Wall clock time and date at job start Fri Apr 10 2020 18:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47010 * 110.99915 * 2 1 4 4 C 1.53106 * 109.25548 * 182.38969 * 3 2 1 5 5 O 1.43013 * 109.26018 * 303.15173 * 4 3 2 6 6 C 1.43023 * 113.73745 * 58.67092 * 5 4 3 7 7 H 1.09004 * 109.50540 * 61.30138 * 6 5 4 8 8 C 1.50701 * 109.50666 * 181.39457 * 6 5 4 9 9 O 1.21280 * 119.99781 * 4.99513 * 8 6 5 10 10 N 1.34771 * 119.99622 * 185.00189 * 8 6 5 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.01565 * 305.06387 * 12 11 10 14 14 C 1.53880 * 110.03278 * 66.45010 * 12 11 10 15 15 C 1.54271 * 106.59738 * 119.28587 * 14 12 11 16 16 C 1.54890 * 104.19427 * 23.60943 * 15 14 12 17 17 H 1.09001 * 110.75219 * 80.37527 * 16 15 14 18 18 N 1.46497 * 110.75821 * 203.74021 * 16 15 14 19 19 C 1.36933 * 120.00050 * 273.55278 * 18 16 15 20 20 H 1.07995 * 120.00415 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99913 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00013 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99998 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47011 * 89.99952 * 23 21 19 25 25 H 1.48506 * 109.47396 * 210.00243 * 23 21 19 26 26 H 1.48504 * 109.47360 * 330.00458 * 23 21 19 27 27 C 1.54265 * 110.03750 * 183.62099 * 12 11 10 28 28 C 1.47012 * 110.99758 * 123.63586 * 2 1 3 29 29 H 1.08998 * 109.47030 * 63.94778 * 1 2 3 30 30 H 1.08998 * 109.47285 * 183.95446 * 1 2 3 31 31 H 1.09009 * 109.46948 * 303.95098 * 1 2 3 32 32 H 1.09005 * 109.50651 * 62.46604 * 3 2 1 33 33 H 1.08994 * 109.51379 * 302.32636 * 3 2 1 34 34 H 1.08997 * 109.50688 * 183.21750 * 4 3 2 35 35 H 1.08996 * 109.53581 * 63.10737 * 4 3 2 36 36 H 0.96996 * 120.00772 * 359.97438 * 10 8 6 37 37 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 38 38 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 39 39 H 1.08993 * 110.03307 * 238.56968 * 14 12 11 40 40 H 1.09004 * 110.03056 * 359.95416 * 14 12 11 41 41 H 1.08996 * 110.48440 * 142.28773 * 15 14 12 42 42 H 1.08997 * 110.48722 * 264.93304 * 15 14 12 43 43 H 0.97000 * 119.99846 * 93.54762 * 18 16 15 44 44 H 0.97002 * 120.00265 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.47802 * 335.78404 * 27 12 11 46 46 H 1.08995 * 110.48948 * 98.42034 * 27 12 11 47 47 H 1.08998 * 109.50881 * 57.67205 * 28 2 1 48 48 H 1.08998 * 109.51043 * 297.54096 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5250 -0.7850 1.0710 7 1 3.8391 -1.3087 0.1680 8 6 4.0741 -1.4951 2.2815 9 8 4.7403 -0.8860 3.0914 10 7 3.8250 -2.8070 2.4638 11 6 4.3593 -3.4974 3.6403 12 6 3.9333 -4.9665 3.6068 13 1 2.8490 -5.0386 3.5210 14 6 4.6045 -5.6831 2.4220 15 6 5.4680 -6.8121 3.0218 16 6 4.8167 -7.0983 4.3976 17 1 3.9384 -7.7339 4.2844 18 7 5.7846 -7.7064 5.3139 19 6 5.9681 -9.0634 5.3143 20 1 5.3990 -9.6855 4.6394 21 6 6.8856 -9.6395 6.1822 22 7 7.0624 -10.9437 6.1822 23 14 7.8705 -8.5635 7.3490 24 1 7.1302 -8.4129 8.6275 25 1 9.1886 -9.1952 7.6117 26 1 8.0758 -7.2267 6.7357 27 6 4.4122 -5.6850 4.8851 28 6 1.9958 -0.7602 1.1427 29 1 -0.3633 0.4513 -0.9232 30 1 -0.3634 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8525 32 1 1.6829 1.8825 0.9111 33 1 1.6135 1.9092 -0.8681 34 1 3.9223 2.3397 -0.0029 35 1 3.8391 0.8647 -0.9963 36 1 3.2920 -3.2941 1.8161 37 1 5.4475 -3.4341 3.6356 38 1 3.9720 -3.0277 4.5444 39 1 3.8461 -6.1038 1.7618 40 1 5.2332 -4.9841 1.8704 41 1 5.4293 -7.6990 2.3894 42 1 6.4977 -6.4780 3.1494 43 1 6.2955 -7.1477 5.9203 44 1 7.7033 -11.3463 6.7889 45 1 5.2713 -5.1688 5.3136 46 1 3.6030 -5.7493 5.6125 47 1 1.6133 -1.7803 1.1087 48 1 1.6828 -0.2843 2.0720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086664220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:40 Heat of formation + Delta-G solvation = -93.327937 kcal Electronic energy + Delta-G solvation = -26032.117939 eV Core-core repulsion = 22313.902578 eV Total energy + Delta-G solvation = -3718.215362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47522 -40.09563 -39.27479 -36.80835 -36.36332 -35.05475 -33.20894 -32.52079 -30.45842 -29.69516 -28.94995 -26.56473 -25.23191 -25.03892 -24.42420 -22.08276 -21.57929 -21.16210 -20.59592 -19.55836 -18.54444 -17.87689 -17.16605 -17.06713 -16.65404 -16.54467 -16.31335 -16.06638 -15.94253 -15.53788 -15.34648 -14.88259 -14.73252 -14.39462 -14.24946 -14.14693 -13.98694 -13.38992 -13.30284 -13.09944 -12.94192 -12.81033 -12.69384 -12.43327 -12.31335 -12.10816 -11.96009 -11.84845 -11.80599 -11.69299 -11.51585 -11.24602 -10.93496 -10.87985 -10.76715 -10.15289 -9.51988 -9.27132 -8.01938 -5.34100 1.37880 1.40112 1.45260 1.47375 1.77006 2.48381 2.69781 3.01226 3.28831 3.53510 3.63852 3.65626 3.73647 3.80521 3.89135 3.96937 4.13816 4.16015 4.28913 4.38391 4.45576 4.47960 4.55495 4.62613 4.63210 4.64381 4.65074 4.75220 4.78175 4.79143 4.89922 4.90620 5.02488 5.07406 5.12141 5.22013 5.32226 5.44522 5.55511 5.57872 5.78491 5.79488 5.87096 5.98701 6.23609 6.49936 7.09397 7.15995 7.87977 8.05073 9.19654 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.002259 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.245627 B =12391.151801 C =12829.922236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.015 3.985 4 C 0.057 3.943 5 O -0.392 6.392 6 C 0.081 3.919 7 H 0.113 0.887 8 C 0.517 3.483 9 O -0.573 6.573 10 N -0.704 5.704 11 C 0.133 3.867 12 C -0.083 4.083 13 H 0.107 0.893 14 C -0.109 4.109 15 C -0.141 4.141 16 C 0.166 3.834 17 H 0.055 0.945 18 N -0.751 5.751 19 C -0.225 4.225 20 H 0.058 0.942 21 C -0.068 4.068 22 N -0.985 5.985 23 Si 0.953 3.047 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.255 1.255 27 C -0.119 4.119 28 C 0.034 3.966 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.035 0.965 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.419 0.581 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.364 0.636 44 H 0.257 0.743 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.117 0.883 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 26.725 -16.728 35.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.113 4.113 4 C -0.019 4.019 5 O -0.311 6.311 6 C 0.019 3.981 7 H 0.131 0.869 8 C 0.302 3.698 9 O -0.452 6.452 10 N -0.358 5.358 11 C 0.009 3.991 12 C -0.102 4.102 13 H 0.125 0.875 14 C -0.147 4.147 15 C -0.182 4.182 16 C 0.058 3.942 17 H 0.073 0.927 18 N -0.394 5.394 19 C -0.356 4.356 20 H 0.076 0.924 21 C -0.259 4.259 22 N -0.636 5.636 23 Si 0.781 3.219 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.180 1.180 27 C -0.158 4.158 28 C -0.095 4.095 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.257 0.743 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.197 0.803 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.135 0.865 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.281 26.789 -16.499 34.977 hybrid contribution 0.477 0.029 1.326 1.409 sum -14.803 26.818 -15.173 34.184 Atomic orbital electron populations 1.22480 0.85059 1.03218 1.01738 1.62274 1.09741 1.13809 1.41083 1.22897 0.96076 0.89823 1.02548 1.22981 0.92774 0.96971 0.89213 1.88096 1.70243 1.22671 1.50049 1.21995 0.94056 0.85282 0.96741 0.86929 1.20552 0.79907 0.82539 0.86795 1.90723 1.40567 1.67174 1.46693 1.45756 1.54648 1.08624 1.26804 1.21405 0.98296 0.91631 0.87742 1.21833 1.01913 0.91615 0.94872 0.87478 1.22161 0.99038 0.96527 0.97002 1.22895 0.99127 0.98076 0.98070 1.21453 0.90910 0.92794 0.89002 0.92743 1.42799 1.47815 1.03454 1.45303 1.19049 1.17181 0.83546 1.15852 0.92391 1.25493 1.01504 0.96763 1.02121 1.69878 1.40288 1.10813 1.42572 0.85432 0.77942 0.79038 0.79495 1.20400 1.22483 1.17980 1.22526 1.01240 0.94488 0.97512 1.22664 0.92583 1.01562 0.92671 0.89670 0.89929 0.95605 0.94692 0.87083 0.86626 0.90895 0.74330 0.92901 0.91768 0.89547 0.91193 0.93619 0.93686 0.80306 0.93462 0.91977 0.90363 0.86533 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.63 127.69 1.23 1.39 16 2 N -0.54 -5.91 4.99 -921.42 -4.59 -10.50 16 3 C 0.01 0.15 5.66 86.32 0.49 0.64 16 4 C 0.06 0.73 7.01 72.02 0.50 1.23 16 5 O -0.39 -8.48 10.01 -130.02 -1.30 -9.78 16 6 C 0.08 1.36 3.22 29.88 0.10 1.45 16 7 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 8 C 0.52 11.55 7.18 87.66 0.63 12.17 16 9 O -0.57 -19.18 16.51 15.93 0.26 -18.92 16 10 N -0.70 -11.37 5.26 -463.06 -2.44 -13.80 16 11 C 0.13 2.68 4.70 86.38 0.41 3.08 16 12 C -0.08 -1.57 2.98 -10.07 -0.03 -1.60 16 13 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 14 C -0.11 -2.24 6.13 31.32 0.19 -2.05 16 15 C -0.14 -4.48 6.51 31.67 0.21 -4.28 16 16 C 0.17 5.92 3.54 46.28 0.16 6.08 16 17 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 18 N -0.75 -34.79 5.06 -316.86 -1.60 -36.39 16 19 C -0.23 -12.82 10.46 84.04 0.88 -11.94 16 20 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 22 N -0.98 -63.65 13.97 21.65 0.30 -63.35 16 23 Si 0.95 46.31 27.73 68.60 1.90 48.21 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 27 C -0.12 -3.15 5.96 31.67 0.19 -2.96 16 28 C 0.03 0.42 4.89 86.32 0.42 0.85 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.03 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.42 3.77 8.19 -92.71 -0.76 3.01 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.34 7.58 -2.38 -0.02 1.32 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.36 16.36 5.58 -92.71 -0.52 15.85 16 44 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.06 1.74 7.73 -2.39 -0.02 1.72 16 46 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.12 0.85 7.99 -2.39 -0.02 0.83 16 48 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -79.29 379.40 -2.01 -81.31 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.39 Total: 22.70 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.84 Total: 0.52 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -8.33 Total: -124.04 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.04 Total: -28.70 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -79.29 -2.01 -81.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086664220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.020 kcal (2) G-P(sol) polarization free energy of solvation -79.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds