Wall clock time and date at job start Fri Apr 10 2020 18:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47364 * 179.97438 * 9 8 6 11 11 N 1.46895 * 109.47306 * 179.97438 * 10 9 8 12 12 C 1.46899 * 111.00323 * 66.04850 * 11 10 9 13 13 C 1.46901 * 110.99986 * 189.99897 * 11 10 9 14 14 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 15 15 C 1.54328 * 107.27043 * 358.94013 * 14 5 4 16 16 H 1.09000 * 110.71672 * 96.34629 * 15 14 5 17 17 C 1.52992 * 110.72106 * 219.44112 * 15 14 5 18 18 C 1.52997 * 109.47482 * 293.55011 * 17 15 14 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46968 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47299 * 119.99957 * 24 22 20 27 27 H 1.48495 * 109.47075 * 240.00117 * 24 22 20 28 28 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 29 29 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 30 30 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 31 31 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 32 32 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 33 33 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 34 34 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 35 35 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 36 36 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 37 37 H 1.09002 * 109.46799 * 300.00090 * 10 9 8 38 38 H 1.09006 * 109.47117 * 59.99432 * 10 9 8 39 39 H 1.09006 * 109.47272 * 59.99577 * 12 11 10 40 40 H 1.08993 * 109.47732 * 180.02562 * 12 11 10 41 41 H 1.09003 * 109.46830 * 300.00266 * 12 11 10 42 42 H 1.09005 * 109.47238 * 60.00109 * 13 11 10 43 43 H 1.09000 * 109.47045 * 180.02562 * 13 11 10 44 44 H 1.08996 * 109.47201 * 300.00219 * 13 11 10 45 45 H 1.08996 * 109.87920 * 239.53158 * 14 5 4 46 46 H 1.08996 * 109.88311 * 118.35693 * 14 5 4 47 47 H 1.09002 * 109.47103 * 173.54764 * 17 15 14 48 48 H 1.08998 * 109.46862 * 53.55576 * 17 15 14 49 49 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 50 50 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 51 51 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 52 52 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3805 -1.8175 -5.2988 11 7 6.6290 -2.2112 -5.9653 12 6 6.9314 -3.6281 -5.7223 13 6 6.5701 -1.9250 -7.4050 14 6 3.4675 -1.2741 0.6961 15 6 2.0862 -0.8078 1.2023 16 1 1.4479 -1.6632 1.4239 17 6 2.2349 0.0876 2.4338 18 6 2.7848 -0.7361 3.6000 19 7 2.9278 0.1215 4.7791 20 6 3.4053 -0.4004 5.9516 21 1 3.6768 -1.4443 6.0069 22 6 3.5402 0.4120 7.0689 23 7 3.2088 1.6840 7.0016 24 14 4.1923 -0.2999 8.6682 25 1 4.4906 -1.7427 8.4825 26 1 5.4336 0.4154 9.0587 27 1 3.1715 -0.1382 9.7345 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5731 -0.8530 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1560 -0.1720 -2.0836 32 1 1.4526 -1.6704 -1.4043 33 1 3.4638 -2.1576 -3.3913 34 1 4.0093 -0.4633 -3.3704 35 1 6.3678 -1.2223 -3.4787 36 1 5.8217 -2.9163 -3.4994 37 1 4.5785 -2.4906 -5.6018 38 1 5.1243 -0.7964 -5.5818 39 1 6.1195 -4.2443 -6.1087 40 1 7.8607 -3.8930 -6.2265 41 1 7.0384 -3.7981 -4.6510 42 1 6.4146 -0.8568 -7.5570 43 1 7.5067 -2.2265 -7.8739 44 1 5.7452 -2.4795 -7.8522 45 1 4.2426 -0.5996 1.0600 46 1 3.6651 -2.2893 1.0402 47 1 1.2618 0.4969 2.7051 48 1 2.9222 0.9032 2.2091 49 1 3.7579 -1.1454 3.3287 50 1 2.0974 -1.5517 3.8246 51 1 2.6835 1.0589 4.7294 52 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104599925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:18 Heat of formation + Delta-G solvation = -38.105856 kcal Electronic energy + Delta-G solvation = -25787.012410 eV Core-core repulsion = 22207.024752 eV Total energy + Delta-G solvation = -3579.987658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32240 -38.45728 -37.74859 -35.12624 -33.59473 -33.17750 -32.05621 -30.24709 -28.36887 -27.94301 -26.69337 -26.50543 -24.35404 -23.21163 -22.35960 -21.13253 -20.71867 -20.04130 -19.25766 -17.18355 -16.97367 -16.56846 -16.26268 -15.72969 -15.33939 -15.01876 -14.68578 -14.62237 -14.38243 -14.06434 -13.79371 -13.30234 -13.23700 -13.06011 -12.82207 -12.73159 -12.67462 -12.54639 -12.38610 -12.10458 -12.03278 -11.78044 -11.71114 -11.55108 -11.43535 -11.13967 -11.02537 -10.89851 -10.83342 -10.59872 -10.42452 -10.25634 -9.92634 -9.86288 -9.63861 -8.84058 -8.75540 -8.69742 -6.88318 -5.73372 -3.01761 2.57673 2.85888 3.46064 3.51737 3.54045 3.57369 4.23469 4.34028 4.54638 4.57068 4.66756 4.68046 4.74397 4.79570 4.94954 5.00968 5.06301 5.12518 5.15090 5.20912 5.24524 5.29500 5.30648 5.32998 5.34469 5.45845 5.49700 5.55164 5.59112 5.61526 5.72625 5.79427 5.85362 5.90259 6.01082 6.01665 6.03981 6.12777 6.18846 6.31849 6.40306 6.41686 6.61935 6.64360 6.86985 6.91420 7.45000 7.74180 8.11149 8.45844 9.56874 10.15301 10.49765 11.49732 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.002126 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.473066 B =13167.173731 C =14283.974217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.087 0.913 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.524 3.476 7 O -0.538 6.538 8 C -0.133 4.133 9 C -0.103 4.103 10 C 0.055 3.945 11 N -0.548 5.548 12 C 0.020 3.980 13 C 0.024 3.976 14 C 0.111 3.889 15 C -0.089 4.089 16 H 0.085 0.915 17 C -0.115 4.115 18 C 0.151 3.849 19 N -0.734 5.734 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.024 0.976 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.019 0.981 50 H 0.017 0.983 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -6.354 -30.102 30.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.355 5.355 6 C 0.313 3.687 7 O -0.414 6.414 8 C -0.174 4.174 9 C -0.141 4.141 10 C -0.073 4.073 11 N -0.272 5.272 12 C -0.129 4.129 13 C -0.124 4.124 14 C -0.012 4.012 15 C -0.108 4.108 16 H 0.104 0.896 17 C -0.153 4.153 18 C 0.023 3.977 19 N -0.378 5.378 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.037 0.963 50 H 0.035 0.965 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.054 -6.424 -29.595 30.354 hybrid contribution -0.482 -0.493 0.584 0.903 sum -2.536 -6.917 -29.012 29.932 Atomic orbital electron populations 1.21697 0.93607 1.02063 1.02421 1.22434 0.96296 0.99594 0.93794 0.89439 1.22439 0.83361 0.98222 0.97965 1.48582 1.12359 1.67087 1.07446 1.20327 0.82720 0.77006 0.88649 1.90736 1.25845 1.47139 1.77729 1.21594 1.00361 1.03824 0.91616 1.21350 0.96610 1.03449 0.92673 1.22167 0.89899 1.00701 0.94545 1.61935 1.34291 1.19880 1.11064 1.22467 1.00327 0.87279 1.02777 1.22386 1.00891 1.01507 0.87614 1.22113 0.98294 1.02046 0.78698 1.22282 0.95064 0.98767 0.94737 0.89623 1.21726 1.01870 0.98102 0.93587 1.20687 0.96996 0.93268 0.86715 1.42369 1.78547 1.09610 1.07280 1.19295 1.34707 0.94500 0.88353 0.91138 1.24743 1.02429 0.95767 0.98231 1.69669 1.54620 1.04550 1.29501 0.86112 0.78173 0.78052 0.83860 1.20548 1.21868 1.21886 0.91549 0.92528 0.92417 0.90782 0.91271 0.89231 0.88930 0.90128 0.91053 0.94826 0.90677 0.95711 0.91421 0.90689 0.91309 0.91333 0.95771 0.90733 0.91351 0.91326 0.91700 0.96286 0.96466 0.78346 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.31 37.16 0.35 -0.75 16 2 C -0.10 -0.95 3.09 -88.47 -0.27 -1.23 16 3 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 4 C 0.10 0.86 6.16 -2.52 -0.02 0.84 16 5 N -0.62 -7.33 3.33 -170.51 -0.57 -7.90 16 6 C 0.52 6.69 7.85 -10.99 -0.09 6.60 16 7 O -0.54 -9.25 16.31 5.56 0.09 -9.16 16 8 C -0.13 -1.10 4.71 -27.88 -0.13 -1.23 16 9 C -0.10 -0.93 4.43 -26.73 -0.12 -1.05 16 10 C 0.05 0.40 4.96 -3.83 -0.02 0.38 16 11 N -0.55 -4.46 5.02 -251.26 -1.26 -5.72 16 12 C 0.02 0.14 9.32 60.06 0.56 0.70 16 13 C 0.02 0.15 9.57 60.07 0.57 0.72 16 14 C 0.11 1.51 5.61 -3.06 -0.02 1.50 16 15 C -0.09 -1.07 2.45 -88.79 -0.22 -1.29 16 16 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 17 C -0.11 -1.78 4.71 -26.74 -0.13 -1.90 16 18 C 0.15 3.06 6.11 -4.04 -0.02 3.03 16 19 N -0.73 -19.07 5.60 -59.91 -0.34 -19.40 16 20 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 21 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 24 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.47 7.48 -51.93 -0.39 0.08 16 32 H 0.07 0.50 7.99 -51.92 -0.41 0.08 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.60 7.85 -51.93 -0.41 0.19 16 35 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 0.73 6.51 -51.93 -0.34 0.39 16 37 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 38 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 39 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 41 H 0.07 0.60 6.47 -51.93 -0.34 0.27 16 42 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 43 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 49 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 52 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -34.31 409.31 -10.12 -44.42 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -10.12 Total: 2.96 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.21 Total: -1.22 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -1.44 Total: -61.07 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.31 -10.12 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104599925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.318 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds