Wall clock time and date at job start Fri Apr 10 2020 18:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99919 * 2 1 4 4 O 1.21284 * 119.99908 * 184.69918 * 3 2 1 5 5 C 1.50696 * 120.00021 * 4.70650 * 3 2 1 6 6 H 1.09003 * 109.50683 * 39.67945 * 5 3 2 7 7 C 1.53092 * 109.50780 * 279.54412 * 5 3 2 8 8 N 1.47011 * 109.25985 * 183.21495 * 7 5 3 9 9 C 1.46899 * 111.00154 * 182.39098 * 8 7 5 10 10 C 1.47013 * 110.74901 * 58.62479 * 8 7 5 11 11 C 1.53102 * 109.25460 * 301.37822 * 10 8 7 12 12 O 1.43010 * 109.25767 * 56.85294 * 11 10 8 13 13 C 1.46503 * 119.99742 * 180.02562 * 2 1 3 14 14 C 1.53037 * 109.46263 * 60.02409 * 13 2 1 15 15 C 1.53196 * 109.31084 * 178.60130 * 14 13 2 16 16 N 1.46921 * 108.76535 * 54.65243 * 15 14 13 17 17 C 1.36937 * 120.62688 * 126.36009 * 16 15 14 18 18 H 1.07999 * 120.00354 * 328.69055 * 17 16 15 19 19 C 1.38816 * 120.00022 * 148.68474 * 17 16 15 20 20 N 1.31623 * 119.99854 * 349.25513 * 19 17 16 21 21 Si 1.86796 * 120.00137 * 169.24598 * 19 17 16 22 22 H 1.48503 * 109.47016 * 60.00757 * 21 19 17 23 23 H 1.48503 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47338 * 300.00643 * 21 19 17 25 25 C 1.46921 * 118.74024 * 306.38509 * 16 15 14 26 26 C 1.53041 * 109.45681 * 299.96429 * 13 2 1 27 27 H 1.09003 * 109.47084 * 265.08677 * 1 2 3 28 28 H 1.08997 * 109.47445 * 25.08222 * 1 2 3 29 29 H 1.08992 * 109.47213 * 145.08772 * 1 2 3 30 30 H 1.08997 * 109.50913 * 303.15621 * 7 5 3 31 31 H 1.09009 * 109.50414 * 63.28464 * 7 5 3 32 32 H 1.09000 * 109.47828 * 292.41938 * 9 8 7 33 33 H 1.09007 * 109.46931 * 52.41409 * 9 8 7 34 34 H 1.09002 * 109.47450 * 172.40844 * 9 8 7 35 35 H 1.09003 * 109.50233 * 181.45019 * 10 8 7 36 36 H 1.08998 * 109.54985 * 61.33932 * 10 8 7 37 37 H 1.08998 * 109.50825 * 296.91406 * 11 10 8 38 38 H 1.09004 * 109.50507 * 176.79149 * 11 10 8 39 39 H 1.09006 * 109.45636 * 179.97438 * 13 2 1 40 40 H 1.09002 * 109.49484 * 298.56335 * 14 13 2 41 41 H 1.09000 * 109.49742 * 58.66134 * 14 13 2 42 42 H 1.09001 * 109.59760 * 294.86614 * 15 14 13 43 43 H 1.09004 * 109.70005 * 174.50771 * 15 14 13 44 44 H 0.97002 * 119.99949 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.58540 * 293.81835 * 25 16 15 46 46 H 1.09005 * 109.58673 * 173.39977 * 25 16 15 47 47 H 1.08991 * 109.50182 * 301.34131 * 26 13 2 48 48 H 1.08998 * 109.49642 * 61.40870 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3486 1.1690 -0.0861 5 6 1.3892 2.4701 0.1071 6 1 0.5711 2.3618 0.8192 7 6 0.8269 2.8506 -1.2650 8 7 0.1632 4.1590 -1.1712 9 6 -0.4408 4.5363 -2.4561 10 6 1.1052 5.1889 -0.7094 11 6 1.6647 4.7850 0.6572 12 8 2.2783 3.4973 0.5538 13 6 2.1974 -1.2688 -0.0006 14 6 1.8280 -2.0703 -1.2508 15 6 2.6219 -3.3804 -1.2657 16 7 2.3849 -4.0910 -0.0017 17 6 1.9510 -5.3898 -0.0024 18 1 1.3188 -5.7476 -0.8015 19 6 2.3238 -6.2466 1.0242 20 7 3.2562 -5.8829 1.8791 21 14 1.5022 -7.9157 1.1925 22 1 1.7370 -8.7096 -0.0404 23 1 2.0738 -8.6334 2.3602 24 1 0.0422 -7.7310 1.3917 25 6 2.6217 -3.3814 1.2628 26 6 1.8281 -2.0712 1.2492 27 1 -0.3633 -0.0880 1.0239 28 1 -0.3634 0.9307 -0.4356 29 1 -0.3633 -0.8426 -0.5881 30 1 1.6398 2.9058 -1.9890 31 1 0.1051 2.0985 -1.5839 32 1 0.3462 4.7232 -3.1867 33 1 -1.0793 3.7265 -2.8091 34 1 -1.0376 5.4391 -2.3259 35 1 0.5866 6.1437 -0.6226 36 1 1.9227 5.2824 -1.4243 37 1 0.8542 4.7446 1.3849 38 1 2.4062 5.5169 0.9777 39 1 3.2691 -1.0694 -0.0009 40 1 0.7607 -2.2915 -1.2389 41 1 2.0696 -1.4886 -2.1404 42 1 3.6849 -3.1626 -1.3686 43 1 2.2933 -3.9997 -2.1003 44 1 3.5165 -6.4815 2.5966 45 1 3.6848 -3.1637 1.3660 46 1 2.2908 -4.0005 2.0967 47 1 2.0698 -1.4902 2.1392 48 1 0.7608 -2.2919 1.2376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005208770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:19 Heat of formation + Delta-G solvation = -37.490072 kcal Electronic energy + Delta-G solvation = -27404.195218 eV Core-core repulsion = 23688.401168 eV Total energy + Delta-G solvation = -3715.794050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64482 -39.11886 -37.30687 -35.99486 -35.09518 -32.77872 -31.60632 -30.15928 -29.62667 -28.95530 -26.94097 -25.75924 -24.50783 -24.47469 -22.17188 -22.05368 -20.88377 -19.48678 -18.86395 -17.36909 -16.96842 -16.61106 -16.36199 -15.82661 -15.51503 -15.31183 -14.85543 -14.67848 -14.43976 -14.06865 -13.77562 -13.58139 -13.27483 -13.01875 -13.00662 -12.79858 -12.56086 -12.47744 -12.32899 -12.09555 -11.90941 -11.67409 -11.46937 -11.09267 -11.01772 -10.80454 -10.73878 -10.33396 -10.20760 -10.07989 -9.97660 -9.77154 -9.65319 -9.40906 -8.86996 -8.53468 -8.30996 -6.62647 -5.77867 -3.26101 2.54457 2.80900 3.38079 3.42174 3.43545 3.44227 3.79560 4.37525 4.48729 4.49055 4.54338 4.70270 4.82285 4.92478 4.96990 5.10240 5.11717 5.22454 5.33082 5.36864 5.38720 5.42629 5.45220 5.45863 5.52399 5.56025 5.66516 5.74832 5.87710 6.08937 6.24605 6.33731 6.42382 6.46594 6.49835 6.58891 6.64069 6.75152 6.78633 6.95162 6.98270 7.37492 7.52588 7.70305 7.78832 8.28288 8.48104 9.22493 9.83821 10.42387 11.30412 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.032517 B = 0.002888 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.875597 B = 9691.868799 C = 9991.799771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.518 3.482 4 O -0.520 6.520 5 C 0.080 3.920 6 H 0.089 0.911 7 C 0.027 3.973 8 N -0.540 5.540 9 C 0.024 3.976 10 C 0.014 3.986 11 C 0.062 3.938 12 O -0.357 6.357 13 C 0.146 3.854 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.904 5.904 21 Si 0.905 3.095 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.145 4.145 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.255 0.745 45 H 0.020 0.980 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 21.544 -5.295 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.338 5.338 3 C 0.304 3.696 4 O -0.395 6.395 5 C 0.018 3.982 6 H 0.107 0.893 7 C -0.102 4.102 8 N -0.265 5.265 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.015 4.015 12 O -0.274 6.274 13 C 0.045 3.955 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.048 3.952 26 C -0.185 4.185 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.801 21.357 -4.809 23.594 hybrid contribution -0.203 -0.643 -0.528 0.857 sum -9.004 20.714 -5.337 23.208 Atomic orbital electron populations 1.21935 0.80064 1.03063 1.02457 1.48088 1.06941 1.05991 1.72829 1.19998 0.87901 0.84466 0.77279 1.90713 1.13881 1.86830 1.48074 1.21988 0.92327 0.87717 0.96172 0.89302 1.22752 0.98602 0.92335 0.96494 1.62240 1.32694 1.02133 1.29424 1.22402 0.98915 1.02062 0.89016 1.22864 0.95061 0.95744 0.97747 1.22746 0.98265 0.85006 0.95503 1.88134 1.35671 1.16547 1.87067 1.21229 0.97267 0.80544 0.96481 1.22372 1.01348 0.98112 0.95958 1.20872 0.95821 0.90840 0.90408 1.44041 1.77806 1.10281 0.99384 1.19122 1.23791 0.86128 1.09378 0.91845 1.25181 0.96829 0.97741 0.99688 1.69966 1.30077 1.36713 1.18088 0.86334 0.78979 0.83911 0.77262 1.20867 1.21605 1.21004 1.20778 0.95273 0.88541 0.90584 1.22573 1.01672 0.98991 0.95301 0.92275 0.91157 0.90311 0.93007 0.88618 0.95249 0.90947 0.90880 0.89309 0.93559 0.91987 0.87815 0.88677 0.92030 0.92986 0.96202 0.92463 0.93479 0.96155 0.88992 0.93085 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.06 59.85 0.54 1.29 16 2 N -0.60 -9.05 2.76 -173.89 -0.48 -9.53 16 3 C 0.52 8.37 6.94 -10.99 -0.08 8.30 16 4 O -0.52 -10.72 15.96 -13.45 -0.21 -10.93 16 5 C 0.08 1.00 2.37 -27.84 -0.07 0.94 16 6 H 0.09 0.98 7.33 -51.93 -0.38 0.60 16 7 C 0.03 0.28 4.66 -3.72 -0.02 0.26 16 8 N -0.54 -4.76 4.99 -242.59 -1.21 -5.97 16 9 C 0.02 0.16 9.63 60.06 0.58 0.74 16 10 C 0.01 0.11 5.66 -3.71 -0.02 0.09 16 11 C 0.06 0.57 7.01 37.21 0.26 0.83 16 12 O -0.36 -4.94 10.08 -54.24 -0.55 -5.49 16 13 C 0.15 2.63 2.48 -67.89 -0.17 2.47 16 14 C -0.14 -2.41 5.30 -26.61 -0.14 -2.55 16 15 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 16 N -0.59 -14.79 2.99 -172.32 -0.51 -15.31 16 17 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 18 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 19 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 20 N -0.90 -26.24 11.05 55.49 0.61 -25.62 16 21 Si 0.91 21.52 29.57 -169.99 -5.03 16.50 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.17 4.20 5.25 -3.71 -0.02 4.18 16 26 C -0.15 -2.81 5.34 -26.61 -0.14 -2.95 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.60 4.47 -51.93 -0.23 0.37 16 29 H 0.08 0.86 6.48 -51.93 -0.34 0.53 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.86 6.07 -51.92 -0.32 0.54 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.44 8.08 -51.92 -0.42 0.02 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.97 6.91 -51.93 -0.36 1.62 16 40 H 0.06 1.04 6.76 -51.93 -0.35 0.69 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.46 6.10 -51.93 -0.32 2.14 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -32.91 365.27 -9.54 -42.45 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -8.14 Total: -1.26 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 0.47 Total: 9.66 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -1.59 Total: -56.43 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.76 Total: -16.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.91 -9.54 -42.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005208770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.964 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds