Wall clock time and date at job start Fri Apr 10 2020 18:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 110.54483 * 2 1 4 4 O 1.42101 * 110.54457 * 223.24638 * 2 1 3 5 5 C 1.76203 * 104.44780 * 111.62421 * 2 1 3 6 6 C 1.38377 * 119.92794 * 270.27512 * 5 2 1 7 7 C 1.38337 * 120.29279 * 180.23937 * 6 5 2 8 8 C 1.37977 * 120.14498 * 359.47959 * 7 6 5 9 9 C 1.39553 * 119.85073 * 0.26674 * 8 7 6 10 10 C 1.47852 * 120.14423 * 179.97438 * 9 8 7 11 11 O 1.21546 * 119.99870 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99793 * 359.97438 * 10 9 8 13 13 N 1.40095 * 120.00039 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00411 * 180.02562 * 13 12 10 15 15 O 1.21686 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.46380 * 120.00346 * 179.97438 * 14 13 12 17 17 H 1.07996 * 119.99586 * 353.94965 * 16 14 13 18 18 C 1.40051 * 119.99895 * 173.94069 * 16 14 13 19 19 N 1.30670 * 119.99955 * 6.15124 * 18 16 14 20 20 Si 1.86797 * 119.99803 * 186.15356 * 18 16 14 21 21 H 1.48502 * 109.47099 * 94.98347 * 20 18 16 22 22 H 1.48496 * 109.47232 * 214.98249 * 20 18 16 23 23 H 1.48500 * 109.47278 * 334.98567 * 20 18 16 24 24 C 1.37944 * 119.92703 * 90.00149 * 5 2 1 25 25 H 1.09006 * 109.47018 * 308.38022 * 1 2 3 26 26 H 1.08997 * 109.46791 * 68.37623 * 1 2 3 27 27 H 1.08994 * 109.47273 * 188.37790 * 1 2 3 28 28 H 1.08002 * 119.85588 * 359.97357 * 6 5 2 29 29 H 1.08009 * 119.92890 * 179.76649 * 7 6 5 30 30 H 1.07999 * 120.07276 * 180.23119 * 8 7 6 31 31 H 0.97003 * 120.00202 * 0.02562 * 12 10 9 32 32 H 0.97003 * 119.99758 * 0.02562 * 13 12 10 33 33 H 0.97004 * 119.99648 * 179.97438 * 19 18 16 34 34 H 1.07992 * 120.06908 * 0.04077 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4203 0.2391 2.6510 7 6 2.7702 -0.2459 3.8984 8 6 2.9449 -1.6009 4.0910 9 6 2.7732 -2.4822 3.0226 10 6 2.9593 -3.9354 3.2216 11 8 2.8086 -4.7006 2.2893 12 7 3.2960 -4.4115 4.4367 13 7 3.4729 -5.7884 4.6251 14 6 3.8090 -6.2646 5.8402 15 8 3.9585 -5.4986 6.7739 16 6 3.9933 -7.7034 6.0372 17 1 3.7655 -8.3915 5.2367 18 6 4.4652 -8.1874 7.2638 19 7 4.6266 -7.3699 8.2703 20 14 4.8638 -10.0017 7.4608 21 1 6.3130 -10.2190 7.2204 22 1 4.5198 -10.4373 8.8382 23 1 4.0756 -10.7910 6.4806 24 6 2.4254 -1.9858 1.7652 25 1 -0.3633 0.6381 0.8056 26 1 -0.3633 0.3787 -0.9553 27 1 -0.3633 -1.0166 0.1497 28 1 2.2808 1.3003 2.5066 29 1 2.9025 0.4373 4.7245 30 1 3.2144 -1.9786 5.0662 31 1 3.4159 -3.8008 5.1807 32 1 3.3534 -6.3990 3.8809 33 1 4.9531 -7.7053 9.1200 34 1 2.2913 -2.6624 0.9342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116662695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:14 Heat of formation + Delta-G solvation = -77.970342 kcal Electronic energy + Delta-G solvation = -22474.688416 eV Core-core repulsion = 18694.673935 eV Total energy + Delta-G solvation = -3780.014481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 312.066 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.22251 -38.55411 -37.40263 -37.13109 -36.23186 -34.32793 -32.66737 -32.13167 -31.45736 -29.95028 -29.72196 -26.34151 -24.17997 -23.38006 -21.08120 -20.63387 -19.41718 -18.56033 -17.26932 -16.89970 -16.55081 -16.34640 -16.17731 -16.01251 -15.29840 -14.94284 -14.88411 -14.42649 -14.03347 -13.84226 -13.71799 -13.57970 -13.19871 -12.71676 -12.64805 -12.52854 -12.37263 -12.31194 -11.90664 -11.45817 -11.43163 -11.19956 -10.99009 -10.71219 -10.41639 -10.23976 -9.87372 -9.74616 -9.34485 -9.02330 -8.04733 -7.26579 -6.45091 -4.88755 -0.28830 0.38269 0.76832 2.49141 2.66757 2.71834 3.04755 3.13201 3.17905 3.45417 3.68921 3.78407 4.00253 4.32897 4.35251 4.38466 4.45460 4.60410 4.68346 4.79358 5.08199 5.20925 5.24758 5.46190 5.52421 5.52820 5.68639 5.89983 5.91619 6.39906 7.17709 7.23818 7.68096 7.82368 8.09604 8.65725 8.78583 9.12258 10.28675 10.47981 Molecular weight = 312.07amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.002584 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.364894 B =10832.870408 C =11370.965454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.938 6.938 4 O -0.932 6.932 5 C -0.670 4.670 6 C -0.007 4.007 7 C -0.142 4.142 8 C -0.035 4.035 9 C -0.133 4.133 10 C 0.539 3.461 11 O -0.551 6.551 12 N -0.501 5.501 13 N -0.558 5.558 14 C 0.554 3.446 15 O -0.581 6.581 16 C -0.530 4.530 17 H 0.077 0.923 18 C 0.087 3.913 19 N -0.762 5.762 20 Si 0.919 3.081 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.262 1.262 24 C 0.033 3.967 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.423 0.577 32 H 0.415 0.585 33 H 0.273 0.727 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 15.654 -10.992 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.682 3.318 3 O -0.935 6.935 4 O -0.929 6.929 5 C -0.756 4.756 6 C -0.027 4.027 7 C -0.161 4.161 8 C -0.054 4.054 9 C -0.139 4.139 10 C 0.324 3.676 11 O -0.430 6.430 12 N -0.243 5.243 13 N -0.313 5.313 14 C 0.360 3.640 15 O -0.463 6.463 16 C -0.569 4.569 17 H 0.095 0.905 18 C -0.134 4.134 19 N -0.390 5.390 20 Si 0.743 3.257 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.186 1.186 24 C 0.013 3.987 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.265 0.735 32 H 0.255 0.745 33 H 0.083 0.917 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.730 15.926 -11.338 21.022 hybrid contribution -0.216 -1.091 1.017 1.507 sum -7.946 14.835 -10.321 19.742 Atomic orbital electron populations 1.30226 1.25536 1.12384 1.11853 1.05138 0.77909 0.74585 0.74165 1.93583 1.77437 1.36505 1.86021 1.93620 1.77214 1.61437 1.60651 1.30570 1.20113 1.02489 1.22464 1.21122 0.90652 0.99514 0.91375 1.21267 1.01583 0.95363 0.97851 1.21816 0.91416 0.93680 0.98504 1.19994 1.05778 0.93047 0.95035 1.18020 0.79647 0.87539 0.82423 1.90766 1.53473 1.58104 1.40701 1.44559 1.67413 1.01052 1.11227 1.45973 1.78476 0.92058 1.14755 1.18681 0.76872 0.89912 0.78564 1.90607 1.56618 1.58924 1.40151 1.20692 1.47326 0.88909 0.99933 0.90477 1.25727 0.93147 0.99747 0.94758 1.70008 1.31617 1.35881 1.01511 0.86168 0.79409 0.81841 0.78328 1.19554 1.20265 1.18580 1.21022 0.87777 0.93100 0.96805 0.84927 0.84934 0.84706 0.83661 0.84126 0.84327 0.73533 0.74518 0.91668 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.57 10.80 101.05 1.09 -1.48 16 2 S 2.50 20.54 5.80 -107.50 -0.62 19.92 16 3 O -0.94 -9.98 17.12 -57.54 -0.99 -10.97 16 4 O -0.93 -11.33 17.12 -57.54 -0.98 -12.31 16 5 C -0.67 -6.61 5.65 -39.64 -0.22 -6.83 16 6 C -0.01 -0.06 9.47 -39.49 -0.37 -0.44 16 7 C -0.14 -1.27 10.03 -39.64 -0.40 -1.67 16 8 C -0.04 -0.40 9.54 -39.19 -0.37 -0.77 16 9 C -0.13 -1.86 5.87 -104.97 -0.62 -2.48 16 10 C 0.54 9.68 7.89 -12.33 -0.10 9.58 16 11 O -0.55 -11.35 16.19 5.33 0.09 -11.26 16 12 N -0.50 -9.82 6.21 30.53 0.19 -9.63 16 13 N -0.56 -12.81 6.25 30.19 0.19 -12.62 16 14 C 0.55 15.05 7.86 -12.99 -0.10 14.95 16 15 O -0.58 -17.45 14.88 5.20 0.08 -17.37 16 16 C -0.53 -14.28 9.54 -35.63 -0.34 -14.62 16 17 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 18 C 0.09 2.31 5.49 -17.37 -0.10 2.21 16 19 N -0.76 -21.56 11.85 55.55 0.66 -20.90 16 20 Si 0.92 19.20 29.56 -169.99 -5.03 14.17 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 C 0.03 0.41 9.01 -39.18 -0.35 0.06 16 25 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.15 0.89 7.57 -52.49 -0.40 0.49 16 29 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 30 H 0.14 1.45 6.41 -52.49 -0.34 1.11 16 31 H 0.42 7.74 6.03 -182.60 -1.10 6.64 16 32 H 0.42 9.03 7.98 -182.60 -1.46 7.58 16 33 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 34 H 0.16 1.98 7.16 -52.49 -0.38 1.61 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -38.82 321.23 -8.36 -47.19 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -4.90 Total: 10.42 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.88 Total: -1.48 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 1.04 Total: -43.14 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -1.81 Total: -51.92 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: 20.54 SS G_CDS: -0.62 Total: 19.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -38.82 -8.36 -47.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.781 kcal (2) G-P(sol) polarization free energy of solvation -38.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds