Wall clock time and date at job start Fri Apr 10 2020 18:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00291 * 2 1 4 4 C 1.46905 * 111.00333 * 123.95718 * 2 1 3 5 5 C 1.53000 * 109.47183 * 66.04359 * 4 2 1 6 6 O 1.42903 * 109.47082 * 65.00330 * 5 4 2 7 7 C 1.42898 * 113.99931 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47092 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99918 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99910 * 179.71782 * 8 7 6 11 11 C 1.46499 * 119.99767 * 180.27234 * 10 8 7 12 12 H 1.08998 * 110.56274 * 36.97928 * 11 10 8 13 13 C 1.54857 * 110.62592 * 160.04664 * 11 10 8 14 14 C 1.55851 * 103.44260 * 118.49064 * 13 11 10 15 15 H 1.08999 * 116.12059 * 159.14836 * 14 13 11 16 16 C 1.55838 * 105.06533 * 288.17864 * 14 13 11 17 17 C 1.54845 * 103.44661 * 71.82428 * 16 14 13 18 18 C 1.55841 * 110.63225 * 274.07404 * 11 10 8 19 19 H 1.09007 * 115.56062 * 82.69589 * 18 11 10 20 20 N 1.50230 * 101.05426 * 208.57257 * 18 11 10 21 21 C 1.36932 * 130.84211 * 233.98398 * 20 18 11 22 22 H 1.08001 * 120.00309 * 0.02562 * 21 20 18 23 23 C 1.38815 * 120.00180 * 179.97438 * 21 20 18 24 24 N 1.31612 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99823 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46901 * 90.00428 * 25 23 21 27 27 H 1.48503 * 109.46884 * 210.00095 * 25 23 21 28 28 H 1.48496 * 109.47290 * 329.99837 * 25 23 21 29 29 H 1.09000 * 109.46926 * 296.04169 * 1 2 3 30 30 H 1.09002 * 109.47104 * 56.04601 * 1 2 3 31 31 H 1.09003 * 109.47207 * 176.04488 * 1 2 3 32 32 H 1.08997 * 109.47632 * 183.95757 * 3 2 1 33 33 H 1.08998 * 109.47081 * 303.95614 * 3 2 1 34 34 H 1.09004 * 109.47265 * 63.95400 * 3 2 1 35 35 H 1.09004 * 109.46744 * 306.04663 * 4 2 1 36 36 H 1.08995 * 109.47024 * 186.04603 * 4 2 1 37 37 H 1.09004 * 109.47184 * 305.00720 * 5 4 2 38 38 H 1.08995 * 109.47158 * 185.00574 * 5 4 2 39 39 H 1.08997 * 109.47397 * 59.99629 * 7 6 5 40 40 H 1.08998 * 109.46793 * 299.99748 * 7 6 5 41 41 H 0.96998 * 120.00123 * 0.27879 * 10 8 7 42 42 H 1.08997 * 110.62974 * 236.98507 * 13 11 10 43 43 H 1.08998 * 110.62295 * 0.02562 * 13 11 10 44 44 H 1.08998 * 110.62819 * 190.31818 * 16 14 13 45 45 H 1.09011 * 110.62722 * 313.17455 * 16 14 13 46 46 H 1.09005 * 110.62654 * 241.50849 * 17 16 14 47 47 H 1.09002 * 110.62548 * 118.49400 * 17 16 14 48 48 H 0.97008 * 120.00158 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.6315 -2.2427 0.9703 6 8 2.2956 -2.7696 -0.1801 7 6 2.0214 -4.1499 -0.4282 8 6 2.7687 -4.5975 -1.6579 9 8 3.4670 -3.8116 -2.2627 10 7 2.6651 -5.8723 -2.0827 11 6 3.3963 -6.3089 -3.2748 12 1 4.3736 -5.8286 -3.3217 13 6 3.5410 -7.8506 -3.2918 14 6 2.7866 -8.2710 -4.5891 15 1 3.0438 -9.2479 -4.9985 16 6 1.2772 -8.0522 -4.2688 17 6 1.1326 -6.5106 -4.2518 18 6 2.5742 -6.0079 -4.5641 19 1 2.6554 -4.9904 -4.9468 20 7 3.0658 -7.0932 -5.4790 21 6 3.6033 -7.0290 -6.7368 22 1 3.7284 -6.0724 -7.2224 23 6 3.9883 -8.1932 -7.3875 24 7 3.8364 -9.3588 -6.7956 25 14 4.7222 -8.1053 -9.1031 26 1 6.1975 -7.9680 -9.0039 27 1 4.3895 -9.3462 -9.8479 28 1 4.1629 -6.9320 -9.8213 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6611 1.1755 37 1 0.5532 -2.3390 0.8432 38 1 1.9438 -2.7964 1.8556 39 1 0.9512 -4.2854 -0.5844 40 1 2.3416 -4.7435 0.4281 41 1 2.1063 -6.5008 -1.5992 42 1 4.5911 -8.1371 -3.3482 43 1 3.0684 -8.2903 -2.4135 44 1 0.6522 -8.4880 -5.0483 45 1 1.0259 -8.4747 -3.2959 46 1 0.8101 -6.1660 -3.2692 47 1 0.4357 -6.1818 -5.0228 48 1 4.1058 -10.1724 -7.2501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109977354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:06 Heat of formation + Delta-G solvation = -17.382859 kcal Electronic energy + Delta-G solvation = -26641.082280 eV Core-core repulsion = 22926.160144 eV Total energy + Delta-G solvation = -3714.922136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.98820 -38.80126 -37.98511 -36.58968 -33.84462 -32.30500 -30.60508 -29.37048 -29.03062 -28.19668 -27.83843 -26.53710 -24.30000 -24.05103 -21.39004 -21.25192 -20.55875 -19.45762 -18.53934 -17.23143 -17.01484 -16.71840 -16.51964 -15.50374 -15.47398 -15.11900 -14.94549 -14.79477 -14.55448 -13.99318 -13.76472 -13.66314 -12.77970 -12.72562 -12.49010 -12.42923 -12.24457 -12.11763 -11.96139 -11.72937 -11.58798 -11.46433 -11.10415 -11.00751 -10.87679 -10.85601 -10.80162 -10.17985 -10.05988 -9.80087 -9.76385 -9.49152 -9.32815 -9.18752 -8.90182 -8.53731 -8.44635 -6.88009 -5.69762 -3.07367 2.93397 3.00027 3.42806 3.47803 3.49454 3.68279 4.02646 4.48990 4.71451 4.79180 4.92114 4.95336 5.06007 5.07329 5.12035 5.17144 5.19733 5.25364 5.32482 5.36324 5.42010 5.58097 5.60978 5.67115 5.68723 5.84934 5.88649 6.00328 6.10559 6.14824 6.34156 6.37434 6.56897 6.63907 6.71517 6.73895 6.77631 6.86314 6.96867 7.02500 7.08906 7.31002 7.56467 7.78227 7.90426 8.20136 8.59794 9.13951 9.76349 10.56936 11.40022 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.002722 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.170209 B =10282.987053 C =10821.756287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.063 3.937 6 O -0.344 6.344 7 C 0.043 3.957 8 C 0.508 3.492 9 O -0.518 6.518 10 N -0.713 5.713 11 C 0.130 3.870 12 H 0.082 0.918 13 C -0.140 4.140 14 C 0.154 3.846 15 H 0.155 0.845 16 C -0.137 4.137 17 C -0.129 4.129 18 C 0.128 3.872 19 H 0.086 0.914 20 N -0.590 5.590 21 C -0.208 4.208 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.925 5.925 25 Si 0.917 3.083 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.394 0.606 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 11.206 19.274 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.015 4.015 6 O -0.261 6.261 7 C -0.037 4.037 8 C 0.292 3.708 9 O -0.392 6.392 10 N -0.366 5.366 11 C 0.024 3.976 12 H 0.100 0.900 13 C -0.180 4.180 14 C 0.047 3.953 15 H 0.171 0.829 16 C -0.177 4.177 17 C -0.169 4.169 18 C 0.019 3.981 19 H 0.104 0.896 20 N -0.311 5.311 21 C -0.336 4.336 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.573 5.573 25 Si 0.748 3.252 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.228 0.772 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.152 11.554 17.966 22.527 hybrid contribution -0.480 -0.005 0.405 0.628 sum -7.632 11.550 18.371 23.003 Atomic orbital electron populations 1.22450 0.87550 1.02377 1.00259 1.61864 1.07691 1.13700 1.42871 1.22376 1.01130 0.88501 1.00180 1.22143 1.01578 0.91989 0.91374 1.22597 0.96477 0.93979 0.88426 1.88151 1.69711 1.22201 1.46082 1.22223 0.99592 0.85086 0.96828 1.20129 0.82469 0.82636 0.85540 1.90741 1.38982 1.52575 1.56941 1.46137 1.49785 1.10566 1.30142 1.22625 0.95640 0.95605 0.83688 0.90022 1.23283 1.01764 0.93037 0.99892 1.23765 0.89262 0.96143 0.86136 0.82871 1.23054 1.00851 0.94968 0.98792 1.22889 0.98162 0.96735 0.99092 1.23206 0.92197 0.93369 0.89337 0.89614 1.46486 1.70564 1.00619 1.13415 1.19081 1.32087 0.93349 0.89093 0.90286 1.24692 1.02160 0.95078 0.98902 1.69433 1.53645 0.97009 1.37244 0.86024 0.78891 0.76809 0.83521 1.21661 1.21725 1.20748 0.95976 0.91240 0.91231 0.91134 0.91263 0.96021 0.93402 0.89625 0.93143 0.92912 0.90791 0.90930 0.77225 0.91593 0.92733 0.92713 0.93685 0.93123 0.93101 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.33 60.06 0.56 0.75 16 2 N -0.54 -5.63 4.97 -251.26 -1.25 -6.88 16 3 C 0.03 0.23 9.57 60.06 0.57 0.80 16 4 C 0.06 0.51 5.34 -3.82 -0.02 0.49 16 5 C 0.06 0.58 5.99 37.16 0.22 0.80 16 6 O -0.34 -4.68 9.82 -55.14 -0.54 -5.22 16 7 C 0.04 0.50 6.42 36.01 0.23 0.73 16 8 C 0.51 8.13 7.90 -10.99 -0.09 8.04 16 9 O -0.52 -10.99 16.23 -14.36 -0.23 -11.22 16 10 N -0.71 -10.59 3.63 -51.40 -0.19 -10.78 16 11 C 0.13 2.48 3.08 -65.44 -0.20 2.28 16 12 H 0.08 1.77 7.70 -51.93 -0.40 1.37 16 13 C -0.14 -2.66 6.20 -24.23 -0.15 -2.81 16 14 C 0.15 3.46 4.72 -62.80 -0.30 3.17 16 15 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 16 C -0.14 -2.64 6.44 -24.24 -0.16 -2.80 16 17 C -0.13 -2.41 6.32 -24.24 -0.15 -2.56 16 18 C 0.13 2.75 5.35 -62.81 -0.34 2.42 16 19 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 20 N -0.59 -14.91 2.98 -145.82 -0.44 -15.35 16 21 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.92 -26.38 10.46 55.49 0.58 -25.80 16 25 Si 0.92 22.28 29.55 -169.99 -5.02 17.26 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.07 0.59 6.37 -51.93 -0.33 0.25 16 32 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.05 0.33 8.12 -51.93 -0.42 -0.09 16 36 H 0.09 0.81 8.06 -51.93 -0.42 0.40 16 37 H 0.05 0.41 6.34 -51.93 -0.33 0.08 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.39 4.56 8.02 -40.82 -0.33 4.23 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.72 7.82 -51.92 -0.41 0.32 16 46 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -33.73 377.27 -9.72 -43.46 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.25 Total: 3.99 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.07 Total: 4.85 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -1.29 Total: -58.80 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.77 Total: -16.44 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.73 -9.72 -43.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109977354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds