Wall clock time and date at job start Fri Apr 10 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47373 * 2 1 4 4 N 1.46901 * 109.46933 * 120.00183 * 2 1 3 5 5 C 1.46905 * 111.00053 * 183.94799 * 4 2 1 6 6 C 1.46905 * 110.99900 * 59.99742 * 4 2 1 7 7 C 1.50701 * 109.46891 * 189.99755 * 6 4 2 8 8 O 1.21281 * 120.00382 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00149 * 180.02562 * 7 6 4 10 10 C 1.47431 * 125.64341 * 0.03974 * 9 7 6 11 11 C 1.54912 * 104.82949 * 204.09147 * 10 9 7 12 12 H 1.09000 * 111.00254 * 81.07017 * 11 10 9 13 13 C 1.53004 * 111.00695 * 204.91801 * 11 10 9 14 14 C 1.55156 * 101.58604 * 322.99608 * 11 10 9 15 15 H 1.09000 * 110.86864 * 277.06858 * 14 11 10 16 16 C 1.52992 * 110.72497 * 153.86469 * 14 11 10 17 17 C 1.52997 * 109.47482 * 180.02562 * 16 14 11 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.36936 * 119.99992 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00265 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46968 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47299 * 119.99957 * 23 21 19 26 26 H 1.48495 * 109.47075 * 240.00117 * 23 21 19 27 27 C 1.47023 * 125.65069 * 180.02562 * 9 7 6 28 28 H 1.09003 * 109.47163 * 300.00161 * 1 2 3 29 29 H 1.09002 * 109.47338 * 59.99609 * 1 2 3 30 30 H 1.09000 * 109.47522 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47163 * 239.99839 * 2 1 3 32 32 H 1.09005 * 109.46933 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47211 * 299.99936 * 3 2 1 34 34 H 1.09002 * 109.46973 * 60.00580 * 3 2 1 35 35 H 1.08998 * 109.47089 * 296.04784 * 5 4 2 36 36 H 1.09006 * 109.46567 * 56.04579 * 5 4 2 37 37 H 1.08990 * 109.47225 * 176.04346 * 5 4 2 38 38 H 1.08998 * 109.47002 * 70.00129 * 6 4 2 39 39 H 1.08998 * 109.47080 * 309.99514 * 6 4 2 40 40 H 1.08992 * 110.37314 * 322.93281 * 10 9 7 41 41 H 1.09008 * 110.36286 * 85.14824 * 10 9 7 42 42 H 1.08997 * 109.47132 * 172.19914 * 13 11 10 43 43 H 1.09005 * 109.47105 * 292.20409 * 13 11 10 44 44 H 1.09001 * 109.46710 * 52.19730 * 13 11 10 45 45 H 1.09002 * 109.47103 * 60.02094 * 16 14 11 46 46 H 1.08998 * 109.46862 * 300.02906 * 16 14 11 47 47 H 1.09002 * 109.47153 * 59.99783 * 17 16 14 48 48 H 1.09001 * 109.46832 * 299.99974 * 17 16 14 49 49 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 50 50 H 0.97001 * 120.00803 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.87920 * 59.56468 * 27 9 7 52 52 H 1.08996 * 109.88311 * 298.39002 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4851 -0.6309 1.2816 6 6 1.5485 -2.0836 1.2333 7 6 1.8578 -2.6860 2.5796 8 8 2.4162 -2.0222 3.4272 9 7 1.5149 -3.9628 2.8414 10 6 0.8371 -4.8793 1.9065 11 6 0.1347 -5.9216 2.8122 12 1 -0.8078 -5.5325 3.1972 13 6 -0.0827 -7.2392 2.0655 14 6 1.1727 -6.0933 3.9525 15 1 1.9511 -6.8004 3.6658 16 6 0.4877 -6.5402 5.2454 17 6 1.5354 -6.6999 6.3489 18 7 0.8792 -7.1273 7.5871 19 6 1.6218 -7.3365 8.7185 20 1 2.6911 -7.1860 8.6981 21 6 1.0002 -7.7419 9.8915 22 7 -0.3028 -7.9259 9.9162 23 14 2.0130 -8.0266 11.4351 24 1 3.4436 -7.7524 11.1461 25 1 1.5427 -7.1170 12.5106 26 1 1.8579 -9.4361 11.8759 27 6 1.7551 -4.6724 4.1065 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8901 35 1 3.9191 -1.1676 0.4380 36 1 3.8070 0.4102 1.2544 37 1 3.8163 -1.0894 2.2132 38 1 2.0517 -2.6567 0.4546 39 1 0.4721 -2.1069 1.0635 40 1 0.1023 -4.3383 1.3105 41 1 1.5654 -5.3670 1.2584 42 1 -0.4489 -7.9946 2.7606 43 1 -0.8147 -7.0904 1.2716 44 1 0.8608 -7.5711 1.6321 45 1 -0.0140 -7.4937 5.0800 46 1 -0.2452 -5.7915 5.5458 47 1 2.0370 -5.7464 6.5144 48 1 2.2683 -7.4487 6.0485 49 1 -0.0810 -7.2628 7.6053 50 1 -0.7372 -8.2096 10.7358 51 1 1.2544 -4.1531 4.9236 52 1 2.8259 -4.7300 4.3017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105064254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:27 Heat of formation + Delta-G solvation = -23.575868 kcal Electronic energy + Delta-G solvation = -26489.157716 eV Core-core repulsion = 22909.800126 eV Total energy + Delta-G solvation = -3579.357590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42140 -38.82952 -37.41990 -35.12245 -33.30400 -32.41776 -32.04425 -30.35006 -29.40100 -27.53213 -26.57286 -26.16531 -24.86869 -23.81870 -22.41099 -20.73817 -20.45688 -19.99030 -19.29372 -17.36582 -17.01973 -16.69101 -16.09077 -15.65411 -15.19766 -14.76992 -14.67297 -14.44062 -14.32926 -13.79768 -13.58438 -13.29422 -13.25486 -13.06343 -12.88295 -12.73881 -12.66750 -12.57741 -12.24483 -12.17523 -12.08074 -11.77442 -11.58739 -11.43856 -11.37543 -11.15272 -11.02208 -10.97239 -10.83130 -10.59542 -10.42224 -10.25365 -9.92295 -9.77142 -9.63542 -8.83787 -8.70612 -8.55303 -6.88072 -5.73094 -3.01479 2.58732 2.75674 3.46280 3.51921 3.54246 3.63680 4.25989 4.33906 4.51584 4.55539 4.60353 4.68972 4.72549 4.90865 4.92261 4.96704 5.11887 5.22538 5.23881 5.26420 5.28512 5.33010 5.33492 5.45655 5.46775 5.49739 5.55062 5.58198 5.61674 5.72709 5.78903 5.80482 5.89436 5.90155 5.99959 6.01441 6.02126 6.12403 6.18246 6.31921 6.40263 6.42135 6.66513 6.79685 6.87366 6.91884 7.46245 7.74388 8.16345 8.46164 9.57148 10.15601 10.50030 11.50048 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002422 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.620384 B =11557.380322 C =12495.786417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.147 4.147 4 N -0.520 5.520 5 C 0.014 3.986 6 C 0.037 3.963 7 C 0.526 3.474 8 O -0.520 6.520 9 N -0.621 5.621 10 C 0.103 3.897 11 C -0.101 4.101 12 H 0.088 0.912 13 C -0.140 4.140 14 C -0.089 4.089 15 H 0.085 0.915 16 C -0.115 4.115 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.113 3.887 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.018 0.982 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.019 0.981 48 H 0.017 0.983 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.075 0.925 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 11.488 -27.519 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 C -0.205 4.205 4 N -0.245 5.245 5 C -0.133 4.133 6 C -0.093 4.093 7 C 0.314 3.686 8 O -0.395 6.395 9 N -0.357 5.357 10 C -0.020 4.020 11 C -0.121 4.121 12 H 0.106 0.894 13 C -0.198 4.198 14 C -0.108 4.108 15 H 0.104 0.896 16 C -0.153 4.153 17 C 0.024 3.976 18 N -0.378 5.378 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.009 4.009 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.217 0.783 50 H 0.064 0.936 51 H 0.093 0.907 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.392 12.198 -26.555 29.255 hybrid contribution 0.485 -0.748 0.177 0.908 sum 1.876 11.451 -26.377 28.817 Atomic orbital electron populations 1.21936 0.94225 1.01956 1.02565 1.21663 0.95830 0.95302 0.90419 1.21909 1.01217 0.94955 1.02381 1.61709 1.11473 1.12470 1.38876 1.22637 0.86262 1.02470 1.01946 1.22020 1.02725 0.90030 0.94573 1.20133 0.78967 0.79879 0.89622 1.90696 1.41314 1.59463 1.48034 1.48557 1.59722 1.11280 1.16100 1.22439 0.95822 0.91271 0.92518 1.22430 0.98950 0.95365 0.95310 0.89403 1.21699 1.01747 0.96236 1.00114 1.22280 0.97508 0.95362 0.95678 0.89626 1.21726 0.98865 1.01581 0.93111 1.20685 0.93776 0.96805 0.86379 1.42374 1.07512 1.81799 1.06144 1.19289 0.91526 1.37629 0.88342 0.91149 1.24746 0.95783 1.02631 0.98050 1.69669 1.07766 1.53785 1.27144 0.86111 0.79162 0.77379 0.83545 1.20547 1.21857 1.21896 1.22099 1.01085 0.91828 0.85907 0.91410 0.92019 0.92646 0.94303 0.92332 0.92138 0.91484 0.96338 0.90888 0.89263 0.92236 0.87624 0.90957 0.91320 0.91530 0.92538 0.92428 0.91330 0.91680 0.96277 0.96481 0.78342 0.93609 0.90700 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.99 37.16 0.33 -0.67 16 2 C 0.08 0.59 2.68 -67.71 -0.18 0.40 16 3 C -0.15 -1.02 8.84 37.15 0.33 -0.69 16 4 N -0.52 -5.36 4.37 -236.33 -1.03 -6.40 16 5 C 0.01 0.15 8.84 60.07 0.53 0.68 16 6 C 0.04 0.36 4.27 -4.97 -0.02 0.34 16 7 C 0.53 6.94 7.57 -10.99 -0.08 6.86 16 8 O -0.52 -9.00 14.64 5.56 0.08 -8.92 16 9 N -0.62 -7.41 3.33 -170.51 -0.57 -7.98 16 10 C 0.10 0.87 6.16 -2.52 -0.02 0.85 16 11 C -0.10 -0.95 3.09 -88.47 -0.27 -1.22 16 12 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 13 C -0.14 -1.09 9.31 37.16 0.35 -0.75 16 14 C -0.09 -1.07 2.45 -88.79 -0.22 -1.29 16 15 H 0.09 0.99 8.04 -51.93 -0.42 0.58 16 16 C -0.11 -1.77 4.71 -26.74 -0.13 -1.90 16 17 C 0.15 3.06 6.11 -4.04 -0.02 3.03 16 18 N -0.73 -19.08 5.60 -59.91 -0.34 -19.42 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 23 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 C 0.11 1.54 5.61 -3.06 -0.02 1.52 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.34 6.20 -51.93 -0.32 0.02 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.40 6.26 -51.93 -0.32 0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.66 6.01 -51.93 -0.31 0.35 16 37 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 38 H 0.06 0.48 8.12 -51.93 -0.42 0.05 16 39 H 0.11 0.85 5.54 -51.93 -0.29 0.56 16 40 H 0.07 0.48 7.48 -51.93 -0.39 0.09 16 41 H 0.07 0.50 7.99 -51.92 -0.41 0.09 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 47 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.38 10.38 7.67 -40.82 -0.31 10.06 16 50 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.07 1.19 7.76 -51.93 -0.40 0.78 16 52 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -33.93 400.30 -9.54 -43.47 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -9.75 Total: 3.78 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 0.33 Total: -0.38 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -1.21 Total: -61.89 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.93 -9.54 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105064254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.890 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds