Wall clock time and date at job start Fri Apr 10 2020 18:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00291 * 2 1 4 4 C 1.46905 * 111.00333 * 123.95718 * 2 1 3 5 5 C 1.53000 * 109.47183 * 66.04359 * 4 2 1 6 6 O 1.42903 * 109.47082 * 65.00330 * 5 4 2 7 7 C 1.42898 * 113.99931 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47092 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99918 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99910 * 179.71782 * 8 7 6 11 11 C 1.46499 * 119.99767 * 180.27234 * 10 8 7 12 12 H 1.08998 * 110.56274 * 36.97928 * 11 10 8 13 13 C 1.54857 * 110.62592 * 160.04664 * 11 10 8 14 14 C 1.55851 * 103.44260 * 118.49064 * 13 11 10 15 15 H 1.08999 * 116.12059 * 159.14836 * 14 13 11 16 16 C 1.55838 * 105.06533 * 288.17864 * 14 13 11 17 17 C 1.54845 * 103.44661 * 71.82428 * 16 14 13 18 18 C 1.55841 * 110.63225 * 274.07404 * 11 10 8 19 19 H 1.09007 * 115.56062 * 82.69589 * 18 11 10 20 20 N 1.50230 * 101.05426 * 208.57257 * 18 11 10 21 21 C 1.36932 * 130.84211 * 233.98398 * 20 18 11 22 22 H 1.08001 * 120.00309 * 0.02562 * 21 20 18 23 23 C 1.38815 * 120.00180 * 179.97438 * 21 20 18 24 24 N 1.31612 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99823 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46901 * 90.00428 * 25 23 21 27 27 H 1.48503 * 109.46884 * 210.00095 * 25 23 21 28 28 H 1.48496 * 109.47290 * 329.99837 * 25 23 21 29 29 H 1.09000 * 109.46926 * 296.04169 * 1 2 3 30 30 H 1.09002 * 109.47104 * 56.04601 * 1 2 3 31 31 H 1.09003 * 109.47207 * 176.04488 * 1 2 3 32 32 H 1.08997 * 109.47632 * 183.95757 * 3 2 1 33 33 H 1.08998 * 109.47081 * 303.95614 * 3 2 1 34 34 H 1.09004 * 109.47265 * 63.95400 * 3 2 1 35 35 H 1.09004 * 109.46744 * 306.04663 * 4 2 1 36 36 H 1.08995 * 109.47024 * 186.04603 * 4 2 1 37 37 H 1.09004 * 109.47184 * 305.00720 * 5 4 2 38 38 H 1.08995 * 109.47158 * 185.00574 * 5 4 2 39 39 H 1.08997 * 109.47397 * 59.99629 * 7 6 5 40 40 H 1.08998 * 109.46793 * 299.99748 * 7 6 5 41 41 H 0.96998 * 120.00123 * 0.27879 * 10 8 7 42 42 H 1.08997 * 110.62974 * 236.98507 * 13 11 10 43 43 H 1.08998 * 110.62295 * 0.02562 * 13 11 10 44 44 H 1.08998 * 110.62819 * 190.31818 * 16 14 13 45 45 H 1.09011 * 110.62722 * 313.17455 * 16 14 13 46 46 H 1.09005 * 110.62654 * 241.50849 * 17 16 14 47 47 H 1.09002 * 110.62548 * 118.49400 * 17 16 14 48 48 H 0.97008 * 120.00158 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.6315 -2.2427 0.9703 6 8 2.2956 -2.7696 -0.1801 7 6 2.0214 -4.1499 -0.4282 8 6 2.7687 -4.5975 -1.6579 9 8 3.4670 -3.8116 -2.2627 10 7 2.6651 -5.8723 -2.0827 11 6 3.3963 -6.3089 -3.2748 12 1 4.3736 -5.8286 -3.3217 13 6 3.5410 -7.8506 -3.2918 14 6 2.7866 -8.2710 -4.5891 15 1 3.0438 -9.2479 -4.9985 16 6 1.2772 -8.0522 -4.2688 17 6 1.1326 -6.5106 -4.2518 18 6 2.5742 -6.0079 -4.5641 19 1 2.6554 -4.9904 -4.9468 20 7 3.0658 -7.0932 -5.4790 21 6 3.6033 -7.0290 -6.7368 22 1 3.7284 -6.0724 -7.2224 23 6 3.9883 -8.1932 -7.3875 24 7 3.8364 -9.3588 -6.7956 25 14 4.7222 -8.1053 -9.1031 26 1 6.1975 -7.9680 -9.0039 27 1 4.3895 -9.3462 -9.8479 28 1 4.1629 -6.9320 -9.8213 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6611 1.1755 37 1 0.5532 -2.3390 0.8432 38 1 1.9438 -2.7964 1.8556 39 1 0.9512 -4.2854 -0.5844 40 1 2.3416 -4.7435 0.4281 41 1 2.1063 -6.5008 -1.5992 42 1 4.5911 -8.1371 -3.3482 43 1 3.0684 -8.2903 -2.4135 44 1 0.6522 -8.4880 -5.0483 45 1 1.0259 -8.4747 -3.2959 46 1 0.8101 -6.1660 -3.2692 47 1 0.4357 -6.1818 -5.0228 48 1 4.1058 -10.1724 -7.2501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109977354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:05 Heat of formation + Delta-G solvation = -41.259705 kcal Electronic energy + Delta-G solvation = -26642.117658 eV Core-core repulsion = 22926.160144 eV Total energy + Delta-G solvation = -3715.957514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45630 -39.98976 -38.99789 -37.43606 -35.42727 -34.20647 -31.44524 -30.99482 -30.70439 -29.60972 -28.47227 -27.80210 -26.00942 -24.93128 -22.88438 -22.03083 -21.90366 -21.15332 -20.14939 -18.96459 -18.12597 -17.67753 -17.46160 -16.86071 -16.63401 -16.51065 -16.08825 -15.84437 -15.74683 -15.68188 -14.96551 -14.87472 -14.09973 -13.94214 -13.54839 -13.48173 -13.35455 -13.19038 -13.14344 -13.08594 -12.86656 -12.77928 -12.61129 -12.59550 -12.35000 -12.26957 -11.99219 -11.89304 -11.79033 -11.53923 -11.17170 -11.03563 -10.77347 -10.69003 -10.52561 -9.95314 -9.18649 -8.85113 -7.79781 -5.18760 1.45703 1.47233 1.55349 1.71561 1.93760 2.49281 3.02826 3.14449 3.33649 3.54236 3.83221 3.99572 4.10075 4.12985 4.16732 4.19328 4.28851 4.34714 4.40597 4.44642 4.48775 4.49320 4.56195 4.57408 4.63663 4.68198 4.73574 4.76221 4.83168 4.93633 4.99713 5.01484 5.07104 5.08906 5.17068 5.25948 5.34283 5.48120 5.56684 5.77871 5.90560 6.07251 6.13686 6.28304 6.32681 6.73594 7.06427 7.41109 7.69225 8.55555 9.27049 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.002722 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.170209 B =10282.987053 C =10821.756287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.570 5.570 3 C 0.027 3.973 4 C 0.055 3.945 5 C 0.060 3.940 6 O -0.386 6.386 7 C 0.051 3.949 8 C 0.503 3.497 9 O -0.580 6.580 10 N -0.695 5.695 11 C 0.148 3.852 12 H 0.046 0.954 13 C -0.124 4.124 14 C 0.137 3.863 15 H 0.121 0.879 16 C -0.125 4.125 17 C -0.114 4.114 18 C 0.116 3.884 19 H 0.059 0.941 20 N -0.620 5.620 21 C -0.226 4.226 22 H 0.068 0.932 23 C -0.062 4.062 24 N -0.943 5.943 25 Si 0.975 3.025 26 H -0.289 1.289 27 H -0.289 1.289 28 H -0.277 1.277 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.417 0.583 42 H 0.045 0.955 43 H 0.102 0.898 44 H 0.034 0.966 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.039 0.961 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 11.001 22.249 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.295 5.295 3 C -0.121 4.121 4 C -0.073 4.073 5 C -0.017 4.017 6 O -0.305 6.305 7 C -0.029 4.029 8 C 0.291 3.709 9 O -0.458 6.458 10 N -0.350 5.350 11 C 0.041 3.959 12 H 0.065 0.935 13 C -0.163 4.163 14 C 0.032 3.968 15 H 0.138 0.862 16 C -0.164 4.164 17 C -0.154 4.154 18 C 0.008 3.992 19 H 0.077 0.923 20 N -0.342 5.342 21 C -0.355 4.355 22 H 0.086 0.914 23 C -0.255 4.255 24 N -0.593 5.593 25 Si 0.804 3.196 26 H -0.216 1.216 27 H -0.215 1.215 28 H -0.203 1.203 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.255 0.745 42 H 0.064 0.936 43 H 0.120 0.880 44 H 0.053 0.947 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.058 0.942 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.184 11.338 21.006 25.577 hybrid contribution 0.146 0.129 -0.487 0.525 sum -9.039 11.468 20.519 25.184 Atomic orbital electron populations 1.22438 0.86571 1.02514 1.00904 1.61862 1.08894 1.14565 1.44176 1.22352 1.00566 0.88216 1.00940 1.22205 1.00911 0.92239 0.91954 1.22817 0.97029 0.93898 0.87934 1.88105 1.70960 1.23286 1.48119 1.22278 1.00410 0.84929 0.95239 1.21111 0.81571 0.81927 0.86326 1.90727 1.41748 1.54249 1.59122 1.45829 1.49385 1.11080 1.28683 1.22032 0.94081 0.95367 0.84435 0.93528 1.23112 1.00582 0.92699 0.99941 1.23708 0.92148 0.94053 0.86939 0.86170 1.22949 0.97669 0.95176 1.00578 1.22794 0.95521 0.96220 1.00820 1.23330 0.94641 0.91519 0.89728 0.92261 1.46751 1.71115 1.02922 1.13387 1.19290 1.32315 0.93114 0.90804 0.91428 1.25397 1.03072 0.94908 1.02145 1.69657 1.54363 0.97110 1.38130 0.85116 0.77902 0.76737 0.79803 1.21650 1.21520 1.20265 0.94405 0.91647 0.91160 0.92007 0.91372 0.94459 0.91026 0.91016 0.91719 0.90377 0.87568 0.87074 0.74452 0.93627 0.87994 0.94707 0.88980 0.89165 0.94203 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.33 127.69 1.19 1.55 16 2 N -0.57 -11.25 4.97 -948.85 -4.71 -15.96 16 3 C 0.03 0.45 9.57 127.69 1.22 1.67 16 4 C 0.05 0.87 5.34 86.30 0.46 1.33 16 5 C 0.06 0.90 5.99 71.98 0.43 1.33 16 6 O -0.39 -9.58 9.82 -129.94 -1.28 -10.86 16 7 C 0.05 0.96 6.42 71.24 0.46 1.42 16 8 C 0.50 15.06 7.90 87.66 0.69 15.76 16 9 O -0.58 -24.88 16.23 15.99 0.26 -24.62 16 10 N -0.70 -18.52 3.63 -434.91 -1.58 -20.10 16 11 C 0.15 5.55 3.08 46.61 0.14 5.70 16 12 H 0.05 2.09 7.70 -2.39 -0.02 2.07 16 13 C -0.12 -4.51 6.20 32.21 0.20 -4.31 16 14 C 0.14 6.16 4.72 46.23 0.22 6.38 16 15 H 0.12 6.31 5.52 -2.39 -0.01 6.30 16 16 C -0.12 -4.49 6.44 32.21 0.21 -4.28 16 17 C -0.11 -4.02 6.32 32.21 0.20 -3.82 16 18 C 0.12 5.04 5.35 46.23 0.25 5.29 16 19 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 20 N -0.62 -32.18 2.98 -615.27 -1.84 -34.02 16 21 C -0.23 -13.16 10.59 84.03 0.89 -12.27 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 24 N -0.94 -55.27 10.46 21.65 0.23 -55.04 16 25 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 29 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.07 1.02 6.37 -2.39 -0.02 1.00 16 32 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 33 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.78 8.12 -2.38 -0.02 0.76 16 36 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 37 H 0.06 0.78 6.34 -2.38 -0.02 0.77 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.42 7.34 8.02 -92.71 -0.74 6.59 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 2.72 7.34 -2.39 -0.02 2.70 16 44 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 2.46 7.82 -2.38 -0.02 2.45 16 46 H 0.09 2.45 6.48 -2.38 -0.02 2.43 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 48 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -79.22 377.27 0.34 -78.88 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.20 Total: 20.03 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 7.03 Total: 12.62 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -7.90 Total: -125.11 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.02 Total: -35.47 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -79.22 0.34 -78.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109977354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.618 kcal (2) G-P(sol) polarization free energy of solvation -79.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds