Wall clock time and date at job start Fri Apr 10 2020 18:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00161 * 2 1 4 4 C 1.46903 * 110.99869 * 236.05202 * 2 1 3 5 5 C 1.53007 * 109.46642 * 283.74494 * 4 2 1 6 6 C 1.50700 * 115.54841 * 280.16937 * 5 4 2 7 7 O 1.21273 * 120.00030 * 114.06892 * 6 5 4 8 8 N 1.34781 * 119.99724 * 294.06292 * 6 5 4 9 9 C 1.46499 * 119.99332 * 185.38700 * 8 6 5 10 10 H 1.08994 * 109.46604 * 36.76457 * 9 8 6 11 11 C 1.53048 * 109.45903 * 276.80311 * 9 8 6 12 12 C 1.53185 * 109.31197 * 301.34977 * 11 9 8 13 13 N 1.46935 * 108.77839 * 305.36246 * 12 11 9 14 14 C 1.36930 * 120.63232 * 233.63022 * 13 12 11 15 15 H 1.08006 * 119.99919 * 31.40180 * 14 13 12 16 16 C 1.38807 * 120.00480 * 211.39081 * 14 13 12 17 17 N 1.31617 * 119.99624 * 10.90410 * 16 14 13 18 18 Si 1.86801 * 120.00437 * 190.90142 * 16 14 13 19 19 H 1.48503 * 109.46924 * 60.00359 * 18 16 14 20 20 H 1.48495 * 109.46817 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46951 * 299.99879 * 18 16 14 22 22 C 1.46928 * 118.73344 * 53.60930 * 13 12 11 23 23 C 1.53037 * 109.45697 * 156.73907 * 9 8 6 24 24 H 1.09006 * 109.50204 * 178.63651 * 23 9 8 25 25 O 1.42897 * 109.49901 * 298.70383 * 23 9 8 26 26 C 1.53005 * 117.49594 * 134.46330 * 5 4 2 27 27 C 1.53001 * 60.00029 * 252.50977 * 26 5 4 28 28 H 1.08999 * 109.47121 * 193.27135 * 1 2 3 29 29 H 1.08995 * 109.46967 * 73.26431 * 1 2 3 30 30 H 1.09005 * 109.46309 * 313.27141 * 1 2 3 31 31 H 1.09006 * 109.46854 * 56.04823 * 3 2 1 32 32 H 1.08996 * 109.47210 * 176.05072 * 3 2 1 33 33 H 1.09000 * 109.47349 * 296.04996 * 3 2 1 34 34 H 1.09001 * 109.47248 * 43.74357 * 4 2 1 35 35 H 1.08997 * 109.47344 * 163.74570 * 4 2 1 36 36 H 0.96996 * 120.00008 * 5.38807 * 8 6 5 37 37 H 1.08996 * 109.49498 * 61.29986 * 11 9 8 38 38 H 1.08993 * 109.49716 * 181.39777 * 11 9 8 39 39 H 1.09004 * 109.58864 * 185.57920 * 12 11 9 40 40 H 1.09001 * 109.70573 * 65.22066 * 12 11 9 41 41 H 0.97003 * 120.00680 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.57982 * 186.60042 * 22 13 12 43 43 H 1.09005 * 109.58240 * 66.18220 * 22 13 12 44 44 H 0.96699 * 114.00072 * 180.02562 * 25 23 9 45 45 H 1.08998 * 117.50143 * 359.97438 * 26 5 4 46 46 H 1.08998 * 117.49620 * 145.01607 * 26 5 4 47 47 H 1.09005 * 117.49971 * 252.51704 * 27 26 5 48 48 H 1.08997 * 117.52362 * 107.47908 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 -1.1377 5 6 1.8582 -2.2627 -0.8519 6 6 2.9147 -2.8525 0.0465 7 8 2.6114 -3.2781 1.1408 8 7 4.1965 -2.9070 -0.3664 9 6 5.2022 -3.5854 0.4549 10 1 4.7569 -4.4632 0.9230 11 6 5.7044 -2.6292 1.5393 12 6 6.2985 -1.3813 0.8787 13 7 7.3291 -1.7995 -0.0814 14 6 8.5945 -1.2802 -0.0171 15 1 9.0124 -0.9926 0.9364 16 6 9.3403 -1.1235 -1.1773 17 7 8.7664 -1.2678 -2.3529 18 14 11.1583 -0.7076 -1.0701 19 1 11.8687 -1.7809 -0.3293 20 1 11.7216 -0.5943 -2.4393 21 1 11.3295 0.5833 -0.3565 22 6 6.9762 -2.7860 -1.1115 23 6 6.3744 -4.0182 -0.4286 24 1 7.1341 -4.5016 0.1857 25 8 5.9101 -4.9347 -1.4218 26 6 1.3079 -3.1481 -1.9719 27 6 0.4431 -2.8355 -0.7490 28 1 -0.3633 -1.0002 0.2359 29 1 -0.3633 0.2959 -0.9841 30 1 -0.3632 0.7045 0.7483 31 1 1.5899 1.9163 0.8525 32 1 3.0828 1.3432 0.0708 33 1 1.7044 1.8724 -0.9232 34 1 1.4326 -0.5145 -2.0366 35 1 3.0467 -0.5193 -1.2865 36 1 4.4531 -2.4970 -1.2072 37 1 4.8733 -2.3397 2.1823 38 1 6.4706 -3.1251 2.1352 39 1 6.7463 -0.7427 1.6403 40 1 5.5142 -0.8329 0.3570 41 1 9.2874 -1.1580 -3.1638 42 1 7.8710 -3.0742 -1.6631 43 1 6.2458 -2.3542 -1.7958 44 1 6.6018 -5.2516 -2.0186 45 1 1.0432 -2.6643 -2.9120 46 1 1.7101 -4.1574 -2.0591 47 1 0.2764 -3.6391 -0.0317 48 1 -0.3900 -2.1458 -0.8843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099972199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:03 Heat of formation + Delta-G solvation = -46.260656 kcal Electronic energy + Delta-G solvation = -28119.529033 eV Core-core repulsion = 24403.354662 eV Total energy + Delta-G solvation = -3716.174371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48295 -39.92044 -38.50111 -36.84423 -36.46154 -35.58900 -33.63399 -31.38419 -30.49083 -29.06716 -28.44878 -27.24014 -24.91398 -23.84853 -23.43372 -23.30928 -22.95089 -20.78942 -20.15848 -18.81133 -18.09851 -18.01485 -16.99293 -16.71599 -16.63887 -16.15401 -16.08077 -15.69647 -15.65769 -15.41634 -15.28832 -14.88201 -14.54992 -14.38151 -13.86091 -13.57580 -13.38256 -13.27621 -13.23642 -13.00159 -12.83880 -12.78322 -12.72813 -12.67416 -12.63867 -12.20054 -12.07142 -11.96387 -11.83303 -11.33052 -11.25579 -11.07074 -10.94157 -10.62590 -10.57817 -9.95492 -9.23414 -8.64255 -7.88185 -5.39495 1.49605 1.50291 1.56932 1.70613 2.22342 2.50094 2.61280 3.15434 3.21322 3.29251 3.66730 3.67893 3.80310 3.84947 3.95011 4.08793 4.14012 4.26859 4.27561 4.37413 4.40917 4.47803 4.55948 4.57410 4.69403 4.71131 4.75858 4.80002 4.83712 4.94505 4.96291 4.99669 5.00961 5.08988 5.11532 5.18401 5.22828 5.32992 5.60552 5.62141 5.65721 6.05490 6.14879 6.38254 6.65106 6.84387 7.14640 7.34139 7.80174 8.34100 9.16799 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.004308 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.285571 B = 6498.141341 C = 7228.516047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.564 5.564 3 C 0.027 3.973 4 C 0.102 3.898 5 C -0.163 4.163 6 C 0.556 3.444 7 O -0.582 6.582 8 N -0.699 5.699 9 C 0.170 3.830 10 H 0.068 0.932 11 C -0.131 4.131 12 C 0.153 3.847 13 N -0.601 5.601 14 C -0.268 4.268 15 H 0.064 0.936 16 C -0.038 4.038 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.279 1.279 22 C 0.162 3.838 23 C 0.084 3.916 24 H 0.060 0.940 25 O -0.572 6.572 26 C -0.141 4.141 27 C -0.140 4.140 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.066 0.934 43 H 0.011 0.989 44 H 0.391 0.609 45 H 0.128 0.872 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 -0.799 -0.866 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.288 5.288 3 C -0.121 4.121 4 C -0.026 4.026 5 C -0.166 4.166 6 C 0.344 3.656 7 O -0.462 6.462 8 N -0.349 5.349 9 C 0.065 3.935 10 H 0.086 0.914 11 C -0.171 4.171 12 C 0.027 3.973 13 N -0.326 5.326 14 C -0.398 4.398 15 H 0.081 0.919 16 C -0.235 4.235 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.205 1.205 22 C 0.036 3.964 23 C 0.023 3.977 24 H 0.078 0.922 25 O -0.379 6.379 26 C -0.179 4.179 27 C -0.177 4.177 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.029 0.971 44 H 0.241 0.759 45 H 0.146 0.854 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.430 -1.210 0.480 15.485 hybrid contribution 1.741 0.789 -1.276 2.298 sum -13.690 -0.421 -0.795 13.719 Atomic orbital electron populations 1.22745 0.86077 1.03417 1.00933 1.61785 1.09403 1.14143 1.43507 1.22380 1.00179 0.88273 1.01231 1.21513 1.00388 0.88718 0.91971 1.21308 0.96135 0.95690 1.03487 1.19835 0.82765 0.76965 0.86061 1.90605 1.82244 1.50339 1.22984 1.45881 1.07430 1.56770 1.24808 1.20662 0.87518 0.94387 0.90913 0.91373 1.22222 1.00080 0.97556 0.97231 1.20885 0.90472 0.94006 0.91912 1.44097 1.07846 1.46098 1.34510 1.19422 0.91031 1.37020 0.92329 0.91871 1.25801 1.02426 1.00055 0.95170 1.70080 1.35962 1.54420 0.96984 0.85381 0.80606 0.78345 0.76285 1.20409 1.21887 1.20512 1.21172 0.97893 0.87343 0.90037 1.22597 0.94298 0.90749 0.90025 0.92179 1.86384 1.40703 1.63396 1.47404 1.23232 1.01296 0.99700 0.93679 1.23190 0.91945 1.02700 0.99896 0.90319 0.94214 0.91035 0.90442 0.92841 0.94573 0.91350 0.91775 0.76114 0.91593 0.90915 0.92918 0.96760 0.93891 0.91578 0.97139 0.75945 0.85393 0.88858 0.89469 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.74 127.69 1.12 1.40 16 2 N -0.56 -13.74 4.95 -948.81 -4.69 -18.43 16 3 C 0.03 0.60 9.49 127.69 1.21 1.81 16 4 C 0.10 2.46 5.02 86.30 0.43 2.89 16 5 C -0.16 -4.21 2.09 -52.92 -0.11 -4.32 16 6 C 0.56 19.13 7.01 87.66 0.61 19.74 16 7 O -0.58 -23.91 16.20 -3.01 -0.05 -23.96 16 8 N -0.70 -24.25 4.16 -442.41 -1.84 -26.09 16 9 C 0.17 6.26 2.41 45.02 0.11 6.37 16 10 H 0.07 2.62 7.72 -2.39 -0.02 2.60 16 11 C -0.13 -4.88 5.73 30.67 0.18 -4.71 16 12 C 0.15 6.41 6.25 86.36 0.54 6.95 16 13 N -0.60 -28.64 2.99 -699.08 -2.09 -30.73 16 14 C -0.27 -14.09 9.58 84.03 0.80 -13.29 16 15 H 0.06 3.28 7.85 -2.91 -0.02 3.26 16 16 C -0.04 -2.02 5.04 84.86 0.43 -1.59 16 17 N -0.93 -51.20 11.07 21.65 0.24 -50.96 16 18 Si 0.97 42.87 29.57 68.60 2.03 44.90 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.16 7.16 4.59 86.36 0.40 7.56 16 23 C 0.08 3.11 3.35 30.67 0.10 3.22 16 24 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 25 O -0.57 -18.84 13.21 -148.98 -1.97 -20.81 16 26 C -0.14 -2.85 9.88 30.60 0.30 -2.54 16 27 C -0.14 -2.99 8.37 30.60 0.26 -2.73 16 28 H 0.08 1.47 4.99 -2.39 -0.01 1.46 16 29 H 0.04 0.60 7.87 -2.39 -0.02 0.58 16 30 H 0.07 1.19 7.95 -2.38 -0.02 1.17 16 31 H 0.08 1.51 8.02 -2.38 -0.02 1.49 16 32 H 0.05 1.36 8.07 -2.39 -0.02 1.34 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 1.31 7.62 -2.39 -0.02 1.29 16 35 H 0.06 1.77 7.86 -2.39 -0.02 1.75 16 36 H 0.40 14.08 6.87 -92.71 -0.64 13.44 16 37 H 0.07 2.49 7.89 -2.39 -0.02 2.47 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 40 H 0.01 0.62 7.74 -2.39 -0.02 0.60 16 41 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 42 H 0.07 3.28 6.11 -2.39 -0.01 3.27 16 43 H 0.01 0.50 6.64 -2.38 -0.02 0.48 16 44 H 0.39 10.15 9.08 -74.06 -0.67 9.48 16 45 H 0.13 1.89 8.09 -2.39 -0.02 1.87 16 46 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 47 H 0.09 2.15 8.00 -2.38 -0.02 2.13 16 48 H 0.13 2.09 5.68 -2.39 -0.01 2.08 16 Total: -1.00 -64.90 373.92 -2.33 -67.23 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.34 Total: 38.11 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 6.38 Total: 20.76 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -8.38 Total: -126.22 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -2.02 Total: -44.77 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -64.90 -2.33 -67.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099972199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.967 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds