Wall clock time and date at job start Fri Apr 10 2020 18:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 110.54483 * 2 1 4 4 O 1.42101 * 110.54457 * 223.24638 * 2 1 3 5 5 C 1.76203 * 104.44780 * 111.62421 * 2 1 3 6 6 C 1.38377 * 119.92794 * 270.27512 * 5 2 1 7 7 C 1.38337 * 120.29279 * 180.23937 * 6 5 2 8 8 C 1.37977 * 120.14498 * 359.47959 * 7 6 5 9 9 C 1.39553 * 119.85073 * 0.26674 * 8 7 6 10 10 C 1.47852 * 120.14423 * 179.97438 * 9 8 7 11 11 O 1.21546 * 119.99870 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99793 * 359.97438 * 10 9 8 13 13 N 1.40095 * 120.00039 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00411 * 180.02562 * 13 12 10 15 15 O 1.21686 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.46380 * 120.00346 * 179.97438 * 14 13 12 17 17 H 1.07996 * 119.99586 * 353.94965 * 16 14 13 18 18 C 1.40051 * 119.99895 * 173.94069 * 16 14 13 19 19 N 1.30670 * 119.99955 * 6.15124 * 18 16 14 20 20 Si 1.86797 * 119.99803 * 186.15356 * 18 16 14 21 21 H 1.48502 * 109.47099 * 94.98347 * 20 18 16 22 22 H 1.48496 * 109.47232 * 214.98249 * 20 18 16 23 23 H 1.48500 * 109.47278 * 334.98567 * 20 18 16 24 24 C 1.37944 * 119.92703 * 90.00149 * 5 2 1 25 25 H 1.09006 * 109.47018 * 308.38022 * 1 2 3 26 26 H 1.08997 * 109.46791 * 68.37623 * 1 2 3 27 27 H 1.08994 * 109.47273 * 188.37790 * 1 2 3 28 28 H 1.08002 * 119.85588 * 359.97357 * 6 5 2 29 29 H 1.08009 * 119.92890 * 179.76649 * 7 6 5 30 30 H 1.07999 * 120.07276 * 180.23119 * 8 7 6 31 31 H 0.97003 * 120.00202 * 0.02562 * 12 10 9 32 32 H 0.97003 * 119.99758 * 0.02562 * 13 12 10 33 33 H 0.97004 * 119.99648 * 179.97438 * 19 18 16 34 34 H 1.07992 * 120.06908 * 0.04077 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4203 0.2391 2.6510 7 6 2.7702 -0.2459 3.8984 8 6 2.9449 -1.6009 4.0910 9 6 2.7732 -2.4822 3.0226 10 6 2.9593 -3.9354 3.2216 11 8 2.8086 -4.7006 2.2893 12 7 3.2960 -4.4115 4.4367 13 7 3.4729 -5.7884 4.6251 14 6 3.8090 -6.2646 5.8402 15 8 3.9585 -5.4986 6.7739 16 6 3.9933 -7.7034 6.0372 17 1 3.7655 -8.3915 5.2367 18 6 4.4652 -8.1874 7.2638 19 7 4.6266 -7.3699 8.2703 20 14 4.8638 -10.0017 7.4608 21 1 6.3130 -10.2190 7.2204 22 1 4.5198 -10.4373 8.8382 23 1 4.0756 -10.7910 6.4806 24 6 2.4254 -1.9858 1.7652 25 1 -0.3633 0.6381 0.8056 26 1 -0.3633 0.3787 -0.9553 27 1 -0.3633 -1.0166 0.1497 28 1 2.2808 1.3003 2.5066 29 1 2.9025 0.4373 4.7245 30 1 3.2144 -1.9786 5.0662 31 1 3.4159 -3.8008 5.1807 32 1 3.3534 -6.3990 3.8809 33 1 4.9531 -7.7053 9.1200 34 1 2.2913 -2.6624 0.9342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116662695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:13 Heat of formation + Delta-G solvation = -110.534486 kcal Electronic energy + Delta-G solvation = -22476.100503 eV Core-core repulsion = 18694.673935 eV Total energy + Delta-G solvation = -3781.426568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 312.066 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49677 -39.88248 -38.94363 -38.15533 -36.99564 -36.10152 -34.68377 -33.35250 -32.32988 -31.37356 -30.24230 -28.30101 -25.28934 -24.29009 -22.53901 -22.31748 -20.53847 -19.51536 -18.85634 -18.45065 -17.72931 -17.27389 -17.09899 -16.98141 -16.88771 -16.40051 -15.87206 -15.85192 -15.42253 -14.95373 -14.86506 -14.60482 -14.13154 -13.92031 -13.83708 -13.38773 -13.31804 -13.15447 -13.11764 -12.90315 -12.79204 -12.72578 -12.10563 -12.05880 -12.03437 -11.72319 -11.35817 -10.98922 -10.59698 -10.25021 -10.18221 -9.09838 -8.44191 -6.98660 -0.89453 -0.50867 -0.13872 1.11754 1.39491 1.43806 1.52294 1.59901 1.87486 2.25165 2.32108 2.47334 3.00711 3.03495 3.26454 3.45213 3.68597 3.74004 3.85060 4.01862 4.10912 4.14113 4.33414 4.41357 4.70834 4.85231 4.99664 5.00483 5.10113 5.24100 5.40679 5.60377 5.91644 6.01857 6.24518 6.73368 7.05225 7.18349 8.25154 8.51287 Molecular weight = 312.07amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.002584 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.364894 B =10832.870408 C =11370.965454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.509 3.491 3 O -0.964 6.964 4 O -0.981 6.981 5 C -0.669 4.669 6 C 0.003 3.997 7 C -0.133 4.133 8 C -0.040 4.040 9 C -0.158 4.158 10 C 0.543 3.457 11 O -0.582 6.582 12 N -0.506 5.506 13 N -0.558 5.558 14 C 0.542 3.458 15 O -0.619 6.619 16 C -0.559 4.559 17 H 0.093 0.907 18 C 0.034 3.966 19 N -0.811 5.811 20 Si 1.005 2.995 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.250 1.250 24 C 0.020 3.980 25 H 0.162 0.838 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.180 0.820 29 H 0.177 0.823 30 H 0.142 0.858 31 H 0.427 0.573 32 H 0.419 0.581 33 H 0.280 0.720 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.601 16.877 -11.267 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.691 3.309 3 O -0.961 6.961 4 O -0.978 6.978 5 C -0.753 4.753 6 C -0.015 4.015 7 C -0.151 4.151 8 C -0.059 4.059 9 C -0.164 4.164 10 C 0.331 3.669 11 O -0.463 6.463 12 N -0.249 5.249 13 N -0.310 5.310 14 C 0.348 3.652 15 O -0.505 6.505 16 C -0.597 4.597 17 H 0.111 0.889 18 C -0.183 4.183 19 N -0.439 5.439 20 Si 0.823 3.177 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.173 1.173 24 C 0.000 4.000 25 H 0.180 0.820 26 H 0.175 0.825 27 H 0.165 0.835 28 H 0.198 0.802 29 H 0.194 0.806 30 H 0.160 0.840 31 H 0.270 0.730 32 H 0.260 0.740 33 H 0.091 0.909 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.935 17.166 -11.643 22.585 hybrid contribution 0.053 -1.275 0.994 1.617 sum -8.881 15.892 -10.649 21.091 Atomic orbital electron populations 1.30039 1.18961 1.14198 1.14561 1.04915 0.80178 0.73051 0.72721 1.93545 1.79684 1.36991 1.85913 1.93563 1.79895 1.62566 1.61823 1.30818 1.19428 1.01253 1.23798 1.21642 0.88277 1.00991 0.90632 1.21682 0.99774 0.94511 0.99158 1.21939 0.91478 0.94661 0.97840 1.19726 1.09299 0.90543 0.96800 1.18741 0.77754 0.89259 0.81115 1.90731 1.54629 1.59525 1.41463 1.44700 1.68622 0.99349 1.12247 1.45518 1.77589 0.94114 1.13758 1.18920 0.76809 0.90347 0.79088 1.90559 1.58443 1.59833 1.41628 1.21228 1.47931 0.89389 1.01148 0.88928 1.26949 0.92088 1.05390 0.93830 1.70130 1.32497 1.38852 1.02439 0.84892 0.79409 0.74574 0.78790 1.18736 1.19306 1.17280 1.20979 0.88718 0.94411 0.95888 0.81991 0.82476 0.83526 0.80244 0.80552 0.84017 0.73001 0.74029 0.90937 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -2.45 10.80 113.37 1.22 -1.23 16 2 S 2.51 37.21 5.80 -56.49 -0.33 36.88 16 3 O -0.96 -18.63 17.12 -127.65 -2.19 -20.82 16 4 O -0.98 -24.07 17.12 -127.65 -2.19 -26.25 16 5 C -0.67 -12.17 5.65 22.23 0.13 -12.04 16 6 C 0.00 0.05 9.47 22.33 0.21 0.26 16 7 C -0.13 -2.00 10.03 22.23 0.22 -1.78 16 8 C -0.04 -0.88 9.54 22.53 0.21 -0.67 16 9 C -0.16 -4.51 5.87 -20.09 -0.12 -4.63 16 10 C 0.54 20.37 7.89 86.79 0.68 21.06 16 11 O -0.58 -25.10 16.19 -3.86 -0.06 -25.17 16 12 N -0.51 -20.68 6.21 -175.60 -1.09 -21.77 16 13 N -0.56 -26.61 6.25 -176.63 -1.10 -27.72 16 14 C 0.54 30.53 7.86 86.36 0.68 31.21 16 15 O -0.62 -38.64 14.88 -4.30 -0.06 -38.71 16 16 C -0.56 -30.68 9.54 24.83 0.24 -30.44 16 17 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 18 C 0.03 1.83 5.49 85.31 0.47 2.29 16 19 N -0.81 -46.79 11.85 21.84 0.26 -46.53 16 20 Si 1.00 39.13 29.56 68.60 2.03 41.16 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 24 C 0.02 0.51 9.01 22.53 0.20 0.71 16 25 H 0.16 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.18 1.36 7.57 -2.91 -0.02 1.33 16 29 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.14 2.95 6.41 -2.91 -0.02 2.93 16 31 H 0.43 16.37 6.03 -213.32 -1.29 15.09 16 32 H 0.42 19.02 7.98 -213.32 -1.70 17.31 16 33 H 0.28 14.53 8.29 -92.70 -0.77 13.76 16 34 H 0.14 3.89 7.16 -2.91 -0.02 3.87 16 Total: -1.00 -88.15 321.23 -2.38 -90.53 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -1.80 Total: 33.64 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 4.15 Total: 4.74 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -1.94 Total: -96.02 kcal Atomic # 8 Polarization: -106.45 SS G_CDS: -4.50 Total: -110.94 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Atomic # 16 Polarization: 37.21 SS G_CDS: -0.33 Total: 36.88 kcal Total: -88.15 -2.38 -90.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.000 kcal (2) G-P(sol) polarization free energy of solvation -88.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds