Wall clock time and date at job start Fri Apr 10 2020 18:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00161 * 2 1 4 4 C 1.46903 * 110.99869 * 236.05202 * 2 1 3 5 5 C 1.53007 * 109.46642 * 283.74494 * 4 2 1 6 6 C 1.50700 * 115.54841 * 280.16937 * 5 4 2 7 7 O 1.21273 * 120.00030 * 114.06892 * 6 5 4 8 8 N 1.34781 * 119.99724 * 294.06292 * 6 5 4 9 9 C 1.46499 * 119.99332 * 185.38700 * 8 6 5 10 10 H 1.08994 * 109.46604 * 36.76457 * 9 8 6 11 11 C 1.53048 * 109.45903 * 276.80311 * 9 8 6 12 12 C 1.53185 * 109.31197 * 301.34977 * 11 9 8 13 13 N 1.46935 * 108.77839 * 305.36246 * 12 11 9 14 14 C 1.36930 * 120.63232 * 233.63022 * 13 12 11 15 15 H 1.08006 * 119.99919 * 31.40180 * 14 13 12 16 16 C 1.38807 * 120.00480 * 211.39081 * 14 13 12 17 17 N 1.31617 * 119.99624 * 10.90410 * 16 14 13 18 18 Si 1.86801 * 120.00437 * 190.90142 * 16 14 13 19 19 H 1.48503 * 109.46924 * 60.00359 * 18 16 14 20 20 H 1.48495 * 109.46817 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46951 * 299.99879 * 18 16 14 22 22 C 1.46928 * 118.73344 * 53.60930 * 13 12 11 23 23 C 1.53037 * 109.45697 * 156.73907 * 9 8 6 24 24 H 1.09006 * 109.50204 * 178.63651 * 23 9 8 25 25 O 1.42897 * 109.49901 * 298.70383 * 23 9 8 26 26 C 1.53005 * 117.49594 * 134.46330 * 5 4 2 27 27 C 1.53001 * 60.00029 * 252.50977 * 26 5 4 28 28 H 1.08999 * 109.47121 * 193.27135 * 1 2 3 29 29 H 1.08995 * 109.46967 * 73.26431 * 1 2 3 30 30 H 1.09005 * 109.46309 * 313.27141 * 1 2 3 31 31 H 1.09006 * 109.46854 * 56.04823 * 3 2 1 32 32 H 1.08996 * 109.47210 * 176.05072 * 3 2 1 33 33 H 1.09000 * 109.47349 * 296.04996 * 3 2 1 34 34 H 1.09001 * 109.47248 * 43.74357 * 4 2 1 35 35 H 1.08997 * 109.47344 * 163.74570 * 4 2 1 36 36 H 0.96996 * 120.00008 * 5.38807 * 8 6 5 37 37 H 1.08996 * 109.49498 * 61.29986 * 11 9 8 38 38 H 1.08993 * 109.49716 * 181.39777 * 11 9 8 39 39 H 1.09004 * 109.58864 * 185.57920 * 12 11 9 40 40 H 1.09001 * 109.70573 * 65.22066 * 12 11 9 41 41 H 0.97003 * 120.00680 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.57982 * 186.60042 * 22 13 12 43 43 H 1.09005 * 109.58240 * 66.18220 * 22 13 12 44 44 H 0.96699 * 114.00072 * 180.02562 * 25 23 9 45 45 H 1.08998 * 117.50143 * 359.97438 * 26 5 4 46 46 H 1.08998 * 117.49620 * 145.01607 * 26 5 4 47 47 H 1.09005 * 117.49971 * 252.51704 * 27 26 5 48 48 H 1.08997 * 117.52362 * 107.47908 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 -1.1377 5 6 1.8582 -2.2627 -0.8519 6 6 2.9147 -2.8525 0.0465 7 8 2.6114 -3.2781 1.1408 8 7 4.1965 -2.9070 -0.3664 9 6 5.2022 -3.5854 0.4549 10 1 4.7569 -4.4632 0.9230 11 6 5.7044 -2.6292 1.5393 12 6 6.2985 -1.3813 0.8787 13 7 7.3291 -1.7995 -0.0814 14 6 8.5945 -1.2802 -0.0171 15 1 9.0124 -0.9926 0.9364 16 6 9.3403 -1.1235 -1.1773 17 7 8.7664 -1.2678 -2.3529 18 14 11.1583 -0.7076 -1.0701 19 1 11.8687 -1.7809 -0.3293 20 1 11.7216 -0.5943 -2.4393 21 1 11.3295 0.5833 -0.3565 22 6 6.9762 -2.7860 -1.1115 23 6 6.3744 -4.0182 -0.4286 24 1 7.1341 -4.5016 0.1857 25 8 5.9101 -4.9347 -1.4218 26 6 1.3079 -3.1481 -1.9719 27 6 0.4431 -2.8355 -0.7490 28 1 -0.3633 -1.0002 0.2359 29 1 -0.3633 0.2959 -0.9841 30 1 -0.3632 0.7045 0.7483 31 1 1.5899 1.9163 0.8525 32 1 3.0828 1.3432 0.0708 33 1 1.7044 1.8724 -0.9232 34 1 1.4326 -0.5145 -2.0366 35 1 3.0467 -0.5193 -1.2865 36 1 4.4531 -2.4970 -1.2072 37 1 4.8733 -2.3397 2.1823 38 1 6.4706 -3.1251 2.1352 39 1 6.7463 -0.7427 1.6403 40 1 5.5142 -0.8329 0.3570 41 1 9.2874 -1.1580 -3.1638 42 1 7.8710 -3.0742 -1.6631 43 1 6.2458 -2.3542 -1.7958 44 1 6.6018 -5.2516 -2.0186 45 1 1.0432 -2.6643 -2.9120 46 1 1.7101 -4.1574 -2.0591 47 1 0.2764 -3.6391 -0.0317 48 1 -0.3900 -2.1458 -0.8843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099972199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:04 Heat of formation + Delta-G solvation = -23.423274 kcal Electronic energy + Delta-G solvation = -28118.538730 eV Core-core repulsion = 24403.354662 eV Total energy + Delta-G solvation = -3715.184068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.17136 -38.56324 -37.22881 -35.48344 -35.22400 -33.95359 -31.86817 -29.67070 -28.87257 -28.08578 -27.58054 -25.40453 -23.59440 -22.46315 -22.24003 -21.97224 -21.64898 -19.45658 -18.59807 -17.10488 -16.78162 -16.50328 -15.65464 -15.52404 -15.15196 -14.95277 -14.85197 -14.37237 -14.24595 -13.97374 -13.69614 -13.47371 -13.22677 -12.79920 -12.53181 -12.36359 -12.16128 -12.04759 -11.88705 -11.80254 -11.73521 -11.60595 -11.18778 -11.05724 -10.95960 -10.83603 -10.43942 -10.30668 -10.18867 -10.14054 -10.00434 -9.61051 -9.34368 -9.24767 -8.61700 -8.45898 -8.34091 -6.71133 -5.88311 -3.36741 3.01660 3.32364 3.37954 3.39183 3.44779 3.66183 4.12854 4.39947 4.62924 4.66369 4.81015 4.91274 5.05494 5.12057 5.25241 5.28511 5.42106 5.43085 5.44765 5.53613 5.55564 5.62047 5.70749 5.75631 5.78374 5.88528 5.91637 5.92539 5.93783 5.98724 6.09846 6.11044 6.31893 6.52204 6.56840 6.77837 6.88082 6.95801 6.99866 7.06995 7.11141 7.45221 7.70350 8.05031 8.12145 8.38058 8.72198 9.11585 9.72595 10.30457 11.19397 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.004308 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.285571 B = 6498.141341 C = 7228.516047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.539 5.539 3 C 0.024 3.976 4 C 0.096 3.904 5 C -0.144 4.144 6 C 0.559 3.441 7 O -0.545 6.545 8 N -0.701 5.701 9 C 0.169 3.831 10 H 0.073 0.927 11 C -0.144 4.144 12 C 0.148 3.852 13 N -0.588 5.588 14 C -0.254 4.254 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.906 5.906 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.149 3.851 23 C 0.066 3.934 24 H 0.060 0.940 25 O -0.573 6.573 26 C -0.159 4.159 27 C -0.150 4.150 28 H 0.081 0.919 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.023 0.977 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.403 0.597 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.255 0.745 42 H 0.092 0.908 43 H 0.024 0.976 44 H 0.375 0.625 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.893 -0.888 -0.341 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.262 5.262 3 C -0.124 4.124 4 C -0.032 4.032 5 C -0.148 4.148 6 C 0.345 3.655 7 O -0.423 6.423 8 N -0.352 5.352 9 C 0.064 3.936 10 H 0.091 0.909 11 C -0.184 4.184 12 C 0.022 3.978 13 N -0.312 5.312 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.022 3.978 23 C 0.005 3.995 24 H 0.078 0.922 25 O -0.378 6.378 26 C -0.196 4.196 27 C -0.187 4.187 28 H 0.099 0.901 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.239 0.761 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.042 0.958 44 H 0.222 0.778 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.410 -1.291 1.010 14.503 hybrid contribution 1.453 0.824 -1.453 2.214 sum -12.957 -0.467 -0.443 12.973 Atomic orbital electron populations 1.22728 0.87625 1.03246 0.99699 1.61803 1.07788 1.13592 1.43044 1.22426 1.01388 0.88425 1.00139 1.21590 1.01137 0.89429 0.91038 1.21347 0.96234 0.94928 1.02286 1.19179 0.82434 0.77855 0.86071 1.90633 1.81738 1.48668 1.21256 1.45888 1.07275 1.56987 1.25060 1.20761 0.87383 0.94562 0.90915 0.90870 1.22385 1.00238 0.98502 0.97317 1.20899 0.91260 0.93139 0.92500 1.43916 1.07891 1.45473 1.33910 1.19154 0.89869 1.37093 0.92260 0.91686 1.25154 0.98929 0.99755 0.95452 1.69942 1.34896 1.53494 0.96682 0.86329 0.84938 0.78577 0.76653 1.20942 1.21593 1.20799 1.21380 0.99373 0.86520 0.90525 1.22968 0.94475 0.91954 0.90105 0.92205 1.86407 1.39884 1.64105 1.47377 1.23126 1.02936 1.00496 0.93080 1.23125 0.92313 1.03066 1.00173 0.90087 0.95898 0.91767 0.91380 0.90870 0.95860 0.93651 0.89790 0.76134 0.91463 0.91466 0.92693 0.96178 0.93484 0.89000 0.95835 0.77837 0.88138 0.88101 0.87954 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.74 60.07 0.53 0.68 16 2 N -0.54 -6.91 4.95 -251.25 -1.24 -8.16 16 3 C 0.02 0.28 9.49 60.07 0.57 0.85 16 4 C 0.10 1.22 5.02 -3.82 -0.02 1.20 16 5 C -0.14 -1.96 2.09 -155.65 -0.33 -2.28 16 6 C 0.56 9.67 7.01 -10.98 -0.08 9.59 16 7 O -0.55 -11.16 16.20 5.56 0.09 -11.07 16 8 N -0.70 -12.17 4.16 -53.77 -0.22 -12.40 16 9 C 0.17 3.11 2.41 -67.89 -0.16 2.95 16 10 H 0.07 1.42 7.72 -51.93 -0.40 1.02 16 11 C -0.14 -2.70 5.73 -26.61 -0.15 -2.85 16 12 C 0.15 3.08 6.25 -3.71 -0.02 3.06 16 13 N -0.59 -13.89 2.99 -172.31 -0.51 -14.41 16 14 C -0.25 -6.65 9.58 -15.06 -0.14 -6.80 16 15 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 16 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 17 N -0.91 -24.74 11.07 55.49 0.61 -24.13 16 18 Si 0.91 20.87 29.57 -169.99 -5.03 15.84 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.15 3.26 4.59 -3.71 -0.02 3.24 16 23 C 0.07 1.23 3.35 -26.61 -0.09 1.14 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 O -0.57 -9.73 13.21 -35.23 -0.47 -10.20 16 26 C -0.16 -1.78 9.88 -26.73 -0.26 -2.05 16 27 C -0.15 -1.74 8.37 -26.73 -0.22 -1.97 16 28 H 0.08 0.85 4.99 -51.93 -0.26 0.59 16 29 H 0.02 0.21 7.87 -51.93 -0.41 -0.20 16 30 H 0.06 0.61 7.95 -51.93 -0.41 0.19 16 31 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 32 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.50 7.62 -51.93 -0.40 0.10 16 35 H 0.08 1.16 7.86 -51.93 -0.41 0.76 16 36 H 0.40 7.01 6.87 -40.82 -0.28 6.73 16 37 H 0.07 1.27 7.89 -51.93 -0.41 0.86 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 41 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.09 2.25 6.11 -51.93 -0.32 1.93 16 43 H 0.02 0.54 6.64 -51.93 -0.34 0.20 16 44 H 0.38 5.09 9.08 45.56 0.41 5.51 16 45 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 46 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.10 1.32 8.00 -51.93 -0.42 0.90 16 48 H 0.10 1.01 5.68 -51.93 -0.29 0.71 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -30.47 373.92 -8.87 -39.34 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.24 Total: 12.71 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.49 Total: 6.83 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -1.37 Total: -59.09 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.38 Total: -21.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.47 -8.87 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099972199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.917 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds