Wall clock time and date at job start Fri Apr 10 2020 18:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46879 * 2 1 4 4 C 1.46892 * 111.00329 * 66.04901 * 3 2 1 5 5 C 1.46904 * 110.99695 * 190.00382 * 3 2 1 6 6 C 1.53006 * 109.47244 * 170.00173 * 5 3 2 7 7 C 1.50691 * 109.47454 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99682 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00401 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.62904 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77820 * 233.58715 * 10 9 7 12 12 C 1.53033 * 109.31270 * 305.36633 * 11 10 9 13 13 H 1.09001 * 109.46425 * 181.38151 * 12 11 10 14 14 C 1.53003 * 109.45915 * 301.34251 * 12 11 10 15 15 C 1.53041 * 109.53898 * 61.36218 * 12 11 10 16 16 H 1.09002 * 109.50075 * 58.58639 * 15 12 11 17 17 C 1.53001 * 109.52290 * 178.66811 * 15 12 11 18 18 N 1.46506 * 109.46791 * 184.85281 * 17 15 12 19 19 C 1.36944 * 119.99757 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99856 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00078 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00421 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46842 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47364 * 119.99504 * 23 21 19 26 26 H 1.48501 * 109.47242 * 240.00266 * 23 21 19 27 27 C 1.46927 * 120.63516 * 179.97438 * 9 7 6 28 28 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47105 * 299.99978 * 1 2 3 30 30 H 1.09000 * 109.47197 * 59.99700 * 1 2 3 31 31 H 1.08998 * 109.47105 * 240.00022 * 2 1 3 32 32 H 1.08994 * 109.47015 * 119.99898 * 2 1 3 33 33 H 1.09002 * 109.47703 * 183.95230 * 4 3 2 34 34 H 1.09001 * 109.47076 * 303.95539 * 4 3 2 35 35 H 1.09001 * 109.47176 * 63.94711 * 4 3 2 36 36 H 1.08997 * 109.47588 * 49.99784 * 5 3 2 37 37 H 1.08997 * 109.47082 * 289.99472 * 5 3 2 38 38 H 1.09004 * 109.46769 * 59.99367 * 6 5 3 39 39 H 1.09003 * 109.46769 * 300.00008 * 6 5 3 40 40 H 1.09006 * 109.58406 * 353.37631 * 10 9 7 41 41 H 1.09002 * 109.59019 * 113.79619 * 10 9 7 42 42 H 1.09000 * 109.49511 * 65.31256 * 11 10 9 43 43 H 1.08995 * 109.49883 * 185.40976 * 11 10 9 44 44 H 1.09000 * 109.46981 * 180.02562 * 14 12 11 45 45 H 1.09002 * 109.46949 * 300.06791 * 14 12 11 46 46 H 1.08996 * 109.47314 * 60.06799 * 14 12 11 47 47 H 1.08992 * 109.47207 * 304.85203 * 17 15 12 48 48 H 1.09000 * 109.46940 * 64.85762 * 17 15 12 49 49 H 0.96990 * 120.00248 * 0.02562 * 18 17 15 50 50 H 0.96994 * 120.00058 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.58859 * 246.20187 * 27 9 7 52 52 H 1.09001 * 109.58530 * 6.48424 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2532 5 6 3.4685 1.4311 -0.2382 6 6 3.8999 2.8792 -0.4792 7 6 5.3862 2.9266 -0.7230 8 8 6.0365 1.9030 -0.7052 9 7 5.9930 4.1065 -0.9596 10 6 5.2187 5.3550 -0.9837 11 6 5.4950 6.0812 -2.3039 12 6 7.0040 6.2744 -2.4692 13 1 7.2020 6.8127 -3.3961 14 6 7.5474 7.0790 -1.2867 15 6 7.6928 4.9085 -2.5159 16 1 7.2884 4.3252 -3.3432 17 6 9.1976 5.1011 -2.7144 18 7 9.8402 3.7944 -2.8749 19 6 11.1937 3.7160 -3.0677 20 1 11.7873 4.6176 -3.1018 21 6 11.8025 2.4780 -3.2203 22 7 11.0789 1.3792 -3.1792 23 14 13.6487 2.3711 -3.4840 24 1 14.2277 3.7386 -3.4909 25 1 14.2605 1.5796 -2.3866 26 1 13.9255 1.7103 -4.7848 27 6 7.4414 4.1689 -1.1985 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.9824 3.1099 1.1988 34 1 0.5920 2.0179 1.4052 35 1 2.1769 1.5790 2.0859 36 1 3.7122 0.8290 -1.1135 37 1 3.9925 1.0360 0.6320 38 1 3.6561 3.4813 0.3962 39 1 3.3758 3.2744 -1.3494 40 1 4.1555 5.1270 -0.9075 41 1 5.5195 5.9877 -0.1487 42 1 5.1113 5.4869 -3.1332 43 1 5.0026 7.0536 -2.2942 44 1 8.6222 7.2170 -1.4044 45 1 7.0570 8.0519 -1.2532 46 1 7.3503 6.5407 -0.3597 47 1 9.3722 5.7038 -3.6056 48 1 9.6167 5.6078 -1.8451 49 1 9.3069 2.9848 -2.8453 50 1 11.5044 0.5141 -3.2854 51 1 7.9238 4.7047 -0.3811 52 1 7.8451 3.1584 -1.2617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133222441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:47 Heat of formation + Delta-G solvation = -53.285703 kcal Electronic energy + Delta-G solvation = -27055.435938 eV Core-core repulsion = 23474.790032 eV Total energy + Delta-G solvation = -3580.645906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51939 -39.57030 -38.53105 -36.63721 -34.90752 -33.54007 -33.31000 -31.53220 -30.37225 -28.69038 -27.91990 -26.90148 -25.77125 -24.90103 -23.63143 -22.56112 -21.77545 -20.66479 -19.37237 -18.90813 -18.27687 -17.10621 -17.00905 -16.79047 -16.49473 -16.18323 -15.81086 -15.67456 -15.45100 -15.14279 -15.00893 -14.81419 -14.48376 -14.21762 -14.05208 -13.77389 -13.62351 -13.22300 -13.05929 -12.92874 -12.89692 -12.70871 -12.67963 -12.62541 -12.43805 -12.26084 -12.10835 -11.96380 -11.91797 -11.86906 -11.74992 -11.70437 -11.34451 -11.20520 -10.95416 -10.75771 -9.55669 -9.37582 -9.02077 -7.96083 -5.26719 1.43521 1.45832 1.55923 1.62771 1.97353 2.53830 2.92258 3.36797 3.60985 3.73474 3.84678 3.87013 3.87516 4.07306 4.11828 4.12840 4.24105 4.29582 4.32352 4.40543 4.52679 4.54672 4.56969 4.59897 4.61432 4.64859 4.75478 4.79743 4.85052 4.88766 4.91520 4.94236 5.00470 5.02562 5.04444 5.11305 5.14079 5.21060 5.26915 5.32101 5.37170 5.42775 5.47294 5.56666 5.62648 5.99711 6.09362 6.24591 6.47223 7.20675 7.29702 8.06576 8.28598 9.27638 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.003076 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.078483 B = 9099.751580 C =10749.147138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 N -0.543 5.543 4 C 0.014 3.986 5 C 0.073 3.927 6 C -0.116 4.116 7 C 0.500 3.500 8 O -0.597 6.597 9 N -0.607 5.607 10 C 0.098 3.902 11 C -0.123 4.123 12 C -0.080 4.080 13 H 0.078 0.922 14 C -0.149 4.149 15 C -0.089 4.089 16 H 0.048 0.952 17 C 0.159 3.841 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.080 0.920 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.978 3.022 24 H -0.261 1.261 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.019 0.981 36 H 0.059 0.941 37 H 0.022 0.978 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.112 0.888 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.023 0.977 48 H 0.030 0.970 49 H 0.369 0.631 50 H 0.250 0.750 51 H 0.070 0.930 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 11.122 8.476 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 N -0.268 5.268 4 C -0.134 4.134 5 C -0.055 4.055 6 C -0.156 4.156 7 C 0.289 3.711 8 O -0.478 6.478 9 N -0.339 5.339 10 C -0.023 4.023 11 C -0.161 4.161 12 C -0.099 4.099 13 H 0.096 0.904 14 C -0.206 4.206 15 C -0.109 4.109 16 H 0.066 0.934 17 C 0.032 3.968 18 N -0.391 5.391 19 C -0.375 4.375 20 H 0.098 0.902 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.806 3.194 24 H -0.185 1.185 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.006 3.994 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.130 0.870 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.048 0.952 49 H 0.201 0.799 50 H 0.058 0.942 51 H 0.088 0.912 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.695 10.949 8.095 28.200 hybrid contribution 1.924 -1.647 0.273 2.547 sum -22.771 9.302 8.368 25.982 Atomic orbital electron populations 1.21751 0.93030 1.02340 1.02691 1.22169 0.97435 0.88355 1.00477 1.62068 1.12188 1.16635 1.35871 1.22611 1.02352 0.99779 0.88657 1.21692 0.87554 0.96071 1.00208 1.21578 0.88945 0.98810 1.06235 1.21488 0.91578 0.82487 0.75500 1.90751 1.68314 1.35296 1.53462 1.48276 1.08107 1.07924 1.69636 1.22187 0.97140 0.83816 0.99127 1.21947 0.94749 1.02272 0.97141 1.21072 0.95508 0.93045 1.00292 0.90367 1.21955 1.00937 1.00317 0.97356 1.21526 0.95095 0.97978 0.96279 0.93394 1.20880 0.91052 0.87122 0.97712 1.42708 1.05128 1.03839 1.87454 1.19711 0.85377 0.92744 1.39718 0.90248 1.25683 1.02740 0.95167 1.03761 1.69885 1.36135 0.97322 1.59019 0.85010 0.79780 0.77906 0.76679 1.18545 1.22150 1.22004 1.21311 0.80813 1.00197 0.97070 0.91372 0.91845 0.91960 0.91556 0.95325 0.89747 0.89622 0.96248 0.92220 0.96011 0.86046 0.85971 0.86721 0.89258 0.92199 0.86962 0.93576 0.89978 0.92593 0.95914 0.95232 0.79901 0.94155 0.91191 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.84 71.98 0.71 -1.05 16 2 C 0.04 0.75 5.68 86.30 0.49 1.24 16 3 N -0.54 -9.84 4.76 -922.47 -4.39 -14.23 16 4 C 0.01 0.18 9.13 127.69 1.17 1.35 16 5 C 0.07 1.72 4.25 86.30 0.37 2.09 16 6 C -0.12 -2.28 3.97 29.85 0.12 -2.16 16 7 C 0.50 15.41 7.70 87.65 0.67 16.08 16 8 O -0.60 -26.02 15.39 -3.05 -0.05 -26.06 16 9 N -0.61 -16.58 2.97 -818.98 -2.43 -19.01 16 10 C 0.10 1.53 5.87 86.36 0.51 2.04 16 11 C -0.12 -1.92 5.62 30.67 0.17 -1.75 16 12 C -0.08 -1.77 2.71 -10.77 -0.03 -1.80 16 13 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 14 C -0.15 -2.88 8.11 71.98 0.58 -2.29 16 15 C -0.09 -2.98 2.15 -10.73 -0.02 -3.01 16 16 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 17 C 0.16 6.58 5.19 86.38 0.45 7.02 16 18 N -0.75 -40.89 5.38 -343.45 -1.85 -42.73 16 19 C -0.24 -14.35 9.99 84.03 0.84 -13.51 16 20 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 21 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 22 N -0.97 -64.08 13.06 21.65 0.28 -63.80 16 23 Si 0.98 48.42 29.55 68.60 2.03 50.44 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 26 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 27 C 0.13 4.59 5.05 86.35 0.44 5.02 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.68 6.47 -2.39 -0.02 0.66 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 1.26 7.93 -2.39 -0.02 1.24 16 32 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 33 H 0.08 0.86 6.47 -2.39 -0.02 0.85 16 34 H 0.09 0.90 6.30 -2.39 -0.02 0.88 16 35 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.06 1.67 7.89 -2.39 -0.02 1.65 16 37 H 0.02 0.59 8.08 -2.39 -0.02 0.57 16 38 H 0.12 1.63 6.35 -2.38 -0.02 1.62 16 39 H 0.12 1.91 7.69 -2.39 -0.02 1.90 16 40 H 0.11 1.08 5.93 -2.38 -0.01 1.07 16 41 H 0.09 1.14 6.69 -2.39 -0.02 1.12 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.10 4.98 -2.39 -0.01 1.09 16 47 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.03 1.20 6.73 -2.39 -0.02 1.18 16 49 H 0.37 22.22 6.89 -92.72 -0.64 21.58 16 50 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 51 H 0.07 2.38 6.69 -2.39 -0.02 2.36 16 52 H 0.04 2.12 6.21 -2.39 -0.01 2.10 16 Total: -1.00 -80.02 388.63 0.77 -79.25 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.25 Total: 31.38 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.93 Total: 4.77 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -8.39 Total: -139.78 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.44 kcal Total: -80.02 0.77 -79.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133222441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.966 kcal (2) G-P(sol) polarization free energy of solvation -80.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds