Wall clock time and date at job start Fri Apr 10 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47140 * 120.00021 * 2 1 3 5 5 H 1.09004 * 109.47606 * 305.12321 * 4 2 1 6 6 C 1.50699 * 109.47108 * 65.11944 * 4 2 1 7 7 O 1.21290 * 119.99839 * 81.44066 * 6 4 2 8 8 N 1.34772 * 120.00578 * 261.43215 * 6 4 2 9 9 C 1.48120 * 127.03693 * 184.10595 * 8 6 4 10 10 C 1.54593 * 103.42292 * 219.29179 * 9 8 6 11 11 H 1.09004 * 110.57703 * 81.17269 * 10 9 8 12 12 C 1.53005 * 110.98819 * 204.37334 * 10 9 8 13 13 N 1.46493 * 109.47309 * 288.65578 * 12 10 9 14 14 C 1.36931 * 120.00176 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00252 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00236 * 179.97438 * 14 13 12 17 17 N 1.31612 * 119.99873 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00021 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47091 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47388 * 120.00007 * 18 16 14 21 21 H 1.48504 * 109.47023 * 239.99748 * 18 16 14 22 22 C 1.54618 * 102.91279 * 322.86932 * 10 9 8 23 23 H 1.09004 * 110.32522 * 262.80587 * 22 10 9 24 24 C 1.53006 * 110.41275 * 140.63632 * 22 10 9 25 25 C 1.47492 * 127.03033 * 4.43434 * 8 6 4 26 26 N 1.46897 * 109.47338 * 185.12511 * 4 2 1 27 27 C 1.46898 * 111.00358 * 179.97438 * 26 4 2 28 28 C 1.46903 * 110.99870 * 303.87573 * 26 4 2 29 29 H 1.08998 * 109.47116 * 64.23278 * 1 2 3 30 30 H 1.09000 * 109.47265 * 184.23469 * 1 2 3 31 31 H 1.08997 * 109.47299 * 304.23435 * 1 2 3 32 32 H 1.09002 * 109.47241 * 240.00338 * 2 1 3 33 33 H 1.08996 * 109.47152 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47182 * 300.00079 * 3 2 1 35 35 H 1.09002 * 109.46814 * 60.00076 * 3 2 1 36 36 H 1.08990 * 110.66102 * 337.77723 * 9 8 6 37 37 H 1.08996 * 110.65717 * 100.89454 * 9 8 6 38 38 H 1.09008 * 109.46781 * 48.65725 * 12 10 9 39 39 H 1.09005 * 109.46980 * 168.65076 * 12 10 9 40 40 H 0.96996 * 120.00011 * 359.97438 * 13 12 10 41 41 H 0.96996 * 120.00226 * 180.02562 * 17 16 14 42 42 H 1.08990 * 109.46785 * 302.87471 * 24 22 10 43 43 H 1.09000 * 109.46908 * 62.87895 * 24 22 10 44 44 H 1.09001 * 109.46580 * 182.87087 * 24 22 10 45 45 H 1.09006 * 109.90655 * 273.87022 * 25 8 6 46 46 H 1.08998 * 109.91409 * 34.95146 * 25 8 6 47 47 H 1.08996 * 109.47853 * 183.95385 * 27 26 4 48 48 H 1.08997 * 109.47604 * 63.94650 * 27 26 4 49 49 H 1.08999 * 109.46994 * 303.95075 * 27 26 4 50 50 H 1.08998 * 109.47316 * 288.61827 * 28 26 4 51 51 H 1.09004 * 109.46664 * 48.61732 * 28 26 4 52 52 H 1.09002 * 109.47110 * 168.60997 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6037 -0.2632 2.1369 6 6 1.6438 -2.1739 1.1874 7 8 2.3030 -2.9550 0.5344 8 7 0.5572 -2.6053 1.8579 9 6 0.0772 -4.0016 1.9749 10 6 -1.4593 -3.8624 1.8762 11 1 -1.7700 -3.7755 0.8350 12 6 -2.1611 -5.0420 2.5523 13 7 -1.9793 -6.2483 1.7413 14 6 -2.5237 -7.4365 2.1499 15 1 -3.0867 -7.4844 3.0702 16 6 -2.3519 -8.5795 1.3811 17 7 -1.6662 -8.5211 0.2592 18 14 -3.0940 -10.2005 1.9389 19 1 -3.8113 -10.0005 3.2237 20 1 -4.0471 -10.6887 0.9101 21 1 -2.0129 -11.2012 2.1266 22 6 -1.7370 -2.5481 2.6419 23 1 -2.0331 -2.7634 3.6686 24 6 -2.8254 -1.7381 1.9345 25 6 -0.4010 -1.7826 2.6198 26 7 3.5037 -0.6150 1.3127 27 6 4.0300 -1.2972 2.5025 28 6 4.1232 -1.1404 0.0887 29 1 -0.3633 0.4467 -0.9255 30 1 -0.3634 -1.0248 0.0759 31 1 -0.3634 0.5781 0.8496 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.4608 -4.6101 1.1560 37 1 0.3617 -4.4267 2.9374 38 1 -1.7322 -5.2013 3.5417 39 1 -3.2251 -4.8254 2.6481 40 1 -1.4739 -6.2053 0.9145 41 1 -1.5464 -9.3197 -0.2781 42 1 -2.5213 -1.5410 0.9067 43 1 -3.7575 -2.3033 1.9358 44 1 -2.9728 -0.7932 2.4576 45 1 -0.0389 -1.6382 3.6378 46 1 -0.5312 -0.8167 2.1318 47 1 5.1074 -1.1438 2.5626 48 1 3.8183 -2.3642 2.4331 49 1 3.5547 -0.8899 3.3948 50 1 4.0261 -2.2259 0.0694 51 1 3.6243 -0.7154 -0.7823 52 1 5.1789 -0.8696 0.0707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106282176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:30 Heat of formation + Delta-G solvation = -18.729048 kcal Electronic energy + Delta-G solvation = -28092.337113 eV Core-core repulsion = 24513.189696 eV Total energy + Delta-G solvation = -3579.147417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81821 -38.72510 -36.74234 -34.89340 -34.37745 -32.80878 -31.42799 -29.49554 -27.96310 -27.69811 -27.12339 -26.33307 -25.26465 -23.32558 -22.52562 -21.25568 -20.73217 -19.92470 -18.75871 -17.54690 -16.98087 -16.24017 -16.05716 -15.38878 -15.24878 -14.81096 -14.49253 -14.18963 -13.96774 -13.57865 -13.49059 -13.30175 -13.03611 -12.98740 -12.82129 -12.78158 -12.48904 -12.34433 -12.23466 -11.96839 -11.85145 -11.76981 -11.67902 -11.37009 -11.15936 -11.13359 -11.04728 -10.87318 -10.65897 -10.55173 -10.45949 -10.34127 -10.12359 -9.98579 -9.67649 -8.89013 -8.58757 -8.26334 -6.92789 -5.75836 -3.05289 2.59214 3.01130 3.43523 3.48704 3.51366 3.74935 4.34441 4.54261 4.57682 4.58632 4.72302 4.83369 4.87823 4.94049 5.13495 5.17252 5.27726 5.33525 5.39888 5.41245 5.47604 5.49399 5.50057 5.52571 5.57908 5.67387 5.73404 5.74392 5.76885 5.80630 5.81047 5.92549 5.96298 6.01482 6.08885 6.10562 6.12282 6.18673 6.19380 6.26454 6.39560 6.47986 6.69904 6.73417 6.80336 6.83331 7.62926 7.70131 8.20099 8.42205 9.53527 10.10825 10.45046 11.46845 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.003321 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.359405 B = 8429.464701 C = 9164.153618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 C -0.135 4.135 4 C 0.074 3.926 5 H 0.097 0.903 6 C 0.505 3.495 7 O -0.538 6.538 8 N -0.617 5.617 9 C 0.112 3.888 10 C -0.100 4.100 11 H 0.082 0.918 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.099 4.099 23 H 0.087 0.913 24 C -0.142 4.142 25 C 0.095 3.905 26 N -0.515 5.515 27 C 0.015 3.985 28 C 0.000 4.000 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.034 0.966 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 23.128 3.606 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.104 4.104 3 C -0.192 4.192 4 C -0.039 4.039 5 H 0.115 0.885 6 C 0.293 3.707 7 O -0.415 6.415 8 N -0.351 5.351 9 C -0.010 4.010 10 C -0.120 4.120 11 H 0.101 0.899 12 C 0.037 3.963 13 N -0.377 5.377 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.119 4.119 23 H 0.105 0.895 24 C -0.199 4.199 25 C -0.028 4.028 26 N -0.237 5.237 27 C -0.133 4.133 28 C -0.147 4.147 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.582 23.130 3.351 24.280 hybrid contribution -0.500 -1.911 0.080 1.977 sum 6.082 21.219 3.431 22.338 Atomic orbital electron populations 1.22070 0.94598 1.02558 1.02238 1.21131 0.95804 0.97111 0.96357 1.21709 1.02267 0.94040 1.01194 1.22016 0.89986 0.90838 1.01016 0.88460 1.21572 0.79411 0.91481 0.78260 1.90657 1.51977 1.57630 1.41221 1.49105 1.25365 1.09762 1.50857 1.22495 0.93514 0.82277 1.02732 1.22493 0.94396 0.94462 1.00658 0.89928 1.20622 0.96426 0.85539 0.93689 1.42376 1.64934 1.04173 1.26228 1.19250 1.26656 0.86453 1.04852 0.91140 1.24753 1.00940 0.98018 0.97223 1.69670 1.45140 1.28337 1.14807 0.86129 0.78333 0.84145 0.77641 1.20559 1.21868 1.21870 1.22076 0.93802 0.95133 1.00882 0.89495 1.21843 0.98603 0.99301 1.00179 1.22401 0.89092 0.95381 0.95928 1.62566 1.02323 1.54927 1.03917 1.22474 1.00961 0.97273 0.92639 1.22796 0.98702 1.01601 0.91640 0.91905 0.91904 0.92167 0.90258 0.91270 0.92992 0.92751 0.89484 0.90955 0.96186 0.95919 0.78235 0.93526 0.92561 0.91838 0.92726 0.91843 0.90164 0.90942 0.94709 0.91598 0.91320 0.91285 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 7.70 37.16 0.29 -1.13 16 2 C -0.08 -0.84 1.90 -90.62 -0.17 -1.01 16 3 C -0.13 -1.09 8.88 37.16 0.33 -0.76 16 4 C 0.07 0.82 1.49 -68.87 -0.10 0.71 16 5 H 0.10 0.95 7.01 -51.93 -0.36 0.59 16 6 C 0.51 7.33 4.83 -10.99 -0.05 7.28 16 7 O -0.54 -9.88 13.40 5.55 0.07 -9.80 16 8 N -0.62 -8.49 2.94 -169.98 -0.50 -8.99 16 9 C 0.11 1.84 6.46 -2.31 -0.01 1.83 16 10 C -0.10 -1.57 2.60 -88.93 -0.23 -1.80 16 11 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 12 C 0.17 3.20 5.58 -4.04 -0.02 3.17 16 13 N -0.73 -18.48 5.52 -59.91 -0.33 -18.81 16 14 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 18 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 C -0.10 -1.13 3.17 -89.25 -0.28 -1.42 16 23 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 24 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 25 C 0.10 0.99 5.38 -2.98 -0.02 0.98 16 26 N -0.51 -5.74 4.15 -244.59 -1.01 -6.76 16 27 C 0.01 0.16 9.18 60.06 0.55 0.71 16 28 C 0.00 0.00 8.35 60.07 0.50 0.50 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.69 6.05 -51.93 -0.31 0.38 16 31 H 0.06 0.45 7.10 -51.93 -0.37 0.08 16 32 H 0.08 0.91 6.40 -51.93 -0.33 0.58 16 33 H 0.07 0.60 7.04 -51.93 -0.37 0.24 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 1.72 7.82 -51.93 -0.41 1.32 16 37 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 38 H 0.02 0.39 8.00 -51.92 -0.42 -0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.70 4.12 -51.93 -0.21 0.49 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.03 0.46 6.89 -51.93 -0.36 0.10 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 1.01 5.57 -51.93 -0.29 0.72 16 51 H 0.07 0.77 5.57 -51.93 -0.29 0.48 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -32.22 388.32 -8.81 -41.02 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -9.45 Total: 7.19 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 0.86 Total: 0.61 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -1.12 Total: -62.42 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.22 -8.81 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106282176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.294 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds