Wall clock time and date at job start Fri Apr 10 2020 18:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46084 * 2 1 4 4 C 1.53046 * 109.45877 * 119.97312 * 2 1 3 5 5 C 1.53183 * 109.31431 * 58.64073 * 4 2 1 6 6 N 1.46935 * 108.77653 * 54.63472 * 5 4 2 7 7 C 1.34775 * 120.63332 * 126.36807 * 6 5 4 8 8 O 1.21277 * 120.00161 * 180.02562 * 7 6 5 9 9 C 1.50704 * 119.99715 * 0.02562 * 7 6 5 10 10 C 1.53001 * 109.46813 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46830 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.46921 * 180.02562 * 11 10 9 13 13 C 1.46898 * 111.00082 * 66.04295 * 12 11 10 14 14 C 1.46894 * 110.99609 * 189.99990 * 12 11 10 15 15 C 1.46931 * 118.73608 * 306.39271 * 6 5 4 16 16 C 1.53046 * 109.44674 * 240.03255 * 2 1 3 17 17 H 1.09002 * 109.49271 * 181.39705 * 16 2 1 18 18 C 1.53002 * 109.49707 * 61.30660 * 16 2 1 19 19 N 1.46494 * 109.46991 * 174.99977 * 18 16 2 20 20 C 1.36943 * 119.99828 * 179.97438 * 19 18 16 21 21 H 1.07989 * 119.99919 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99607 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00704 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99811 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47126 * 59.99994 * 24 22 20 26 26 H 1.48501 * 109.47397 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46944 * 300.00020 * 24 22 20 28 28 H 1.08994 * 109.46608 * 299.99850 * 1 2 3 29 29 H 1.08995 * 109.46659 * 60.00108 * 1 2 3 30 30 H 1.09002 * 109.46537 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.49048 * 178.59203 * 4 2 1 32 32 H 1.08988 * 109.49532 * 298.68684 * 4 2 1 33 33 H 1.09002 * 109.59073 * 174.41995 * 5 4 2 34 34 H 1.08994 * 109.58919 * 294.70656 * 5 4 2 35 35 H 1.08996 * 109.47150 * 299.99775 * 9 7 6 36 36 H 1.09005 * 109.46935 * 60.00332 * 9 7 6 37 37 H 1.09003 * 109.47357 * 299.99579 * 10 9 7 38 38 H 1.08992 * 109.47117 * 59.99812 * 10 9 7 39 39 H 1.08996 * 109.46843 * 299.99667 * 11 10 9 40 40 H 1.08992 * 109.47217 * 59.99968 * 11 10 9 41 41 H 1.08997 * 109.47348 * 59.99772 * 13 12 11 42 42 H 1.08997 * 109.46829 * 180.02562 * 13 12 11 43 43 H 1.09001 * 109.46906 * 299.99993 * 13 12 11 44 44 H 1.08997 * 109.47712 * 59.99718 * 14 12 11 45 45 H 1.09005 * 109.47005 * 179.97438 * 14 12 11 46 46 H 1.09007 * 109.47106 * 299.99368 * 14 12 11 47 47 H 1.08996 * 109.58268 * 173.39637 * 15 6 5 48 48 H 1.09003 * 109.58664 * 293.67445 * 15 6 5 49 49 H 1.08998 * 109.46766 * 294.99732 * 18 16 2 50 50 H 1.08993 * 109.47158 * 54.99376 * 18 16 2 51 51 H 0.96998 * 120.00225 * 359.97438 * 19 18 16 52 52 H 0.97002 * 120.00419 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 1.4994 -2.1542 1.2642 6 7 1.8621 -2.8090 -0.0001 7 6 2.5157 -3.9876 -0.0003 8 8 2.8099 -4.5178 -1.0506 9 6 2.8810 -4.6467 1.3048 10 6 3.6100 -5.9625 1.0251 11 6 3.9804 -6.6320 2.3501 12 7 4.6809 -7.8950 2.0815 13 6 5.9789 -7.6507 1.4385 14 6 4.8427 -8.6793 3.3129 15 6 1.4991 -2.1541 -1.2643 16 6 2.0396 -0.7209 -1.2502 17 1 3.1293 -0.7431 -1.2385 18 6 1.5566 0.0195 -2.4990 19 7 2.1418 -0.5998 -3.6907 20 6 1.8504 -0.1037 -4.9334 21 1 1.1888 0.7438 -5.0349 22 6 2.4053 -0.6902 -6.0625 23 7 3.2111 -1.7235 -5.9389 24 14 2.0083 -0.0130 -7.7576 25 1 2.4437 1.4044 -7.8388 26 1 2.7206 -0.8100 -8.7884 27 1 0.5444 -0.0954 -7.9931 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1296 -0.7432 1.2380 32 1 1.6961 -0.1936 2.1397 33 1 1.9380 -2.7019 2.0983 34 1 0.4147 -2.1346 1.3700 35 1 3.5316 -3.9849 1.8765 36 1 1.9749 -4.8482 1.8762 37 1 2.9591 -6.6242 0.4536 38 1 4.5160 -5.7615 0.4534 39 1 4.6311 -5.9705 2.9219 40 1 3.0742 -6.8330 2.9213 41 1 6.5995 -7.0393 2.0935 42 1 6.4760 -8.6024 1.2505 43 1 5.8240 -7.1293 0.4939 44 1 3.8619 -8.9057 3.7311 45 1 5.3637 -9.6094 3.0855 46 1 5.4222 -8.1052 4.0359 47 1 1.9375 -2.7018 -2.0985 48 1 0.4142 -2.1367 -1.3685 49 1 0.4697 -0.0366 -2.5570 50 1 1.8641 1.0637 -2.4440 51 1 2.7357 -1.3613 -3.5996 52 1 3.5986 -2.1336 -6.7279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133073070.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:38 Heat of formation + Delta-G solvation = -31.997312 kcal Electronic energy + Delta-G solvation = -26890.134164 eV Core-core repulsion = 23310.411392 eV Total energy + Delta-G solvation = -3579.722772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32555 -38.35793 -37.62830 -34.90167 -33.53523 -33.25600 -31.80487 -29.85021 -28.20431 -27.81129 -27.33040 -25.39699 -24.68043 -23.23040 -22.91994 -21.16061 -20.99705 -19.48011 -18.06846 -17.19150 -16.78239 -16.18707 -15.99162 -15.34174 -15.25767 -15.01849 -14.88665 -14.70885 -14.35085 -14.05096 -13.53885 -13.43477 -13.15802 -12.93774 -12.71755 -12.66291 -12.47171 -12.34269 -12.11962 -11.94401 -11.86368 -11.60699 -11.56810 -11.37841 -11.17327 -11.03461 -10.86385 -10.74860 -10.72897 -10.57859 -10.26917 -10.13780 -9.92808 -9.59008 -9.46596 -8.79866 -8.62072 -8.36626 -6.83962 -5.67039 -2.96866 2.83358 3.12021 3.49201 3.53026 3.54884 3.71254 4.49069 4.63287 4.70699 4.74573 4.86388 4.88887 4.89626 4.95566 5.07830 5.14202 5.19441 5.23618 5.28102 5.32066 5.35288 5.41931 5.43334 5.49482 5.55594 5.60634 5.65078 5.69166 5.73062 5.76406 5.85393 5.93176 5.99011 6.03143 6.04341 6.20764 6.24914 6.35460 6.38051 6.40851 6.63635 6.72719 6.75783 6.78610 6.82725 6.94012 7.60626 7.76152 8.40657 8.50664 9.61403 10.19912 10.54004 11.55162 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.003072 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.087989 B = 9113.534179 C =10981.624735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.613 5.613 7 C 0.508 3.492 8 O -0.529 6.529 9 C -0.136 4.136 10 C -0.103 4.103 11 C 0.055 3.945 12 N -0.548 5.548 13 C 0.019 3.981 14 C 0.025 3.975 15 C 0.120 3.880 16 C -0.101 4.101 17 H 0.072 0.928 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.023 0.977 47 H 0.102 0.898 48 H 0.066 0.934 49 H 0.022 0.978 50 H 0.020 0.980 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -6.024 24.726 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.017 4.017 6 N -0.347 5.347 7 C 0.296 3.704 8 O -0.405 6.405 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.072 4.072 12 N -0.272 5.272 13 C -0.129 4.129 14 C -0.124 4.124 15 C -0.002 4.002 16 C -0.121 4.121 17 H 0.091 0.909 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.120 0.880 48 H 0.084 0.916 49 H 0.040 0.960 50 H 0.037 0.963 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.904 -6.518 23.692 24.589 hybrid contribution 0.511 0.749 -0.282 0.949 sum -0.393 -5.769 23.410 24.113 Atomic orbital electron populations 1.21985 0.95257 1.01979 1.01748 1.21072 0.95998 0.99336 0.93980 0.90923 1.21942 1.01115 0.95232 0.98452 1.21736 1.00292 0.93671 0.86009 1.48199 1.57693 1.21249 1.07542 1.20622 0.77579 0.80801 0.91425 1.90774 1.53071 1.63101 1.33517 1.21632 1.02051 0.97934 0.96062 1.21355 1.01538 0.94564 0.96692 1.22169 0.98233 0.89584 0.97257 1.61933 1.20838 1.19009 1.25388 1.22472 0.89346 1.01346 0.99714 1.22379 1.01565 0.97814 0.90612 1.21710 0.99753 0.92871 0.85860 1.21676 1.00790 0.94547 0.95090 0.90941 1.20675 0.95941 0.94687 0.85440 1.42416 1.56819 1.37733 1.00794 1.19149 1.23290 1.11074 0.83824 0.91327 1.24756 1.00045 0.98319 0.97794 1.69666 1.35309 1.24181 1.28618 0.86288 0.77623 0.77970 0.84396 1.21358 1.21712 1.21312 0.93204 0.91796 0.92429 0.91578 0.90964 0.90245 0.91213 0.89320 0.89175 0.90174 0.90927 0.94898 0.90809 0.95720 0.91458 0.90516 0.91410 0.91390 0.95831 0.88017 0.91575 0.95995 0.96269 0.78105 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.12 37.16 0.30 -1.41 16 2 C -0.08 -1.04 2.71 -90.57 -0.25 -1.28 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.25 5.63 -26.61 -0.15 -1.40 16 5 C 0.11 1.02 5.87 -3.71 -0.02 1.00 16 6 N -0.61 -8.52 2.97 -172.77 -0.51 -9.03 16 7 C 0.51 7.67 7.70 -10.98 -0.08 7.58 16 8 O -0.53 -10.72 15.39 5.56 0.09 -10.64 16 9 C -0.14 -1.37 4.05 -27.88 -0.11 -1.48 16 10 C -0.10 -1.14 4.43 -26.73 -0.12 -1.26 16 11 C 0.06 0.49 4.96 -3.82 -0.02 0.47 16 12 N -0.55 -5.29 5.02 -251.26 -1.26 -6.56 16 13 C 0.02 0.18 9.32 60.06 0.56 0.74 16 14 C 0.02 0.18 9.57 60.06 0.57 0.76 16 15 C 0.12 2.04 5.04 -3.71 -0.02 2.03 16 16 C -0.10 -1.67 2.15 -90.50 -0.19 -1.87 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.16 3.26 5.19 -4.04 -0.02 3.24 16 19 N -0.73 -19.20 5.38 -59.92 -0.32 -19.52 16 20 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.35 13.06 55.49 0.72 -28.62 16 24 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 30 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.54 8.14 -51.94 -0.42 0.12 16 33 H 0.08 0.56 5.93 -51.93 -0.31 0.26 16 34 H 0.07 0.61 6.70 -51.93 -0.35 0.26 16 35 H 0.09 0.73 7.69 -51.93 -0.40 0.33 16 36 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 37 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.07 0.92 6.51 -51.93 -0.34 0.58 16 39 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 40 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 43 H 0.08 0.79 6.47 -51.93 -0.34 0.45 16 44 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 45 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 46 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.10 2.21 6.22 -51.93 -0.32 1.89 16 48 H 0.07 1.10 6.70 -51.93 -0.35 0.75 16 49 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.38 10.83 6.90 -40.82 -0.28 10.55 16 52 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -34.42 392.18 -9.69 -44.11 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -9.50 Total: 6.81 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 0.20 Total: -0.51 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.37 Total: -63.73 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.42 -9.69 -44.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133073070.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.115 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds