Wall clock time and date at job start Fri Apr 10 2020 18:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 120.00457 * 2 1 4 4 H 1.07998 * 120.00041 * 202.07330 * 3 2 1 5 5 C 1.38812 * 119.99768 * 22.06629 * 3 2 1 6 6 N 1.31622 * 119.99818 * 12.40972 * 5 3 2 7 7 Si 1.86794 * 120.00063 * 192.39835 * 5 3 2 8 8 H 1.48502 * 109.47003 * 90.00526 * 7 5 3 9 9 H 1.48500 * 109.47394 * 210.00080 * 7 5 3 10 10 H 1.48493 * 109.47402 * 330.00833 * 7 5 3 11 11 C 1.46507 * 119.99857 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.49622 * 179.97438 * 11 2 1 13 13 C 1.53039 * 109.52442 * 59.84870 * 11 2 1 14 14 C 1.53044 * 109.53234 * 178.66882 * 13 11 2 15 15 C 1.53195 * 109.31310 * 61.36818 * 14 13 11 16 16 N 1.46927 * 108.77394 * 305.35954 * 15 14 13 17 17 C 1.34772 * 120.62848 * 233.63216 * 16 15 14 18 18 O 1.21283 * 119.99521 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00394 * 359.97438 * 17 16 15 20 20 N 1.46899 * 109.47426 * 180.02562 * 19 17 16 21 21 C 1.47011 * 110.99975 * 293.63865 * 20 19 17 22 22 C 1.53097 * 109.26083 * 177.60338 * 21 20 19 23 23 O 1.43021 * 109.25471 * 56.85088 * 22 21 20 24 24 C 1.43018 * 113.73686 * 301.33071 * 23 22 21 25 25 C 1.47009 * 110.99978 * 170.00362 * 20 19 17 26 26 C 1.46926 * 118.73456 * 53.61149 * 16 15 14 27 27 H 1.09005 * 109.47069 * 274.30660 * 1 2 3 28 28 H 1.08999 * 109.47413 * 34.30254 * 1 2 3 29 29 H 1.08996 * 109.47766 * 154.30554 * 1 2 3 30 30 H 0.96998 * 119.99737 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.45911 * 58.65403 * 13 11 2 32 32 H 1.09001 * 109.45952 * 298.68847 * 13 11 2 33 33 H 1.08994 * 109.49989 * 301.41400 * 14 13 11 34 34 H 1.09006 * 109.49083 * 181.31504 * 14 13 11 35 35 H 1.08994 * 109.58517 * 65.14905 * 15 14 13 36 36 H 1.08997 * 109.58583 * 185.57113 * 15 14 13 37 37 H 1.08997 * 109.47333 * 300.00500 * 19 17 16 38 38 H 1.09003 * 109.46643 * 59.99998 * 19 17 16 39 39 H 1.09000 * 109.50849 * 297.53991 * 21 20 19 40 40 H 1.09005 * 109.50830 * 57.67322 * 21 20 19 41 41 H 1.08994 * 109.50732 * 296.91482 * 22 21 20 42 42 H 1.08998 * 109.50998 * 176.78415 * 22 21 20 43 43 H 1.09010 * 109.50673 * 298.73640 * 24 23 22 44 44 H 1.08997 * 109.51149 * 178.60737 * 24 23 22 45 45 H 1.08999 * 109.50696 * 302.32301 * 25 20 19 46 46 H 1.08991 * 109.50855 * 62.46090 * 25 20 19 47 47 H 1.08994 * 109.58823 * 66.18359 * 26 16 15 48 48 H 1.09005 * 109.57980 * 186.46031 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1703 1.2201 -0.3515 5 6 1.5320 2.3440 0.4516 6 7 0.3900 2.2700 1.1019 7 14 2.3215 4.0074 0.1369 8 1 1.8350 4.5493 -1.1573 9 1 1.9597 4.9424 1.2323 10 1 3.7975 3.8529 0.0852 11 6 2.1974 -1.2688 -0.0006 12 1 3.2691 -1.0701 -0.0009 13 6 1.8257 -2.0734 -1.2482 14 6 2.6157 -3.3841 -1.2659 15 6 2.2508 -4.2124 -0.0299 16 7 2.4688 -3.3927 1.1699 17 6 3.2423 -3.8426 2.1776 18 8 3.4141 -3.1566 3.1629 19 6 3.8928 -5.1985 2.0807 20 7 4.6764 -5.4538 3.2967 21 6 5.8175 -4.5317 3.3914 22 6 6.5700 -4.7921 4.6990 23 8 6.9762 -6.1626 4.7446 24 6 5.8897 -7.0884 4.6554 25 6 5.1303 -6.8512 3.3473 26 6 1.8278 -2.0730 1.2498 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8489 -0.5791 29 1 -0.3634 -0.9260 -0.4455 30 1 -0.0415 3.0793 1.4178 31 1 2.0652 -1.4931 -2.1392 32 1 0.7582 -2.2930 -1.2339 33 1 3.6834 -3.1656 -1.2551 34 1 2.3679 -3.9460 -2.1665 35 1 1.2032 -4.5085 -0.0848 36 1 2.8817 -5.1001 0.0144 37 1 3.1238 -5.9640 1.9771 38 1 4.5506 -5.2246 1.2119 39 1 6.4877 -4.6941 2.5473 40 1 5.4565 -3.5033 3.3779 41 1 5.9159 -4.5780 5.5442 42 1 7.4495 -4.1500 4.7469 43 1 5.2157 -6.9411 5.4994 44 1 6.2772 -8.1070 4.6717 45 1 4.2677 -7.5159 3.3016 46 1 5.7895 -7.0506 2.5025 47 1 0.7458 -2.1947 1.2994 48 1 2.1779 -1.5502 2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027370428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:35 Heat of formation + Delta-G solvation = -61.437747 kcal Electronic energy + Delta-G solvation = -27299.480587 eV Core-core repulsion = 23582.648088 eV Total energy + Delta-G solvation = -3716.832499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.44204 -40.26580 -38.85923 -36.79126 -36.45063 -34.00497 -32.81316 -32.11665 -31.12818 -29.74115 -28.07320 -26.84248 -25.63460 -24.99788 -24.77780 -23.04983 -21.53773 -20.99072 -19.85752 -18.79998 -18.29509 -17.54565 -17.09943 -17.04929 -16.66179 -16.60457 -16.01159 -15.85747 -15.69861 -15.34552 -15.20555 -15.14423 -14.75750 -14.37471 -14.32674 -14.04705 -13.81082 -13.48687 -13.21872 -13.03253 -12.93380 -12.83658 -12.49503 -12.40666 -12.28362 -12.21328 -12.15165 -12.08134 -11.73484 -11.67850 -11.49750 -11.38607 -10.93770 -10.66661 -10.53237 -9.66229 -9.38032 -8.78435 -7.85866 -5.34115 1.43268 1.44178 1.53278 1.65031 1.90303 2.48251 2.75206 2.96081 3.27484 3.50523 3.62040 3.93128 3.95037 4.00884 4.05710 4.11965 4.13474 4.19690 4.26115 4.28180 4.37690 4.38036 4.44687 4.61464 4.63569 4.69710 4.74925 4.79245 4.82696 4.86143 4.91462 4.95184 5.00769 5.05248 5.16090 5.25867 5.41837 5.50559 5.56278 5.60799 5.70368 5.78440 5.94364 6.15979 6.29924 6.52433 7.12149 7.25314 7.84375 8.26417 9.16847 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.003293 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.500083 B = 8501.667102 C = 9442.657959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.266 4.266 4 H 0.067 0.933 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.970 3.030 8 H -0.281 1.281 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.168 3.832 12 H 0.042 0.958 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.103 3.897 16 N -0.608 5.608 17 C 0.502 3.498 18 O -0.578 6.578 19 C 0.049 3.951 20 N -0.543 5.543 21 C 0.018 3.982 22 C 0.069 3.931 23 O -0.402 6.402 24 C 0.057 3.943 25 C 0.021 3.979 26 C 0.117 3.883 27 H -0.003 1.003 28 H 0.018 0.982 29 H 0.036 0.964 30 H 0.248 0.752 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 -23.957 -2.285 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.397 4.397 4 H 0.084 0.916 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.208 1.208 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.060 3.940 12 H 0.060 0.940 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.018 4.018 16 N -0.342 5.342 17 C 0.291 3.709 18 O -0.457 6.457 19 C -0.081 4.081 20 N -0.269 5.269 21 C -0.110 4.110 22 C -0.008 4.008 23 O -0.321 6.321 24 C -0.019 4.019 25 C -0.106 4.106 26 C -0.009 4.009 27 H 0.015 0.985 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.143 0.857 45 H 0.129 0.871 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.695 -23.448 -1.286 24.712 hybrid contribution 0.142 1.851 -0.390 1.897 sum 7.837 -21.598 -1.676 23.037 Atomic orbital electron populations 1.20487 0.82531 0.96213 0.97230 1.44171 1.02196 1.01045 1.85807 1.19544 0.97955 0.86652 1.35502 0.91565 1.25795 0.98561 1.01882 0.98527 1.70243 1.19708 1.27453 1.40979 0.85229 0.78266 0.79731 0.77002 1.20796 1.22187 1.19624 1.20776 0.94683 0.85227 0.93318 0.93995 1.21926 1.00617 0.96459 0.97249 1.21890 1.00033 0.95259 0.98907 1.22114 1.03470 0.93762 0.82471 1.48359 1.48650 1.17876 1.19288 1.21323 0.78523 0.89197 0.81885 1.90666 1.62351 1.59852 1.32833 1.22047 0.99150 0.94066 0.92835 1.61799 1.22536 1.04653 1.37888 1.22808 0.91528 0.98272 0.98434 1.22605 0.99298 0.83035 0.95818 1.87944 1.33636 1.15984 1.94506 1.22886 0.88651 0.94112 0.96286 1.22906 1.00738 0.88307 0.98664 1.21905 0.96323 0.83104 0.99534 0.98454 0.96362 0.94554 0.94252 0.92668 0.91797 0.92052 0.87299 0.89693 0.86369 0.84547 0.89424 0.93808 0.90781 0.93271 0.87395 0.92832 0.85728 0.87068 0.92875 0.92612 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.91 127.77 1.01 9.99 16 2 N -0.61 -31.09 2.82 -702.36 -1.98 -33.07 16 3 C -0.27 -15.14 9.60 84.03 0.81 -14.33 16 4 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 5 C -0.05 -3.03 5.11 84.86 0.43 -2.60 16 6 N -0.94 -57.10 10.63 21.65 0.23 -56.87 16 7 Si 0.97 46.53 29.57 68.60 2.03 48.56 16 8 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 9 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 C 0.17 6.85 2.74 45.07 0.12 6.97 16 12 H 0.04 1.86 7.86 -2.39 -0.02 1.84 16 13 C -0.12 -3.71 5.13 30.62 0.16 -3.55 16 14 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 15 C 0.10 1.82 6.34 86.36 0.55 2.37 16 16 N -0.61 -17.63 2.97 -818.92 -2.43 -20.07 16 17 C 0.50 15.28 7.41 87.66 0.65 15.93 16 18 O -0.58 -23.96 13.76 -3.04 -0.04 -24.00 16 19 C 0.05 0.94 3.79 85.56 0.32 1.26 16 20 N -0.54 -11.97 4.46 -899.81 -4.01 -15.99 16 21 C 0.02 0.44 5.29 86.31 0.46 0.90 16 22 C 0.07 1.59 7.01 72.01 0.50 2.09 16 23 O -0.40 -8.80 10.83 -148.98 -1.61 -10.41 16 24 C 0.06 0.90 7.01 72.02 0.50 1.41 16 25 C 0.02 0.30 5.64 86.32 0.49 0.79 16 26 C 0.12 4.61 5.79 86.36 0.50 5.11 16 27 H 0.00 -0.16 7.41 -2.38 -0.02 -0.18 16 28 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 29 H 0.04 1.50 6.45 -2.39 -0.02 1.48 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.88 6.71 -2.39 -0.02 1.86 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.12 1.16 5.93 -2.39 -0.01 1.14 16 37 H 0.14 1.68 7.84 -2.39 -0.02 1.66 16 38 H 0.09 1.28 7.67 -2.39 -0.02 1.26 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 2.37 5.88 -2.38 -0.01 2.36 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.11 1.07 8.09 -2.39 -0.02 1.05 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 2.22 7.52 -2.39 -0.02 2.20 16 48 H 0.04 2.03 7.00 -2.38 -0.02 2.01 16 Total: -1.00 -77.28 364.33 -0.20 -77.48 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.93 Total: 10.24 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.69 Total: 24.13 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -8.20 Total: -125.99 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -1.65 Total: -34.42 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -77.28 -0.20 -77.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027370428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.046 kcal (2) G-P(sol) polarization free energy of solvation -77.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds