Wall clock time and date at job start Fri Apr 10 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 120.00457 * 2 1 4 4 H 1.07998 * 120.00041 * 202.07330 * 3 2 1 5 5 C 1.38812 * 119.99768 * 22.06629 * 3 2 1 6 6 N 1.31622 * 119.99818 * 12.40972 * 5 3 2 7 7 Si 1.86794 * 120.00063 * 192.39835 * 5 3 2 8 8 H 1.48502 * 109.47003 * 90.00526 * 7 5 3 9 9 H 1.48500 * 109.47394 * 210.00080 * 7 5 3 10 10 H 1.48493 * 109.47402 * 330.00833 * 7 5 3 11 11 C 1.46507 * 119.99857 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.49622 * 179.97438 * 11 2 1 13 13 C 1.53039 * 109.52442 * 59.84870 * 11 2 1 14 14 C 1.53044 * 109.53234 * 178.66882 * 13 11 2 15 15 C 1.53195 * 109.31310 * 61.36818 * 14 13 11 16 16 N 1.46927 * 108.77394 * 305.35954 * 15 14 13 17 17 C 1.34772 * 120.62848 * 233.63216 * 16 15 14 18 18 O 1.21283 * 119.99521 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00394 * 359.97438 * 17 16 15 20 20 N 1.46899 * 109.47426 * 180.02562 * 19 17 16 21 21 C 1.47011 * 110.99975 * 293.63865 * 20 19 17 22 22 C 1.53097 * 109.26083 * 177.60338 * 21 20 19 23 23 O 1.43021 * 109.25471 * 56.85088 * 22 21 20 24 24 C 1.43018 * 113.73686 * 301.33071 * 23 22 21 25 25 C 1.47009 * 110.99978 * 170.00362 * 20 19 17 26 26 C 1.46926 * 118.73456 * 53.61149 * 16 15 14 27 27 H 1.09005 * 109.47069 * 274.30660 * 1 2 3 28 28 H 1.08999 * 109.47413 * 34.30254 * 1 2 3 29 29 H 1.08996 * 109.47766 * 154.30554 * 1 2 3 30 30 H 0.96998 * 119.99737 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.45911 * 58.65403 * 13 11 2 32 32 H 1.09001 * 109.45952 * 298.68847 * 13 11 2 33 33 H 1.08994 * 109.49989 * 301.41400 * 14 13 11 34 34 H 1.09006 * 109.49083 * 181.31504 * 14 13 11 35 35 H 1.08994 * 109.58517 * 65.14905 * 15 14 13 36 36 H 1.08997 * 109.58583 * 185.57113 * 15 14 13 37 37 H 1.08997 * 109.47333 * 300.00500 * 19 17 16 38 38 H 1.09003 * 109.46643 * 59.99998 * 19 17 16 39 39 H 1.09000 * 109.50849 * 297.53991 * 21 20 19 40 40 H 1.09005 * 109.50830 * 57.67322 * 21 20 19 41 41 H 1.08994 * 109.50732 * 296.91482 * 22 21 20 42 42 H 1.08998 * 109.50998 * 176.78415 * 22 21 20 43 43 H 1.09010 * 109.50673 * 298.73640 * 24 23 22 44 44 H 1.08997 * 109.51149 * 178.60737 * 24 23 22 45 45 H 1.08999 * 109.50696 * 302.32301 * 25 20 19 46 46 H 1.08991 * 109.50855 * 62.46090 * 25 20 19 47 47 H 1.08994 * 109.58823 * 66.18359 * 26 16 15 48 48 H 1.09005 * 109.57980 * 186.46031 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1703 1.2201 -0.3515 5 6 1.5320 2.3440 0.4516 6 7 0.3900 2.2700 1.1019 7 14 2.3215 4.0074 0.1369 8 1 1.8350 4.5493 -1.1573 9 1 1.9597 4.9424 1.2323 10 1 3.7975 3.8529 0.0852 11 6 2.1974 -1.2688 -0.0006 12 1 3.2691 -1.0701 -0.0009 13 6 1.8257 -2.0734 -1.2482 14 6 2.6157 -3.3841 -1.2659 15 6 2.2508 -4.2124 -0.0299 16 7 2.4688 -3.3927 1.1699 17 6 3.2423 -3.8426 2.1776 18 8 3.4141 -3.1566 3.1629 19 6 3.8928 -5.1985 2.0807 20 7 4.6764 -5.4538 3.2967 21 6 5.8175 -4.5317 3.3914 22 6 6.5700 -4.7921 4.6990 23 8 6.9762 -6.1626 4.7446 24 6 5.8897 -7.0884 4.6554 25 6 5.1303 -6.8512 3.3473 26 6 1.8278 -2.0730 1.2498 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8489 -0.5791 29 1 -0.3634 -0.9260 -0.4455 30 1 -0.0415 3.0793 1.4178 31 1 2.0652 -1.4931 -2.1392 32 1 0.7582 -2.2930 -1.2339 33 1 3.6834 -3.1656 -1.2551 34 1 2.3679 -3.9460 -2.1665 35 1 1.2032 -4.5085 -0.0848 36 1 2.8817 -5.1001 0.0144 37 1 3.1238 -5.9640 1.9771 38 1 4.5506 -5.2246 1.2119 39 1 6.4877 -4.6941 2.5473 40 1 5.4565 -3.5033 3.3779 41 1 5.9159 -4.5780 5.5442 42 1 7.4495 -4.1500 4.7469 43 1 5.2157 -6.9411 5.4994 44 1 6.2772 -8.1070 4.6717 45 1 4.2677 -7.5159 3.3016 46 1 5.7895 -7.0506 2.5025 47 1 0.7458 -2.1947 1.2994 48 1 2.1779 -1.5502 2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027370428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:37 Heat of formation + Delta-G solvation = -37.763247 kcal Electronic energy + Delta-G solvation = -27298.453984 eV Core-core repulsion = 23582.648088 eV Total energy + Delta-G solvation = -3715.805896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.31919 -39.27233 -37.46884 -35.53764 -35.09178 -32.39474 -31.36801 -31.25393 -29.79090 -28.45231 -26.02345 -25.74346 -24.36435 -24.17614 -23.24678 -21.69248 -20.65800 -19.55928 -18.57617 -17.23381 -16.74953 -16.60159 -16.22805 -15.70494 -15.51740 -15.22181 -15.02010 -14.65244 -14.36058 -14.16397 -13.87023 -13.76067 -13.61698 -13.04057 -12.87309 -12.63948 -12.37928 -12.33816 -12.15005 -11.86297 -11.54986 -11.42513 -11.20378 -11.03757 -10.81222 -10.75710 -10.61816 -10.41078 -10.33284 -10.17800 -9.99592 -9.84105 -9.74880 -9.41149 -8.59577 -8.53512 -8.29197 -6.76864 -5.72344 -3.18372 2.82776 3.02404 3.39254 3.45371 3.46982 3.62448 3.76066 4.48029 4.51786 4.67351 4.79317 4.87372 4.93068 4.97536 5.04282 5.10645 5.17017 5.21731 5.26958 5.35567 5.43134 5.49005 5.50512 5.55630 5.58250 5.72014 5.80801 5.84459 5.90422 5.98352 6.10026 6.21401 6.36110 6.47397 6.61358 6.69758 6.74146 6.77599 6.92869 6.97299 6.98538 7.38395 7.68392 7.72054 7.81403 8.38438 8.45438 9.23367 9.85878 10.34078 11.32425 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.003293 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.500083 B = 8501.667102 C = 9442.657959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.169 3.831 12 H 0.063 0.937 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.108 3.892 16 N -0.608 5.608 17 C 0.511 3.489 18 O -0.524 6.524 19 C 0.039 3.961 20 N -0.520 5.520 21 C 0.012 3.988 22 C 0.066 3.934 23 O -0.390 6.390 24 C 0.065 3.935 25 C 0.018 3.982 26 C 0.100 3.900 27 H 0.029 0.971 28 H 0.044 0.956 29 H -0.001 1.001 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.060 0.940 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 -20.455 -0.341 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.081 0.919 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.343 5.343 17 C 0.297 3.703 18 O -0.399 6.399 19 C -0.092 4.092 20 N -0.245 5.245 21 C -0.115 4.115 22 C -0.011 4.011 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 C -0.024 4.024 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.838 -19.872 0.700 21.028 hybrid contribution 0.378 0.842 -1.021 1.377 sum 7.216 -19.030 -0.321 20.355 Atomic orbital electron populations 1.20794 0.82549 0.95608 0.99326 1.43940 1.01871 1.00017 1.85525 1.19232 0.97876 0.85155 1.36319 0.91372 1.25025 0.97783 0.98531 0.98195 1.70072 1.18327 1.27081 1.39608 0.86227 0.78798 0.84020 0.77330 1.21526 1.21707 1.20496 1.20615 0.96385 0.86224 0.90784 0.91871 1.22086 0.99657 0.94926 1.00629 1.21904 1.00988 0.97360 0.96725 1.21722 1.01279 0.93392 0.85137 1.48316 1.49212 1.19231 1.17558 1.20347 0.79252 0.87787 0.82877 1.90677 1.60690 1.58004 1.30576 1.22019 0.98302 0.96713 0.92204 1.61853 1.22517 1.03149 1.37007 1.22985 0.91111 0.99710 0.97711 1.22669 0.99211 0.82414 0.96773 1.87961 1.32378 1.16006 1.94469 1.22626 0.89032 0.93360 0.96189 1.22819 0.99583 0.90029 0.98614 1.22528 0.96673 0.80885 1.02298 0.95315 0.93698 0.98282 0.93707 0.91710 0.92214 0.91844 0.91260 0.91414 0.90690 0.88015 0.91964 0.94497 0.87328 0.91903 0.88388 0.92156 0.88535 0.89592 0.93948 0.92162 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.91 59.84 0.47 4.38 16 2 N -0.59 -14.61 2.82 -173.35 -0.49 -15.10 16 3 C -0.26 -7.05 9.60 -15.06 -0.14 -7.19 16 4 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 5 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 6 N -0.91 -26.49 10.63 55.49 0.59 -25.90 16 7 Si 0.91 22.05 29.57 -169.99 -5.03 17.02 16 8 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.17 3.40 2.74 -67.81 -0.19 3.21 16 12 H 0.06 1.35 7.86 -51.93 -0.41 0.94 16 13 C -0.13 -2.14 5.13 -26.69 -0.14 -2.27 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 15 C 0.11 1.20 6.34 -3.71 -0.02 1.17 16 16 N -0.61 -9.23 2.97 -172.77 -0.51 -9.75 16 17 C 0.51 7.98 7.41 -10.99 -0.08 7.90 16 18 O -0.52 -10.38 13.76 5.55 0.08 -10.31 16 19 C 0.04 0.44 3.79 -4.98 -0.02 0.42 16 20 N -0.52 -6.28 4.46 -235.76 -1.05 -7.34 16 21 C 0.01 0.16 5.29 -3.71 -0.02 0.14 16 22 C 0.07 0.76 7.01 37.21 0.26 1.02 16 23 O -0.39 -4.55 10.83 -35.23 -0.38 -4.93 16 24 C 0.07 0.59 7.01 37.21 0.26 0.86 16 25 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 26 C 0.10 1.91 5.79 -3.71 -0.02 1.89 16 27 H 0.03 0.76 7.41 -51.93 -0.39 0.37 16 28 H 0.04 1.17 7.20 -51.93 -0.37 0.80 16 29 H 0.00 -0.03 6.45 -51.93 -0.34 -0.36 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.61 5.93 -51.93 -0.31 0.31 16 37 H 0.10 0.92 7.84 -51.93 -0.41 0.51 16 38 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 1.65 5.88 -51.93 -0.31 1.35 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 1.17 7.52 -51.93 -0.39 0.78 16 48 H 0.09 2.09 7.00 -51.93 -0.36 1.72 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -32.54 364.33 -9.43 -41.97 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.22 Total: -1.12 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 0.09 Total: 9.96 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -1.46 Total: -58.08 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.30 Total: -15.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.54 -9.43 -41.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027370428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.204 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds