Wall clock time and date at job start Fri Apr 10 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47010 * 110.99915 * 2 1 4 4 C 1.53106 * 109.25548 * 182.38969 * 3 2 1 5 5 O 1.43013 * 109.26018 * 303.15173 * 4 3 2 6 6 C 1.43023 * 113.73745 * 58.67092 * 5 4 3 7 7 H 1.09004 * 109.50540 * 61.30138 * 6 5 4 8 8 C 1.50701 * 109.50666 * 181.39457 * 6 5 4 9 9 O 1.21280 * 119.99781 * 4.99513 * 8 6 5 10 10 N 1.34771 * 119.99622 * 185.00189 * 8 6 5 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.01565 * 305.06387 * 12 11 10 14 14 C 1.53880 * 110.03278 * 66.45010 * 12 11 10 15 15 C 1.54271 * 106.59738 * 119.28587 * 14 12 11 16 16 C 1.54890 * 104.19427 * 23.60943 * 15 14 12 17 17 H 1.09001 * 110.75219 * 80.37527 * 16 15 14 18 18 N 1.46497 * 110.75821 * 203.74021 * 16 15 14 19 19 C 1.36933 * 120.00050 * 273.55278 * 18 16 15 20 20 H 1.07995 * 120.00415 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99913 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00013 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99998 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47011 * 89.99952 * 23 21 19 25 25 H 1.48506 * 109.47396 * 210.00243 * 23 21 19 26 26 H 1.48504 * 109.47360 * 330.00458 * 23 21 19 27 27 C 1.54265 * 110.03750 * 183.62099 * 12 11 10 28 28 C 1.47012 * 110.99758 * 123.63586 * 2 1 3 29 29 H 1.08998 * 109.47030 * 63.94778 * 1 2 3 30 30 H 1.08998 * 109.47285 * 183.95446 * 1 2 3 31 31 H 1.09009 * 109.46948 * 303.95098 * 1 2 3 32 32 H 1.09005 * 109.50651 * 62.46604 * 3 2 1 33 33 H 1.08994 * 109.51379 * 302.32636 * 3 2 1 34 34 H 1.08997 * 109.50688 * 183.21750 * 4 3 2 35 35 H 1.08996 * 109.53581 * 63.10737 * 4 3 2 36 36 H 0.96996 * 120.00772 * 359.97438 * 10 8 6 37 37 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 38 38 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 39 39 H 1.08993 * 110.03307 * 238.56968 * 14 12 11 40 40 H 1.09004 * 110.03056 * 359.95416 * 14 12 11 41 41 H 1.08996 * 110.48440 * 142.28773 * 15 14 12 42 42 H 1.08997 * 110.48722 * 264.93304 * 15 14 12 43 43 H 0.97000 * 119.99846 * 93.54762 * 18 16 15 44 44 H 0.97002 * 120.00265 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.47802 * 335.78404 * 27 12 11 46 46 H 1.08995 * 110.48948 * 98.42034 * 27 12 11 47 47 H 1.08998 * 109.50881 * 57.67205 * 28 2 1 48 48 H 1.08998 * 109.51043 * 297.54096 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5250 -0.7850 1.0710 7 1 3.8391 -1.3087 0.1680 8 6 4.0741 -1.4951 2.2815 9 8 4.7403 -0.8860 3.0914 10 7 3.8250 -2.8070 2.4638 11 6 4.3593 -3.4974 3.6403 12 6 3.9333 -4.9665 3.6068 13 1 2.8490 -5.0386 3.5210 14 6 4.6045 -5.6831 2.4220 15 6 5.4680 -6.8121 3.0218 16 6 4.8167 -7.0983 4.3976 17 1 3.9384 -7.7339 4.2844 18 7 5.7846 -7.7064 5.3139 19 6 5.9681 -9.0634 5.3143 20 1 5.3990 -9.6855 4.6394 21 6 6.8856 -9.6395 6.1822 22 7 7.0624 -10.9437 6.1822 23 14 7.8705 -8.5635 7.3490 24 1 7.1302 -8.4129 8.6275 25 1 9.1886 -9.1952 7.6117 26 1 8.0758 -7.2267 6.7357 27 6 4.4122 -5.6850 4.8851 28 6 1.9958 -0.7602 1.1427 29 1 -0.3633 0.4513 -0.9232 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8525 32 1 1.6829 1.8825 0.9111 33 1 1.6135 1.9092 -0.8681 34 1 3.9223 2.3397 -0.0029 35 1 3.8391 0.8647 -0.9963 36 1 3.2920 -3.2941 1.8161 37 1 5.4475 -3.4341 3.6356 38 1 3.9720 -3.0277 4.5444 39 1 3.8461 -6.1038 1.7618 40 1 5.2332 -4.9841 1.8704 41 1 5.4293 -7.6990 2.3894 42 1 6.4977 -6.4780 3.1494 43 1 6.2955 -7.1477 5.9203 44 1 7.7033 -11.3463 6.7889 45 1 5.2713 -5.1688 5.3136 46 1 3.6030 -5.7493 5.6125 47 1 1.6133 -1.7803 1.1087 48 1 1.6828 -0.2843 2.0720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086664220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:41 Heat of formation + Delta-G solvation = -66.533505 kcal Electronic energy + Delta-G solvation = -26030.956046 eV Core-core repulsion = 22313.902578 eV Total energy + Delta-G solvation = -3717.053468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70728 -39.24260 -38.13721 -36.18574 -35.04381 -33.51907 -32.10219 -30.99754 -29.55569 -28.90912 -27.61082 -25.71092 -24.64208 -23.99966 -22.72202 -21.34441 -20.69456 -19.92432 -19.45076 -17.78186 -17.51796 -17.09630 -16.49277 -16.17514 -15.81851 -15.52538 -15.36840 -15.06298 -14.82584 -14.46326 -14.27656 -14.03565 -13.49976 -13.18105 -12.97844 -12.88616 -12.71910 -12.47379 -12.44781 -12.25119 -12.21487 -11.91666 -11.33113 -11.26528 -11.00313 -10.85133 -10.65543 -10.58787 -10.41237 -10.25203 -10.18889 -9.98650 -9.82696 -9.57942 -9.24600 -9.02692 -8.89776 -7.25206 -5.76760 -3.12102 2.33213 2.54203 3.21116 3.38892 3.42239 3.46706 3.64598 4.23693 4.35713 4.38683 4.52674 4.59843 4.63236 4.70975 4.79198 4.82335 4.89766 4.92562 4.96224 5.01276 5.18371 5.24805 5.33377 5.39275 5.40696 5.46864 5.58032 5.61560 5.70064 5.79483 5.92028 5.96093 6.07360 6.20700 6.25164 6.26923 6.28068 6.30702 6.41543 6.58969 6.60865 6.79281 6.99584 7.25909 7.98944 8.00115 8.42877 9.21453 9.94265 10.13970 11.41551 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.002259 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.245627 B =12391.151801 C =12829.922236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.013 3.987 4 C 0.062 3.938 5 O -0.356 6.356 6 C 0.078 3.922 7 H 0.094 0.906 8 C 0.518 3.482 9 O -0.517 6.517 10 N -0.723 5.723 11 C 0.127 3.873 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.121 4.121 15 C -0.143 4.143 16 C 0.182 3.818 17 H 0.062 0.938 18 N -0.746 5.746 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.125 4.125 28 C 0.028 3.972 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.401 0.599 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.319 24.570 -15.330 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.273 6.273 6 C 0.016 3.984 7 H 0.112 0.888 8 C 0.302 3.698 9 O -0.391 6.391 10 N -0.377 5.377 11 C 0.004 3.996 12 C -0.119 4.119 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.184 4.184 16 C 0.072 3.928 17 H 0.080 0.920 18 N -0.387 5.387 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.164 4.164 28 C -0.100 4.100 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.543 24.603 -15.038 31.857 hybrid contribution 0.031 0.719 0.992 1.225 sum -13.512 25.322 -14.046 31.954 Atomic orbital electron populations 1.22411 0.86214 1.02509 1.01295 1.62222 1.08726 1.13776 1.41787 1.22875 0.96689 0.89750 1.02157 1.22766 0.92073 0.96742 0.89944 1.88143 1.69230 1.21638 1.48304 1.21949 0.92975 0.85841 0.97650 0.88838 1.20021 0.80897 0.82213 0.86702 1.90749 1.37902 1.65877 1.44587 1.45957 1.55339 1.09250 1.27118 1.21593 0.99347 0.91518 0.87113 1.21957 1.00320 0.92523 0.97135 0.90547 1.22228 0.99063 0.98087 0.96587 1.23029 0.99274 0.96825 0.99224 1.21129 0.92082 0.90926 0.88653 0.92043 1.42743 1.46664 1.05175 1.44127 1.19075 1.18848 0.81636 1.17727 0.89223 1.24685 0.99550 0.95444 0.99571 1.69701 1.38841 1.08680 1.40981 0.86554 0.80150 0.80129 0.81728 1.21090 1.21775 1.20265 1.22611 1.01004 0.97107 0.95709 1.22693 0.93995 1.00262 0.93071 0.90809 0.90853 0.95224 0.93550 0.89183 0.87711 0.91854 0.76472 0.91003 0.91409 0.92146 0.92226 0.92082 0.91902 0.80566 0.93081 0.91402 0.91437 0.88848 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.63 60.07 0.58 0.70 16 2 N -0.54 -3.65 4.99 -242.59 -1.21 -4.86 16 3 C 0.01 0.08 5.66 -3.71 -0.02 0.06 16 4 C 0.06 0.44 7.01 37.21 0.26 0.70 16 5 O -0.36 -4.00 10.01 -55.06 -0.55 -4.55 16 6 C 0.08 0.73 3.22 -27.83 -0.09 0.64 16 7 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.52 6.16 7.18 -10.99 -0.08 6.08 16 9 O -0.52 -8.65 16.51 -14.27 -0.24 -8.89 16 10 N -0.72 -6.85 5.26 -60.29 -0.32 -7.17 16 11 C 0.13 1.43 4.70 -4.04 -0.02 1.42 16 12 C -0.10 -1.12 2.98 -89.50 -0.27 -1.38 16 13 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.12 -1.44 6.13 -25.61 -0.16 -1.60 16 15 C -0.14 -2.34 6.51 -25.07 -0.16 -2.51 16 16 C 0.18 3.33 3.54 -65.94 -0.23 3.09 16 17 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 18 N -0.75 -17.37 5.06 -51.50 -0.26 -17.63 16 19 C -0.24 -6.79 10.46 -15.06 -0.16 -6.95 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 21 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 23 Si 0.88 22.21 27.73 -169.99 -4.71 17.50 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 C -0.13 -1.80 5.96 -25.08 -0.15 -1.95 16 28 C 0.03 0.21 4.89 -3.71 -0.02 0.19 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.03 0.15 8.14 -51.92 -0.42 -0.27 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.40 2.65 8.19 -40.82 -0.33 2.32 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.68 7.58 -51.93 -0.39 0.28 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.36 8.34 5.58 -40.82 -0.23 8.11 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 0.52 7.99 -51.93 -0.41 0.10 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -35.00 379.40 -9.95 -44.95 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.55 Total: 4.98 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.61 Total: -1.50 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -1.01 Total: -58.21 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.79 Total: -13.44 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.00 -9.95 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086664220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.581 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds