Wall clock time and date at job start Fri Apr 10 2020 18:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 119.99919 * 2 1 4 4 O 1.21284 * 119.99908 * 184.69918 * 3 2 1 5 5 C 1.50696 * 120.00021 * 4.70650 * 3 2 1 6 6 H 1.09003 * 109.50683 * 39.67945 * 5 3 2 7 7 C 1.53092 * 109.50780 * 279.54412 * 5 3 2 8 8 N 1.47011 * 109.25985 * 183.21495 * 7 5 3 9 9 C 1.46899 * 111.00154 * 182.39098 * 8 7 5 10 10 C 1.47013 * 110.74901 * 58.62479 * 8 7 5 11 11 C 1.53102 * 109.25460 * 301.37822 * 10 8 7 12 12 O 1.43010 * 109.25767 * 56.85294 * 11 10 8 13 13 C 1.46503 * 119.99742 * 180.02562 * 2 1 3 14 14 C 1.53037 * 109.46263 * 60.02409 * 13 2 1 15 15 C 1.53196 * 109.31084 * 178.60130 * 14 13 2 16 16 N 1.46921 * 108.76535 * 54.65243 * 15 14 13 17 17 C 1.36937 * 120.62688 * 126.36009 * 16 15 14 18 18 H 1.07999 * 120.00354 * 328.69055 * 17 16 15 19 19 C 1.38816 * 120.00022 * 148.68474 * 17 16 15 20 20 N 1.31623 * 119.99854 * 349.25513 * 19 17 16 21 21 Si 1.86796 * 120.00137 * 169.24598 * 19 17 16 22 22 H 1.48503 * 109.47016 * 60.00757 * 21 19 17 23 23 H 1.48503 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47338 * 300.00643 * 21 19 17 25 25 C 1.46921 * 118.74024 * 306.38509 * 16 15 14 26 26 C 1.53041 * 109.45681 * 299.96429 * 13 2 1 27 27 H 1.09003 * 109.47084 * 265.08677 * 1 2 3 28 28 H 1.08997 * 109.47445 * 25.08222 * 1 2 3 29 29 H 1.08992 * 109.47213 * 145.08772 * 1 2 3 30 30 H 1.08997 * 109.50913 * 303.15621 * 7 5 3 31 31 H 1.09009 * 109.50414 * 63.28464 * 7 5 3 32 32 H 1.09000 * 109.47828 * 292.41938 * 9 8 7 33 33 H 1.09007 * 109.46931 * 52.41409 * 9 8 7 34 34 H 1.09002 * 109.47450 * 172.40844 * 9 8 7 35 35 H 1.09003 * 109.50233 * 181.45019 * 10 8 7 36 36 H 1.08998 * 109.54985 * 61.33932 * 10 8 7 37 37 H 1.08998 * 109.50825 * 296.91406 * 11 10 8 38 38 H 1.09004 * 109.50507 * 176.79149 * 11 10 8 39 39 H 1.09006 * 109.45636 * 179.97438 * 13 2 1 40 40 H 1.09002 * 109.49484 * 298.56335 * 14 13 2 41 41 H 1.09000 * 109.49742 * 58.66134 * 14 13 2 42 42 H 1.09001 * 109.59760 * 294.86614 * 15 14 13 43 43 H 1.09004 * 109.70005 * 174.50771 * 15 14 13 44 44 H 0.97002 * 119.99949 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.58540 * 293.81835 * 25 16 15 46 46 H 1.09005 * 109.58673 * 173.39977 * 25 16 15 47 47 H 1.08991 * 109.50182 * 301.34131 * 26 13 2 48 48 H 1.08998 * 109.49642 * 61.40870 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3486 1.1690 -0.0861 5 6 1.3892 2.4701 0.1071 6 1 0.5711 2.3618 0.8192 7 6 0.8269 2.8506 -1.2650 8 7 0.1632 4.1590 -1.1712 9 6 -0.4408 4.5363 -2.4561 10 6 1.1052 5.1889 -0.7094 11 6 1.6647 4.7850 0.6572 12 8 2.2783 3.4973 0.5538 13 6 2.1974 -1.2688 -0.0006 14 6 1.8280 -2.0703 -1.2508 15 6 2.6219 -3.3804 -1.2657 16 7 2.3849 -4.0910 -0.0017 17 6 1.9510 -5.3898 -0.0024 18 1 1.3188 -5.7476 -0.8015 19 6 2.3238 -6.2466 1.0242 20 7 3.2562 -5.8829 1.8791 21 14 1.5022 -7.9157 1.1925 22 1 1.7370 -8.7096 -0.0404 23 1 2.0738 -8.6334 2.3602 24 1 0.0422 -7.7310 1.3917 25 6 2.6217 -3.3814 1.2628 26 6 1.8281 -2.0712 1.2492 27 1 -0.3633 -0.0880 1.0239 28 1 -0.3634 0.9307 -0.4356 29 1 -0.3633 -0.8426 -0.5881 30 1 1.6398 2.9058 -1.9890 31 1 0.1051 2.0985 -1.5839 32 1 0.3462 4.7232 -3.1867 33 1 -1.0793 3.7265 -2.8091 34 1 -1.0376 5.4391 -2.3259 35 1 0.5866 6.1437 -0.6226 36 1 1.9227 5.2824 -1.4243 37 1 0.8542 4.7446 1.3849 38 1 2.4062 5.5169 0.9777 39 1 3.2691 -1.0694 -0.0009 40 1 0.7607 -2.2915 -1.2389 41 1 2.0696 -1.4886 -2.1404 42 1 3.6849 -3.1626 -1.3686 43 1 2.2933 -3.9997 -2.1003 44 1 3.5165 -6.4815 2.5966 45 1 3.6848 -3.1637 1.3660 46 1 2.2908 -4.0005 2.0967 47 1 2.0698 -1.4902 2.1392 48 1 0.7608 -2.2919 1.2376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005208770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:19 Heat of formation + Delta-G solvation = -60.298420 kcal Electronic energy + Delta-G solvation = -27405.184262 eV Core-core repulsion = 23688.401168 eV Total energy + Delta-G solvation = -3716.783094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73147 -40.20727 -38.86114 -36.88168 -36.49896 -34.45020 -32.82225 -31.76255 -31.24453 -29.76064 -28.00953 -27.20734 -25.85510 -25.14181 -23.88519 -23.63295 -21.71167 -20.93938 -20.27803 -18.78421 -18.41686 -17.79204 -17.27236 -16.94909 -16.67783 -16.51126 -16.05589 -15.75926 -15.61168 -15.38770 -15.24973 -14.88099 -14.78478 -14.30727 -14.22594 -14.08638 -13.94706 -13.49605 -13.20329 -13.18432 -12.93775 -12.81846 -12.71660 -12.60927 -12.54219 -12.39765 -12.09828 -12.00310 -11.89729 -11.80169 -11.48829 -11.34556 -10.81657 -10.74208 -10.56471 -9.65784 -9.54328 -8.66464 -7.86394 -5.38539 1.35608 1.49188 1.51061 1.58129 1.67661 2.51856 2.71069 2.88277 3.30596 3.44111 3.61648 3.65628 3.85360 3.87391 3.92977 4.04453 4.09008 4.18937 4.27885 4.32062 4.44001 4.45942 4.52965 4.58453 4.63322 4.63937 4.68393 4.72232 4.77829 4.86290 4.89412 4.96806 5.01735 5.03186 5.05180 5.13390 5.29276 5.44421 5.53113 5.64281 5.70170 5.74948 5.86732 5.98868 6.35440 6.41065 7.05125 7.14876 7.83120 8.37883 9.20217 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.032517 B = 0.002888 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.875597 B = 9691.868799 C = 9991.799771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.599 5.599 3 C 0.513 3.487 4 O -0.576 6.576 5 C 0.087 3.913 6 H 0.111 0.889 7 C 0.034 3.966 8 N -0.540 5.540 9 C 0.022 3.978 10 C 0.015 3.985 11 C 0.056 3.944 12 O -0.394 6.394 13 C 0.154 3.846 14 C -0.120 4.120 15 C 0.143 3.857 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.940 5.940 21 Si 0.973 3.027 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.183 3.817 26 C -0.127 4.127 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.114 0.886 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.004 0.996 43 H 0.066 0.934 44 H 0.250 0.750 45 H -0.014 1.014 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 23.015 -6.288 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.455 6.455 5 C 0.026 3.974 6 H 0.128 0.872 7 C -0.095 4.095 8 N -0.265 5.265 9 C -0.125 4.125 10 C -0.113 4.113 11 C -0.021 4.021 12 O -0.313 6.313 13 C 0.051 3.949 14 C -0.160 4.160 15 C 0.017 3.983 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.090 0.910 19 C -0.246 4.246 20 N -0.586 5.586 21 Si 0.801 3.199 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.198 1.198 25 C 0.056 3.944 26 C -0.167 4.167 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.132 0.868 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.022 0.978 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.004 0.996 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.182 22.861 -5.832 26.553 hybrid contribution 0.873 -1.033 -0.240 1.373 sum -11.310 21.828 -6.072 25.323 Atomic orbital electron populations 1.22254 0.77005 1.05025 1.03743 1.48016 1.08607 1.04490 1.72034 1.20753 0.87473 0.85858 0.75914 1.90686 1.16479 1.87676 1.50640 1.21945 0.91768 0.85653 0.98022 0.87163 1.22669 0.98382 0.94028 0.94418 1.62304 1.32206 1.01453 1.30549 1.22497 0.98915 1.03199 0.87902 1.22909 0.94972 0.96733 0.96696 1.23022 0.99087 0.83348 0.96598 1.88088 1.37421 1.18352 1.87424 1.20828 0.95953 0.82033 0.96064 1.22159 1.01530 0.95975 0.96343 1.21010 0.95663 0.92536 0.89088 1.44288 1.77952 1.10280 1.00675 1.19517 1.23440 0.87059 1.09330 0.91045 1.25994 0.97586 1.01410 0.99658 1.70158 1.31829 1.37861 1.18733 0.85262 0.78263 0.79478 0.76922 1.20119 1.22326 1.19840 1.20512 0.93923 0.90261 0.89694 1.22287 1.01413 0.96596 0.96377 0.91101 0.88232 0.89592 0.95185 0.86766 0.95674 0.90017 0.89193 0.86599 0.94795 0.90686 0.86444 0.92124 0.90248 0.91059 0.97816 0.91600 0.94087 0.99579 0.91946 0.92700 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 9.06 127.77 1.16 2.28 16 2 N -0.60 -17.00 2.76 -822.45 -2.27 -19.27 16 3 C 0.51 16.31 6.94 87.66 0.61 16.91 16 4 O -0.58 -24.54 15.96 15.13 0.24 -24.30 16 5 C 0.09 2.05 2.37 29.88 0.07 2.12 16 6 H 0.11 2.09 7.33 -2.39 -0.02 2.08 16 7 C 0.03 0.62 4.66 86.31 0.40 1.03 16 8 N -0.54 -7.87 4.99 -921.43 -4.59 -12.46 16 9 C 0.02 0.23 9.63 127.69 1.23 1.46 16 10 C 0.01 0.21 5.66 86.32 0.49 0.69 16 11 C 0.06 0.91 7.01 72.02 0.50 1.42 16 12 O -0.39 -10.63 10.08 -130.81 -1.32 -11.95 16 13 C 0.15 5.53 2.48 45.02 0.11 5.64 16 14 C -0.12 -4.03 5.30 30.67 0.16 -3.87 16 15 C 0.14 6.05 6.52 86.36 0.56 6.61 16 16 N -0.61 -30.85 2.99 -699.09 -2.09 -32.93 16 17 C -0.26 -14.35 9.58 84.03 0.81 -13.54 16 18 H 0.07 3.71 7.85 -2.91 -0.02 3.69 16 19 C -0.05 -2.86 5.05 84.86 0.43 -2.44 16 20 N -0.94 -56.37 11.05 21.65 0.24 -56.13 16 21 Si 0.97 44.48 29.57 68.60 2.03 46.51 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.18 9.12 5.25 86.36 0.45 9.58 16 26 C -0.13 -4.90 5.34 30.67 0.16 -4.74 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.26 4.47 -2.39 -0.01 1.25 16 29 H 0.09 1.52 6.48 -2.39 -0.02 1.50 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 1.62 6.07 -2.38 -0.01 1.61 16 32 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 0.69 8.08 -2.38 -0.02 0.68 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.06 2.62 6.91 -2.38 -0.02 2.61 16 40 H 0.08 2.42 6.76 -2.39 -0.02 2.41 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.07 2.63 7.93 -2.38 -0.02 2.62 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 45 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 46 H 0.06 3.48 6.10 -2.38 -0.01 3.46 16 47 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.07 2.61 7.72 -2.39 -0.02 2.59 16 Total: -1.00 -74.88 365.27 0.32 -74.56 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.93 Total: 12.84 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 7.15 Total: 23.14 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -8.71 Total: -120.80 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.08 Total: -36.24 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -74.88 0.32 -74.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005208770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.257 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds