1 0.7616 -2.2919 -1.2384 41 1 2.0711 -1.4895 -2.1393 42 1 3.6856 -3.1632 -1.3658 43 1 2.2920 -3.9997 -2.0976 44 1 3.5168 -6.6114 -2.5395 45 1 3.6842 -3.1630 1.3689 46 1 2.2897 -3.9994 2.0992 47 1 2.0688 -1.4891 2.1403 48 1 0.7602 -2.2913 1.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005208769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:17 Heat of formation + Delta-G solvation = -36.495434 kcal Electronic energy + Delta-G solvation = -27439.066404 eV Core-core repulsion = 23723.315484 eV Total energy + Delta-G solvation = -3715.750919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66521 -39.14179 -37.35109 -36.00601 -35.12089 -32.79333 -31.62896 -30.20953 -29.72381 -28.97575 -26.95188 -25.77483 -24.51367 -24.47801 -22.27210 -22.07677 -20.90594 -19.51742 -18.88760 -17.40004 -16.97947 -16.62241 -16.36224 -15.83253 -15.54174 -15.32194 -14.81364 -14.74665 -14.41947 -14.09501 -13.80563 -13.65094 -13.29976 -13.04715 -13.01989 -12.79990 -12.63208 -12.52187 -12.33497 -12.12277 -11.89833 -11.72536 -11.47033 -11.32189 -11.07721 -10.77889 -10.73156 -10.40411 -10.23149 -10.13007 -9.98755 -9.76012 -9.65933 -9.42603 -8.87704 -8.48514 -8.32513 -6.79090 -5.85274 -3.15544 2.55822 2.76117 3.38171 3.40488 3.47248 3.48203 3.76565 4.37486 4.47556 4.50744 4.53487 4.69154 4.80423 4.91651 4.98970 5.09539 5.10930 5.19380 5.24756 5.32507 5.36593 5.37447 5.42850 5.45259 5.48769 5.54854 5.61505 5.72638 5.83942 6.03238 6.20757 6.27550 6.41642 6.43544 6.45929 6.53694 6.58754 6.71947 6.74599 6.91693 6.93563 7.22828 7.43550 7.54526 7.83032 8.26129 8.38168 9.15283 9.82844 10.40293 11.23140 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.002959 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.172291 B = 9459.892451 C = 9747.557184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.605 5.605 3 C 0.518 3.482 4 O -0.519 6.519 5 C 0.079 3.921 6 H 0.090 0.910 7 C 0.027 3.973 8 N -0.540 5.540 9 C 0.024 3.976 10 C 0.014 3.986 11 C 0.062 3.938 12 O -0.356 6.356 13 C 0.147 3.853 14 C -0.143 4.143 15 C 0.174 3.826 16 N -0.590 5.590 17 C -0.264 4.264 18 H 0.068 0.932 19 C 0.010 3.990 20 N -0.884 5.884 21 Si 0.887 3.113 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.148 3.852 26 C -0.138 4.138 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.022 0.978 43 H 0.078 0.922 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 21.920 6.385 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.303 3.697 4 O -0.394 6.394 5 C 0.017 3.983 6 H 0.107 0.893 7 C -0.101 4.101 8 N -0.265 5.265 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.015 4.015 12 O -0.274 6.274 13 C 0.045 3.955 14 C -0.184 4.184 15 C 0.048 3.952 16 N -0.313 5.313 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.191 4.191 20 N -0.526 5.526 21 Si 0.717 3.283 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.203 1.203 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.724 21.787 5.832 24.182 hybrid contribution -0.349 -0.591 0.311 0.753 sum -9.073 21.196 6.143 23.861 Atomic orbital electron populations 1.21942 0.80006 1.03094 1.02513 1.48076 1.06956 1.05947 1.72913 1.20001 0.87912 0.84462 0.77281 1.90718 1.13870 1.86761 1.48041 1.21977 0.93064 0.87160 0.96061 0.89273 1.22731 0.98820 0.92527 0.96028 1.62236 1.36390 1.01773 1.26127 1.22400 0.99445 1.02854 0.87684 1.22866 0.95467 0.95390 0.97695 1.22747 0.98531 0.85307 0.94939 1.88139 1.38010 1.13671 1.87569 1.21203 0.97313 0.80603 0.96366 1.22506 1.01651 0.98612 0.95586 1.20668 0.95550 0.89002 0.90022 1.44147 1.77808 1.10039 0.99304 1.19100 1.28073 0.87130 1.05003 0.91477 1.24876 0.96095 0.97208 1.00898 1.70252 1.20844 1.40452 1.21075 0.86503 0.81721 0.81410 0.78690 1.21454 1.21955 1.20295 1.20852 0.95829 0.90871 0.90343 1.22383 1.01490 0.98057 0.95887 0.92230 0.90340 0.91060 0.88591 0.93051 0.90887 0.90926 0.95239 0.93559 0.89301 0.87826 0.92004 0.88635 0.92189 0.92904 0.95961 0.90340 0.93607 0.96205 0.92341 0.92941 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.10 59.85 0.54 1.27 16 2 N -0.60 -8.85 2.76 -173.89 -0.48 -9.33 16 3 C 0.52 8.24 6.97 -10.98 -0.08 8.16 16 4 O -0.52 -10.61 15.91 -13.85 -0.22 -10.83 16 5 C 0.08 0.98 2.36 -27.84 -0.07 0.91 16 6 H 0.09 0.96 7.19 -51.93 -0.37 0.59 16 7 C 0.03 0.28 4.63 -3.72 -0.02 0.26 16 8 N -0.54 -4.71 4.99 -242.60 -1.21 -5.92 16 9 C 0.02 0.16 9.63 60.06 0.58 0.74 16 10 C 0.01 0.11 5.66 -3.71 -0.02 0.09 16 11 C 0.06 0.56 7.01 37.21 0.26 0.82 16 12 O -0.36 -4.87 10.05 -54.64 -0.55 -5.42 16 13 C 0.15 2.59 2.48 -67.89 -0.17 2.42 16 14 C -0.14 -2.73 5.34 -26.61 -0.14 -2.87 16 15 C 0.17 4.12 5.46 -3.72 -0.02 4.10 16 16 N -0.59 -14.58 3.00 -172.32 -0.52 -15.10 16 17 C -0.26 -7.17 9.49 -15.06 -0.14 -7.31 16 18 H 0.07 1.80 7.98 -52.49 -0.42 1.38 16 19 C 0.01 0.27 4.51 -17.43 -0.08 0.19 16 20 N -0.88 -25.77 12.01 55.49 0.67 -25.10 16 21 Si 0.89 21.34 29.65 -169.99 -5.04 16.29 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 26 C -0.14 -2.35 5.29 -26.61 -0.14 -2.49 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.83 6.48 -51.93 -0.34 0.50 16 29 H 0.07 0.60 4.50 -51.93 -0.23 0.36 16 30 H 0.10 0.85 6.28 -51.93 -0.33 0.53 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 1.94 6.91 -51.93 -0.36 1.58 16 40 H 0.06 1.11 7.72 -51.93 -0.40 0.70 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.08 2.05 6.34 -51.93 -0.33 1.72 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.18 7.92 -51.93 -0.41 0.77 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 1.03 6.76 -51.93 -0.35 0.68 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -33.08 366.31 -9.51 -42.58 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.17 Total: -2.05 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 0.49 Total: 9.35 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -1.54 Total: -55.45 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.77 Total: -16.25 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.04 Total: 16.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.08 -9.51 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005208769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.089 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds