Wall clock time and date at job start Fri Apr 10 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47373 * 2 1 4 4 N 1.46901 * 109.46933 * 120.00183 * 2 1 3 5 5 C 1.46905 * 111.00053 * 183.94799 * 4 2 1 6 6 C 1.46905 * 110.99900 * 59.99742 * 4 2 1 7 7 C 1.50701 * 109.46891 * 189.99755 * 6 4 2 8 8 O 1.21281 * 120.00382 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00149 * 180.02562 * 7 6 4 10 10 C 1.47431 * 125.64341 * 0.03974 * 9 7 6 11 11 C 1.54912 * 104.82949 * 204.09147 * 10 9 7 12 12 H 1.09000 * 111.00254 * 81.07017 * 11 10 9 13 13 C 1.53004 * 111.00695 * 204.91801 * 11 10 9 14 14 C 1.55156 * 101.58604 * 322.99608 * 11 10 9 15 15 H 1.09000 * 110.86864 * 277.06858 * 14 11 10 16 16 C 1.52992 * 110.72497 * 153.86469 * 14 11 10 17 17 C 1.52997 * 109.47482 * 180.02562 * 16 14 11 18 18 N 1.46505 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.36936 * 119.99992 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00265 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46968 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47299 * 119.99957 * 23 21 19 26 26 H 1.48495 * 109.47075 * 240.00117 * 23 21 19 27 27 C 1.47023 * 125.65069 * 180.02562 * 9 7 6 28 28 H 1.09003 * 109.47163 * 300.00161 * 1 2 3 29 29 H 1.09002 * 109.47338 * 59.99609 * 1 2 3 30 30 H 1.09000 * 109.47522 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47163 * 239.99839 * 2 1 3 32 32 H 1.09005 * 109.46933 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47211 * 299.99936 * 3 2 1 34 34 H 1.09002 * 109.46973 * 60.00580 * 3 2 1 35 35 H 1.08998 * 109.47089 * 296.04784 * 5 4 2 36 36 H 1.09006 * 109.46567 * 56.04579 * 5 4 2 37 37 H 1.08990 * 109.47225 * 176.04346 * 5 4 2 38 38 H 1.08998 * 109.47002 * 70.00129 * 6 4 2 39 39 H 1.08998 * 109.47080 * 309.99514 * 6 4 2 40 40 H 1.08992 * 110.37314 * 322.93281 * 10 9 7 41 41 H 1.09008 * 110.36286 * 85.14824 * 10 9 7 42 42 H 1.08997 * 109.47132 * 172.19914 * 13 11 10 43 43 H 1.09005 * 109.47105 * 292.20409 * 13 11 10 44 44 H 1.09001 * 109.46710 * 52.19730 * 13 11 10 45 45 H 1.09002 * 109.47103 * 60.02094 * 16 14 11 46 46 H 1.08998 * 109.46862 * 300.02906 * 16 14 11 47 47 H 1.09002 * 109.47153 * 59.99783 * 17 16 14 48 48 H 1.09001 * 109.46832 * 299.99974 * 17 16 14 49 49 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 50 50 H 0.97001 * 120.00803 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.87920 * 59.56468 * 27 9 7 52 52 H 1.08996 * 109.88311 * 298.39002 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4851 -0.6309 1.2816 6 6 1.5485 -2.0836 1.2333 7 6 1.8578 -2.6860 2.5796 8 8 2.4162 -2.0222 3.4272 9 7 1.5149 -3.9628 2.8414 10 6 0.8371 -4.8793 1.9065 11 6 0.1347 -5.9216 2.8122 12 1 -0.8078 -5.5325 3.1972 13 6 -0.0827 -7.2392 2.0655 14 6 1.1727 -6.0933 3.9525 15 1 1.9511 -6.8004 3.6658 16 6 0.4877 -6.5402 5.2454 17 6 1.5354 -6.6999 6.3489 18 7 0.8792 -7.1273 7.5871 19 6 1.6218 -7.3365 8.7185 20 1 2.6911 -7.1860 8.6981 21 6 1.0002 -7.7419 9.8915 22 7 -0.3028 -7.9259 9.9162 23 14 2.0130 -8.0266 11.4351 24 1 3.4436 -7.7524 11.1461 25 1 1.5427 -7.1170 12.5106 26 1 1.8579 -9.4361 11.8759 27 6 1.7551 -4.6724 4.1065 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8901 35 1 3.9191 -1.1676 0.4380 36 1 3.8070 0.4102 1.2544 37 1 3.8163 -1.0894 2.2132 38 1 2.0517 -2.6567 0.4546 39 1 0.4721 -2.1069 1.0635 40 1 0.1023 -4.3383 1.3105 41 1 1.5654 -5.3670 1.2584 42 1 -0.4489 -7.9946 2.7606 43 1 -0.8147 -7.0904 1.2716 44 1 0.8608 -7.5711 1.6321 45 1 -0.0140 -7.4937 5.0800 46 1 -0.2452 -5.7915 5.5458 47 1 2.0370 -5.7464 6.5144 48 1 2.2683 -7.4487 6.0485 49 1 -0.0810 -7.2628 7.6053 50 1 -0.7372 -8.2096 10.7358 51 1 1.2544 -4.1531 4.9236 52 1 2.8259 -4.7300 4.3017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105064254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:27 Heat of formation + Delta-G solvation = -46.498209 kcal Electronic energy + Delta-G solvation = -26490.151704 eV Core-core repulsion = 22909.800126 eV Total energy + Delta-G solvation = -3580.351578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36922 -39.68492 -38.32808 -36.87313 -34.66955 -33.45625 -33.06156 -31.84411 -30.30651 -28.66260 -27.40149 -27.00041 -25.98918 -25.17565 -23.90038 -22.00846 -21.17865 -20.88833 -20.21700 -19.17929 -18.17113 -17.59747 -16.97537 -16.69275 -16.46554 -15.97393 -15.77269 -15.48504 -15.41395 -15.11372 -15.04809 -14.41756 -14.36934 -14.27542 -13.76629 -13.63790 -13.44509 -13.25268 -13.15807 -13.05699 -12.90286 -12.84677 -12.71846 -12.63274 -12.50374 -12.38296 -12.24754 -12.08224 -11.96139 -11.92195 -11.66451 -11.54868 -11.54828 -11.19094 -10.95948 -10.79757 -9.68348 -9.26836 -9.03015 -7.98268 -5.27442 1.44860 1.46346 1.56470 1.60894 1.86369 2.53583 2.93907 3.35012 3.38027 3.53035 3.66361 3.78638 3.93877 4.05358 4.12386 4.21154 4.24803 4.26226 4.33768 4.42260 4.43205 4.50523 4.54851 4.56748 4.60489 4.65935 4.72479 4.78219 4.82275 4.89399 4.91627 4.93517 4.95040 5.02713 5.03716 5.09919 5.17843 5.26266 5.29044 5.31796 5.34485 5.41300 5.42448 5.47106 5.55722 5.95737 6.14665 6.24906 6.54815 7.18419 7.30545 8.06561 8.30042 9.25538 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002422 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.620384 B =11557.380322 C =12495.786417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.146 4.146 4 N -0.544 5.544 5 C 0.020 3.980 6 C 0.046 3.954 7 C 0.517 3.483 8 O -0.574 6.574 9 N -0.620 5.620 10 C 0.102 3.898 11 C -0.094 4.094 12 H 0.082 0.918 13 C -0.136 4.136 14 C -0.079 4.079 15 H 0.097 0.903 16 C -0.100 4.100 17 C 0.149 3.851 18 N -0.748 5.748 19 C -0.247 4.247 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.268 1.268 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.114 3.886 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.010 0.990 48 H 0.022 0.978 49 H 0.374 0.626 50 H 0.252 0.748 51 H 0.043 0.957 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 11.135 -30.525 32.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.204 4.204 4 N -0.270 5.270 5 C -0.127 4.127 6 C -0.084 4.084 7 C 0.307 3.693 8 O -0.452 6.452 9 N -0.355 5.355 10 C -0.019 4.019 11 C -0.113 4.113 12 H 0.101 0.899 13 C -0.194 4.194 14 C -0.098 4.098 15 H 0.115 0.885 16 C -0.138 4.138 17 C 0.023 3.977 18 N -0.391 5.391 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.804 3.196 24 H -0.192 1.192 25 H -0.219 1.219 26 H -0.215 1.215 27 C -0.009 4.009 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.028 0.972 48 H 0.040 0.960 49 H 0.206 0.794 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.307 11.835 -29.621 31.925 hybrid contribution 0.531 -0.599 1.089 1.351 sum 1.837 11.235 -28.532 30.720 Atomic orbital electron populations 1.21935 0.93433 1.02524 1.02593 1.21760 0.96425 0.95288 0.89729 1.21909 1.01178 0.94771 1.02496 1.61667 1.11328 1.13229 1.40783 1.22497 0.86803 1.02688 1.00760 1.22030 1.04090 0.89835 0.92452 1.20954 0.77960 0.79787 0.90597 1.90675 1.43747 1.60867 1.49958 1.48660 1.59401 1.11463 1.15945 1.22709 0.96708 0.90589 0.91908 1.22405 0.97731 0.96823 0.94333 0.89935 1.21681 1.02917 0.94571 1.00195 1.22172 0.98484 0.94163 0.95008 0.88474 1.21559 0.97417 1.01658 0.93154 1.20858 0.95008 0.95952 0.85888 1.42611 1.07188 1.81903 1.07390 1.19669 0.91927 1.36816 0.89521 0.90954 1.25604 0.96978 1.03123 1.01230 1.69817 1.09322 1.55044 1.27788 0.85053 0.78198 0.77034 0.79364 1.19233 1.21948 1.21541 1.21913 0.99832 0.92800 0.86380 0.93107 0.90274 0.91786 0.92887 0.92426 0.90321 0.93035 0.94896 0.90348 0.92538 0.89745 0.85606 0.87984 0.89082 0.92680 0.90408 0.91402 0.90734 0.92777 0.97205 0.95974 0.79383 0.93882 0.93891 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.99 71.98 0.65 -0.96 16 2 C 0.08 0.99 2.68 44.91 0.12 1.11 16 3 C -0.15 -1.80 8.84 71.98 0.64 -1.16 16 4 N -0.54 -10.57 4.37 -901.60 -3.94 -14.51 16 5 C 0.02 0.41 8.84 127.69 1.13 1.54 16 6 C 0.05 0.78 4.27 85.56 0.37 1.15 16 7 C 0.52 13.47 7.57 87.66 0.66 14.14 16 8 O -0.57 -20.81 14.64 -3.03 -0.04 -20.85 16 9 N -0.62 -14.21 3.33 -811.78 -2.70 -16.92 16 10 C 0.10 1.39 6.16 86.86 0.53 1.92 16 11 C -0.09 -1.52 3.09 -9.40 -0.03 -1.55 16 12 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 13 C -0.14 -1.66 9.31 71.98 0.67 -0.99 16 14 C -0.08 -1.83 2.45 -9.61 -0.02 -1.86 16 15 H 0.10 2.09 8.04 -2.39 -0.02 2.07 16 16 C -0.10 -3.11 4.71 30.59 0.14 -2.96 16 17 C 0.15 6.18 6.11 86.38 0.53 6.70 16 18 N -0.75 -39.81 5.60 -343.45 -1.92 -41.73 16 19 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 20 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 22 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 23 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 C 0.11 3.19 5.61 86.73 0.49 3.68 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.58 6.20 -2.39 -0.01 0.56 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.71 6.26 -2.38 -0.01 0.69 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 1.42 6.01 -2.38 -0.01 1.41 16 37 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 38 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 39 H 0.13 1.60 5.54 -2.39 -0.01 1.59 16 40 H 0.10 0.85 7.48 -2.39 -0.02 0.84 16 41 H 0.09 0.91 7.99 -2.38 -0.02 0.90 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 47 H 0.01 0.43 7.49 -2.39 -0.02 0.41 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.37 20.88 7.67 -92.71 -0.71 20.16 16 50 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 51 H 0.04 1.46 7.76 -2.39 -0.02 1.44 16 52 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -76.32 400.30 1.04 -75.27 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.16 Total: 26.60 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 7.18 Total: 3.00 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -8.28 Total: -133.63 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.04 Total: -20.85 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -76.32 1.04 -75.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105064254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.775 kcal (2) G-P(sol) polarization free energy of solvation -76.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds