Wall clock time and date at job start Fri Apr 10 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 120.00267 * 2 1 4 4 O 1.21281 * 120.00104 * 184.72419 * 3 2 1 5 5 C 1.50696 * 119.99776 * 4.44134 * 3 2 1 6 6 H 1.09003 * 109.50498 * 315.51976 * 5 3 2 7 7 C 1.53094 * 109.50883 * 75.65164 * 5 3 2 8 8 N 1.47006 * 109.26417 * 176.78371 * 7 5 3 9 9 C 1.46897 * 111.00598 * 177.60927 * 8 7 5 10 10 C 1.47019 * 110.75242 * 301.38567 * 8 7 5 11 11 C 1.53104 * 109.25634 * 58.61012 * 10 8 7 12 12 O 1.43013 * 109.26000 * 303.15402 * 11 10 8 13 13 C 1.46505 * 119.99958 * 179.97438 * 2 1 3 14 14 C 1.53038 * 109.45730 * 60.07192 * 13 2 1 15 15 C 1.53191 * 109.31326 * 178.61518 * 14 13 2 16 16 N 1.46919 * 108.77779 * 54.63063 * 15 14 13 17 17 C 1.36942 * 120.63103 * 126.36804 * 16 15 14 18 18 H 1.08001 * 119.99993 * 205.62825 * 17 16 15 19 19 C 1.38813 * 119.99778 * 25.63118 * 17 16 15 20 20 N 1.31619 * 120.00067 * 31.09555 * 19 17 16 21 21 Si 1.86803 * 119.99976 * 211.09942 * 19 17 16 22 22 H 1.48492 * 109.47346 * 94.98422 * 21 19 17 23 23 H 1.48502 * 109.46787 * 214.98846 * 21 19 17 24 24 H 1.48500 * 109.46673 * 334.98500 * 21 19 17 25 25 C 1.46925 * 118.74022 * 306.39602 * 16 15 14 26 26 C 1.53033 * 109.46136 * 300.00199 * 13 2 1 27 27 H 1.08997 * 109.46874 * 95.29528 * 1 2 3 28 28 H 1.08999 * 109.47273 * 215.29667 * 1 2 3 29 29 H 1.09006 * 109.46866 * 335.30064 * 1 2 3 30 30 H 1.09006 * 109.50436 * 296.72267 * 7 5 3 31 31 H 1.09000 * 109.50902 * 56.84440 * 7 5 3 32 32 H 1.08998 * 109.47151 * 187.59152 * 9 8 7 33 33 H 1.09006 * 109.46585 * 307.58759 * 9 8 7 34 34 H 1.08997 * 109.47048 * 67.58486 * 9 8 7 35 35 H 1.08997 * 109.50574 * 298.68072 * 10 8 7 36 36 H 1.08993 * 109.50566 * 178.54532 * 10 8 7 37 37 H 1.08996 * 109.50434 * 183.21917 * 11 10 8 38 38 H 1.09005 * 109.53675 * 63.11270 * 11 10 8 39 39 H 1.09000 * 109.45826 * 180.02562 * 13 2 1 40 40 H 1.09002 * 109.49625 * 298.56748 * 14 13 2 41 41 H 1.08997 * 109.49987 * 58.65993 * 14 13 2 42 42 H 1.09008 * 109.58378 * 294.84616 * 15 14 13 43 43 H 1.08999 * 109.58596 * 174.42694 * 15 14 13 44 44 H 0.97005 * 119.99785 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.58774 * 293.81854 * 25 16 15 46 46 H 1.09002 * 109.58634 * 173.38998 * 25 16 15 47 47 H 1.09000 * 109.49982 * 301.33561 * 26 13 2 48 48 H 1.09006 * 109.49812 * 61.40435 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3487 1.1690 -0.0865 5 6 1.3889 2.4703 0.1011 6 1 0.5255 2.4458 -0.5639 7 6 0.9189 2.6792 1.5430 8 7 0.2556 3.9866 1.6524 9 6 -0.2617 4.2027 3.0102 10 6 1.1692 5.0689 1.2582 11 6 1.6367 4.8360 -0.1810 12 8 2.2508 3.5479 -0.2749 13 6 2.1975 -1.2688 0.0006 14 6 1.8289 -2.0708 -1.2496 15 6 2.6225 -3.3810 -1.2633 16 7 2.3849 -4.0910 0.0009 17 6 1.9510 -5.3898 0.0008 18 1 1.3959 -5.7738 0.8439 19 6 2.2246 -6.2129 -1.0830 20 7 3.3258 -6.0365 -1.7819 21 14 1.0297 -7.5709 -1.5496 22 1 0.1102 -7.0794 -2.6069 23 1 1.7867 -8.7432 -2.0575 24 1 0.2426 -7.9696 -0.3552 25 6 2.6212 -3.3808 1.2652 26 6 1.8276 -2.0705 1.2505 27 1 -0.3633 -0.0948 -1.0233 28 1 -0.3634 -0.8387 0.5938 29 1 -0.3633 0.9337 0.4294 30 1 0.2168 1.8909 1.8148 31 1 1.7777 2.6496 2.2137 32 1 -0.8622 5.1121 3.0298 33 1 -0.8789 3.3533 3.3033 34 1 0.5722 4.3027 3.7050 35 1 2.0320 5.0775 1.9242 36 1 0.6497 6.0249 1.3220 37 1 2.3584 5.6044 -0.4580 38 1 0.7805 4.8811 -0.8541 39 1 3.2691 -1.0694 0.0009 40 1 0.7616 -2.2919 -1.2384 41 1 2.0711 -1.4895 -2.1393 42 1 3.6856 -3.1632 -1.3658 43 1 2.2920 -3.9997 -2.0976 44 1 3.5168 -6.6114 -2.5395 45 1 3.6842 -3.1630 1.3689 46 1 2.2897 -3.9994 2.0992 47 1 2.0688 -1.4891 2.1403 48 1 0.7602 -2.2913 1.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005208769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:16 Heat of formation + Delta-G solvation = -59.482718 kcal Electronic energy + Delta-G solvation = -27440.063207 eV Core-core repulsion = 23723.315484 eV Total energy + Delta-G solvation = -3716.747723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.73457 -40.21140 -38.88109 -36.88936 -36.49152 -34.45981 -32.84441 -31.79155 -31.31282 -29.75819 -28.00106 -27.19108 -25.85755 -25.13671 -23.95607 -23.64765 -21.72332 -20.94598 -20.26360 -18.78216 -18.42639 -17.80448 -17.23738 -16.90146 -16.69056 -16.51115 -16.05876 -15.80359 -15.62052 -15.45931 -15.26085 -14.90365 -14.78339 -14.30361 -14.24282 -14.13106 -13.95591 -13.46234 -13.24913 -13.18299 -13.14527 -12.80999 -12.71845 -12.60433 -12.50136 -12.41998 -12.13901 -11.98760 -11.91795 -11.80469 -11.49139 -11.33023 -10.81158 -10.73752 -10.50520 -9.66655 -9.54156 -8.82408 -7.93659 -5.27443 1.38587 1.47598 1.50737 1.59936 1.65145 2.52507 2.70341 2.87702 3.18218 3.45149 3.61551 3.62402 3.85049 3.86100 3.93463 4.02167 4.10894 4.19807 4.27626 4.31521 4.42286 4.44648 4.52987 4.58011 4.62013 4.63568 4.65652 4.71269 4.78006 4.82246 4.89620 4.96712 5.01012 5.02038 5.04504 5.11559 5.25777 5.35411 5.49439 5.56775 5.69821 5.75361 5.86838 5.99077 6.32794 6.35329 7.05370 7.08888 7.81986 8.36432 9.13691 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.002959 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.172291 B = 9459.892451 C = 9747.557184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.599 5.599 3 C 0.513 3.487 4 O -0.576 6.576 5 C 0.087 3.913 6 H 0.112 0.888 7 C 0.034 3.966 8 N -0.540 5.540 9 C 0.022 3.978 10 C 0.015 3.985 11 C 0.056 3.944 12 O -0.394 6.394 13 C 0.154 3.846 14 C -0.126 4.126 15 C 0.182 3.818 16 N -0.605 5.605 17 C -0.270 4.270 18 H 0.072 0.928 19 C -0.044 4.044 20 N -0.926 5.926 21 Si 0.957 3.043 22 H -0.285 1.285 23 H -0.300 1.300 24 H -0.264 1.264 25 C 0.143 3.857 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.055 0.945 42 H -0.010 1.010 43 H 0.049 0.951 44 H 0.251 0.749 45 H 0.004 0.996 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 23.558 7.472 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.455 6.455 5 C 0.026 3.974 6 H 0.130 0.870 7 C -0.094 4.094 8 N -0.265 5.265 9 C -0.125 4.125 10 C -0.113 4.113 11 C -0.020 4.020 12 O -0.312 6.312 13 C 0.051 3.949 14 C -0.165 4.165 15 C 0.055 3.945 16 N -0.329 5.329 17 C -0.400 4.400 18 H 0.090 0.910 19 C -0.241 4.241 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.212 1.212 23 H -0.227 1.227 24 H -0.188 1.188 25 C 0.017 3.983 26 C -0.159 4.159 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.008 0.992 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.277 23.455 6.953 27.371 hybrid contribution 0.796 -1.040 0.008 1.310 sum -11.481 22.415 6.961 26.128 Atomic orbital electron populations 1.22260 0.76959 1.05125 1.03731 1.48001 1.08602 1.04439 1.72073 1.20753 0.87474 0.85860 0.75909 1.90691 1.16504 1.87615 1.50666 1.21939 0.92570 0.85000 0.97938 0.87023 1.22651 0.98540 0.94280 0.93963 1.62299 1.35842 1.01006 1.27367 1.22493 0.99492 1.04119 0.86400 1.22911 0.95345 0.96425 0.96638 1.23019 0.99349 0.83651 0.96031 1.88095 1.39729 1.15430 1.87992 1.20815 0.96029 0.82062 0.95969 1.22239 1.01443 0.96196 0.96665 1.20448 0.94304 0.90699 0.89066 1.44408 1.77922 1.09872 1.00675 1.19456 1.27373 0.88082 1.05089 0.91012 1.25670 0.97290 0.99954 1.01149 1.70373 1.22736 1.42116 1.21784 0.85421 0.79301 0.78264 0.78565 1.21151 1.22697 1.18836 1.21010 0.95705 0.92638 0.88991 1.22162 1.01660 0.95817 0.96311 0.91204 0.89475 0.88138 0.86779 0.95246 0.89208 0.90028 0.95700 0.94828 0.86619 0.86480 0.90653 0.92039 0.90641 0.92592 0.99239 0.93216 0.94044 0.97803 0.91576 0.90809 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 9.10 127.77 1.16 2.23 16 2 N -0.60 -16.52 2.76 -822.45 -2.27 -18.79 16 3 C 0.51 16.00 6.97 87.66 0.61 16.61 16 4 O -0.58 -24.31 15.91 15.52 0.25 -24.07 16 5 C 0.09 1.99 2.36 29.88 0.07 2.06 16 6 H 0.11 2.03 7.19 -2.39 -0.02 2.02 16 7 C 0.03 0.62 4.63 86.31 0.40 1.02 16 8 N -0.54 -7.72 4.99 -921.45 -4.59 -12.32 16 9 C 0.02 0.23 9.63 127.69 1.23 1.46 16 10 C 0.01 0.20 5.66 86.32 0.49 0.69 16 11 C 0.06 0.89 7.01 72.02 0.50 1.40 16 12 O -0.39 -10.44 10.05 -130.43 -1.31 -11.75 16 13 C 0.15 5.38 2.48 45.01 0.11 5.50 16 14 C -0.13 -4.76 5.34 30.67 0.16 -4.59 16 15 C 0.18 8.91 5.46 86.36 0.47 9.38 16 16 N -0.61 -30.33 3.00 -699.09 -2.09 -32.43 16 17 C -0.27 -14.72 9.49 84.03 0.80 -13.92 16 18 H 0.07 3.78 7.98 -2.91 -0.02 3.76 16 19 C -0.04 -2.44 4.51 84.86 0.38 -2.06 16 20 N -0.93 -55.75 12.01 21.65 0.26 -55.49 16 21 Si 0.96 44.22 29.65 68.60 2.03 46.26 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 25 C 0.14 5.92 6.52 86.36 0.56 6.48 16 26 C -0.12 -3.88 5.29 30.67 0.16 -3.72 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.45 6.48 -2.39 -0.02 1.44 16 29 H 0.10 1.21 4.50 -2.38 -0.01 1.20 16 30 H 0.11 1.60 6.28 -2.38 -0.01 1.58 16 31 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.69 8.08 -2.38 -0.02 0.67 16 34 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.06 2.60 6.91 -2.39 -0.02 2.58 16 40 H 0.07 2.64 7.72 -2.39 -0.02 2.62 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 43 H 0.05 2.70 6.34 -2.39 -0.02 2.68 16 44 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 45 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.07 2.61 7.92 -2.39 -0.02 2.59 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.08 2.39 6.76 -2.38 -0.02 2.37 16 Total: -1.00 -75.21 366.31 0.32 -74.88 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.93 Total: 11.16 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 7.12 Total: 22.53 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -8.70 Total: -119.02 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.06 Total: -35.82 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.21 0.32 -74.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005208769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.400 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds