Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47364 * 179.97438 * 9 8 6 11 11 N 1.46895 * 109.47306 * 179.97438 * 10 9 8 12 12 C 1.46899 * 111.00323 * 66.04850 * 11 10 9 13 13 C 1.46901 * 110.99986 * 189.99897 * 11 10 9 14 14 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 15 15 C 1.54328 * 107.27043 * 358.94013 * 14 5 4 16 16 H 1.09000 * 110.71672 * 96.34629 * 15 14 5 17 17 C 1.52992 * 110.72106 * 219.44112 * 15 14 5 18 18 C 1.52997 * 109.47482 * 293.55011 * 17 15 14 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46968 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47299 * 119.99957 * 24 22 20 27 27 H 1.48495 * 109.47075 * 240.00117 * 24 22 20 28 28 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 29 29 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 30 30 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 31 31 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 32 32 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 33 33 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 34 34 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 35 35 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 36 36 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 37 37 H 1.09002 * 109.46799 * 300.00090 * 10 9 8 38 38 H 1.09006 * 109.47117 * 59.99432 * 10 9 8 39 39 H 1.09006 * 109.47272 * 59.99577 * 12 11 10 40 40 H 1.08993 * 109.47732 * 180.02562 * 12 11 10 41 41 H 1.09003 * 109.46830 * 300.00266 * 12 11 10 42 42 H 1.09005 * 109.47238 * 60.00109 * 13 11 10 43 43 H 1.09000 * 109.47045 * 180.02562 * 13 11 10 44 44 H 1.08996 * 109.47201 * 300.00219 * 13 11 10 45 45 H 1.08996 * 109.87920 * 239.53158 * 14 5 4 46 46 H 1.08996 * 109.88311 * 118.35693 * 14 5 4 47 47 H 1.09002 * 109.47103 * 173.54764 * 17 15 14 48 48 H 1.08998 * 109.46862 * 53.55576 * 17 15 14 49 49 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 50 50 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 51 51 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 52 52 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3805 -1.8175 -5.2988 11 7 6.6290 -2.2112 -5.9653 12 6 6.9314 -3.6281 -5.7223 13 6 6.5701 -1.9250 -7.4050 14 6 3.4675 -1.2741 0.6961 15 6 2.0862 -0.8078 1.2023 16 1 1.4479 -1.6632 1.4239 17 6 2.2349 0.0876 2.4338 18 6 2.7848 -0.7361 3.6000 19 7 2.9278 0.1215 4.7791 20 6 3.4053 -0.4004 5.9516 21 1 3.6768 -1.4443 6.0069 22 6 3.5402 0.4120 7.0689 23 7 3.2088 1.6840 7.0016 24 14 4.1923 -0.2999 8.6682 25 1 4.4906 -1.7427 8.4825 26 1 5.4336 0.4154 9.0587 27 1 3.1715 -0.1382 9.7345 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5731 -0.8530 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1560 -0.1720 -2.0836 32 1 1.4526 -1.6704 -1.4043 33 1 3.4638 -2.1576 -3.3913 34 1 4.0093 -0.4633 -3.3704 35 1 6.3678 -1.2223 -3.4787 36 1 5.8217 -2.9163 -3.4994 37 1 4.5785 -2.4906 -5.6018 38 1 5.1243 -0.7964 -5.5818 39 1 6.1195 -4.2443 -6.1087 40 1 7.8607 -3.8930 -6.2265 41 1 7.0384 -3.7981 -4.6510 42 1 6.4146 -0.8568 -7.5570 43 1 7.5067 -2.2265 -7.8739 44 1 5.7452 -2.4795 -7.8522 45 1 4.2426 -0.5996 1.0600 46 1 3.6651 -2.2893 1.0402 47 1 1.2618 0.4969 2.7051 48 1 2.9222 0.9032 2.2091 49 1 3.7579 -1.1454 3.3287 50 1 2.0974 -1.5517 3.8246 51 1 2.6835 1.0589 4.7294 52 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104599925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -61.502143 kcal Electronic energy + Delta-G solvation = -25788.026949 eV Core-core repulsion = 22207.024752 eV Total energy + Delta-G solvation = -3581.002197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28200 -39.35936 -38.46185 -36.88100 -34.72119 -34.14367 -33.43510 -31.81370 -29.39018 -28.48242 -27.85035 -27.20045 -25.90290 -24.31689 -23.62542 -21.99416 -21.71474 -21.02846 -20.17262 -19.17984 -17.96636 -17.52615 -17.02259 -16.67923 -16.41884 -16.10067 -15.75370 -15.50831 -15.47631 -15.34527 -15.07656 -14.85374 -14.36790 -14.24583 -13.80465 -13.59630 -13.33721 -13.28117 -13.15868 -13.09691 -12.89523 -12.78600 -12.63730 -12.59662 -12.50005 -12.33920 -12.27392 -12.21102 -12.08454 -11.92224 -11.64797 -11.57351 -11.53281 -11.18557 -10.96255 -10.90039 -9.68571 -9.29070 -9.03229 -7.98524 -5.27709 1.44719 1.46133 1.56287 1.61664 1.96593 2.53355 3.03322 3.34796 3.39132 3.54068 3.66281 3.76518 3.96811 4.07932 4.13203 4.23035 4.25990 4.32789 4.39052 4.43333 4.48519 4.51495 4.53086 4.57107 4.65401 4.66603 4.69005 4.73293 4.75321 4.77854 4.79560 4.90185 4.94317 5.01579 5.03464 5.03998 5.16358 5.19374 5.23848 5.28905 5.33839 5.37515 5.42465 5.46874 5.56038 6.08246 6.13269 6.24546 6.54283 7.14770 7.30287 8.06241 8.29833 9.25193 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.002126 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.473066 B =13167.173731 C =14283.974217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.082 0.918 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.514 3.486 7 O -0.596 6.596 8 C -0.120 4.120 9 C -0.097 4.097 10 C 0.061 3.939 11 N -0.571 5.571 12 C 0.021 3.979 13 C 0.025 3.975 14 C 0.111 3.889 15 C -0.079 4.079 16 H 0.097 0.903 17 C -0.100 4.100 18 C 0.149 3.851 19 N -0.748 5.748 20 C -0.249 4.249 21 H 0.073 0.927 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.975 3.025 25 H -0.268 1.268 26 H -0.293 1.293 27 H -0.288 1.288 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.032 0.968 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.010 0.990 50 H 0.022 0.978 51 H 0.374 0.626 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -6.805 -32.447 33.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.018 4.018 5 N -0.353 5.353 6 C 0.305 3.695 7 O -0.477 6.477 8 C -0.160 4.160 9 C -0.136 4.136 10 C -0.067 4.067 11 N -0.295 5.295 12 C -0.127 4.127 13 C -0.123 4.123 14 C -0.013 4.013 15 C -0.099 4.099 16 H 0.115 0.885 17 C -0.138 4.138 18 C 0.023 3.977 19 N -0.390 5.390 20 C -0.381 4.381 21 H 0.091 0.909 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.803 3.197 25 H -0.193 1.193 26 H -0.220 1.220 27 H -0.215 1.215 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.028 0.972 50 H 0.040 0.960 51 H 0.206 0.794 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.026 -6.894 -31.985 32.967 hybrid contribution 0.149 -0.373 1.293 1.354 sum -3.877 -7.268 -30.692 31.778 Atomic orbital electron populations 1.21680 0.91833 1.03052 1.02794 1.22416 0.97598 0.98923 0.92474 0.89978 1.22723 0.81319 0.99468 0.98340 1.48707 1.13802 1.66452 1.06349 1.21265 0.81883 0.75756 0.90577 1.90709 1.28226 1.49802 1.78982 1.21611 1.00629 1.06189 0.87573 1.21255 0.96378 1.01590 0.94368 1.22118 0.90002 1.01807 0.92752 1.61924 1.35064 1.20153 1.12398 1.22430 1.00938 0.87396 1.01934 1.22409 1.01408 1.02030 0.86428 1.21933 0.98398 1.00304 0.80644 1.22177 0.94424 0.98933 0.94346 0.88505 1.21560 1.01337 0.97668 0.93236 1.20861 0.96808 0.93439 0.86636 1.42600 1.78382 1.09811 1.08246 1.19680 1.34144 0.94709 0.89560 0.90949 1.25597 1.03335 0.96234 1.01669 1.69817 1.56040 1.05765 1.30283 0.85054 0.77222 0.77837 0.79537 1.19252 1.21968 1.21514 0.92773 0.90360 0.91386 0.87581 0.88950 0.86145 0.86150 0.92983 0.92930 0.93428 0.89343 0.94920 0.90923 0.92151 0.90692 0.91061 0.94982 0.93928 0.92997 0.90742 0.92785 0.97240 0.95976 0.79383 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.31 71.98 0.67 -0.96 16 2 C -0.10 -1.52 3.09 -9.40 -0.03 -1.55 16 3 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 4 C 0.10 1.32 6.16 86.86 0.53 1.86 16 5 N -0.62 -13.91 3.33 -811.77 -2.70 -16.61 16 6 C 0.51 12.87 7.85 87.66 0.69 13.56 16 7 O -0.60 -21.55 16.31 -3.03 -0.05 -21.60 16 8 C -0.12 -1.68 4.71 29.85 0.14 -1.54 16 9 C -0.10 -1.71 4.43 30.59 0.14 -1.57 16 10 C 0.06 0.76 4.96 86.30 0.43 1.19 16 11 N -0.57 -8.60 5.02 -948.85 -4.76 -13.37 16 12 C 0.02 0.30 9.32 127.69 1.19 1.49 16 13 C 0.03 0.26 9.57 127.69 1.22 1.48 16 14 C 0.11 3.09 5.61 86.73 0.49 3.58 16 15 C -0.08 -1.84 2.45 -9.61 -0.02 -1.87 16 16 H 0.10 2.08 8.04 -2.39 -0.02 2.06 16 17 C -0.10 -3.11 4.71 30.59 0.14 -2.97 16 18 C 0.15 6.17 6.11 86.38 0.53 6.70 16 19 N -0.75 -39.77 5.60 -343.45 -1.92 -41.69 16 20 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 21 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 23 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 24 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 31 H 0.11 0.78 7.48 -2.39 -0.02 0.76 16 32 H 0.09 0.86 7.99 -2.38 -0.02 0.84 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.12 1.07 7.85 -2.39 -0.02 1.05 16 35 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.05 1.10 6.51 -2.38 -0.02 1.09 16 37 H 0.05 0.48 8.12 -2.39 -0.02 0.46 16 38 H 0.09 0.87 8.06 -2.38 -0.02 0.85 16 39 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 41 H 0.06 1.01 6.47 -2.39 -0.02 1.00 16 42 H 0.07 0.68 8.12 -2.38 -0.02 0.66 16 43 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 44 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.04 1.44 7.76 -2.39 -0.02 1.43 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.05 1.79 8.06 -2.39 -0.02 1.77 16 49 H 0.01 0.42 7.49 -2.39 -0.02 0.40 16 50 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 52 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.61 409.31 0.44 -77.17 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.14 Total: 25.25 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 7.42 Total: 1.62 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -9.10 Total: -132.02 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -77.61 0.44 -77.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104599925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.667 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds