Wall clock time and date at job start Fri Apr 10 2020 18:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47719 * 2 1 4 4 C 1.46896 * 110.99842 * 66.04520 * 3 2 1 5 5 C 1.46896 * 111.00302 * 190.00344 * 3 2 1 6 6 C 1.52997 * 109.47114 * 169.99792 * 5 3 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46923 * 120.63150 * 359.72421 * 9 7 6 11 11 C 1.53617 * 108.54542 * 126.37048 * 10 9 7 12 12 C 1.53045 * 109.24498 * 54.85351 * 11 10 9 13 13 H 1.08995 * 109.46132 * 178.49602 * 12 11 10 14 14 C 1.52995 * 109.44656 * 58.52331 * 12 11 10 15 15 C 1.53041 * 109.53554 * 298.51548 * 12 11 10 16 16 H 1.09001 * 109.49823 * 301.41025 * 15 12 11 17 17 C 1.53002 * 109.49663 * 181.31560 * 15 12 11 18 18 N 1.46501 * 109.47037 * 175.15746 * 17 15 12 19 19 C 1.36934 * 119.99718 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00323 * 0.02562 * 19 18 17 21 21 C 1.38820 * 119.99935 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99972 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99772 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47460 * 89.99948 * 23 21 19 25 25 H 1.48503 * 109.46899 * 210.00044 * 23 21 19 26 26 H 1.48500 * 109.47064 * 329.99444 * 23 21 19 27 27 C 1.46923 * 120.62774 * 179.97438 * 9 7 6 28 28 H 1.09004 * 109.46506 * 300.00010 * 1 2 3 29 29 H 1.08995 * 109.46897 * 59.99887 * 1 2 3 30 30 H 1.08994 * 109.47558 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47044 * 239.99495 * 2 1 3 32 32 H 1.09005 * 109.47311 * 120.00380 * 2 1 3 33 33 H 1.08999 * 109.47174 * 183.95883 * 4 3 2 34 34 H 1.08998 * 109.47389 * 303.95739 * 4 3 2 35 35 H 1.08999 * 109.47263 * 63.95997 * 4 3 2 36 36 H 1.09001 * 109.47271 * 50.00061 * 5 3 2 37 37 H 1.09004 * 109.47041 * 289.99907 * 5 3 2 38 38 H 1.09001 * 109.46832 * 59.99999 * 6 5 3 39 39 H 1.09000 * 109.47611 * 300.00296 * 6 5 3 40 40 H 1.09006 * 109.58416 * 246.20094 * 10 9 7 41 41 H 1.08998 * 109.58688 * 6.62049 * 10 9 7 42 42 H 1.09007 * 109.63010 * 294.86434 * 11 10 9 43 43 H 1.09002 * 109.45914 * 174.74052 * 11 10 9 44 44 H 1.08998 * 109.47867 * 299.94280 * 14 12 11 45 45 H 1.09004 * 109.46856 * 59.94303 * 14 12 11 46 46 H 1.09003 * 109.46773 * 179.97438 * 14 12 11 47 47 H 1.08995 * 109.46845 * 295.16259 * 17 15 12 48 48 H 1.09003 * 109.46688 * 55.16302 * 17 15 12 49 49 H 0.97001 * 120.00110 * 0.02562 * 18 17 15 50 50 H 0.97001 * 119.99829 * 180.02562 * 22 21 19 51 51 H 1.09002 * 109.59193 * 353.37977 * 27 9 7 52 52 H 1.09002 * 109.58352 * 113.65489 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6704 2.0668 1.2533 5 6 3.4686 1.4310 -0.2382 6 6 3.9000 2.8789 -0.4792 7 6 5.3865 2.9263 -0.7230 8 8 6.0366 1.9026 -0.7061 9 7 5.9933 4.1062 -0.9597 10 6 5.2181 5.3540 -0.9892 11 6 5.8614 6.3520 -0.0145 12 6 7.3402 6.5225 -0.3700 13 1 7.7938 7.2502 0.3028 14 6 7.4635 7.0160 -1.8129 15 6 8.0590 5.1790 -0.2275 16 1 7.9502 4.8147 0.7940 17 6 9.5437 5.3573 -0.5514 18 7 10.2521 4.0992 -0.3035 19 6 11.6009 4.0178 -0.5253 20 1 12.1426 4.8811 -0.8826 21 6 12.2722 2.8255 -0.2910 22 7 13.5685 2.7471 -0.5047 23 14 11.3353 1.3320 0.3263 24 1 10.8463 0.5410 -0.8314 25 1 12.2354 0.4910 1.1556 26 1 10.1793 1.7767 1.1456 27 6 7.4416 4.1684 -1.1986 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.9826 3.1097 1.1987 34 1 0.5921 2.0179 1.4052 35 1 2.1771 1.5790 2.0859 36 1 3.7122 0.8288 -1.1135 37 1 3.9926 1.0357 0.6320 38 1 3.6564 3.4811 0.3961 39 1 3.3760 3.2743 -1.3494 40 1 5.2280 5.7665 -1.9982 41 1 4.1911 5.1534 -0.6843 42 1 5.7733 5.9766 1.0051 43 1 5.3550 7.3140 -0.0931 44 1 7.0104 6.2882 -2.4860 45 1 6.9515 7.9729 -1.9146 46 1 8.5166 7.1380 -2.0663 47 1 9.6560 5.6374 -1.5987 48 1 9.9619 6.1405 0.0811 49 1 9.7656 3.3236 0.0170 50 1 14.0375 1.9138 -0.3413 51 1 7.8821 3.1854 -1.0318 52 1 7.6294 4.4835 -2.2250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133222442.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:51 Heat of formation + Delta-G solvation = -26.169003 kcal Electronic energy + Delta-G solvation = -27208.308970 eV Core-core repulsion = 23628.838933 eV Total energy + Delta-G solvation = -3579.470037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50177 -38.61555 -37.69211 -35.11694 -33.60935 -32.66003 -31.87324 -30.36423 -29.65453 -27.78298 -27.11254 -25.69649 -24.81599 -23.03009 -22.73803 -21.13605 -21.07166 -19.64402 -18.25963 -17.57855 -17.21586 -16.23727 -16.07952 -15.64003 -15.35414 -15.02572 -14.91252 -14.54574 -14.33750 -14.08199 -13.78956 -13.54858 -13.38530 -13.15376 -12.79871 -12.66861 -12.51539 -12.45915 -12.24345 -12.13529 -11.92341 -11.73799 -11.63265 -11.48820 -11.19943 -11.19400 -11.15424 -11.02104 -10.81360 -10.68475 -10.34588 -10.15336 -10.02605 -9.67968 -9.51975 -8.84101 -8.68317 -8.52624 -7.17770 -5.72230 -3.07422 2.65004 2.92375 3.46227 3.51198 3.54595 3.62781 4.49088 4.57071 4.62377 4.65960 4.72418 4.76804 4.81787 4.86044 4.89469 5.07609 5.11323 5.16294 5.18426 5.20490 5.22558 5.33393 5.44594 5.48669 5.53967 5.57866 5.59946 5.63307 5.65791 5.67470 5.68595 5.74887 5.78164 5.81459 5.88675 5.91231 6.00350 6.21126 6.24930 6.28274 6.43382 6.54681 6.68680 6.70917 6.72353 6.80008 7.42800 8.03612 8.20833 8.46893 9.26142 9.99140 10.18480 11.46068 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.003534 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.095329 B = 7920.946567 C = 9716.078297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.069 3.931 6 C -0.134 4.134 7 C 0.511 3.489 8 O -0.539 6.539 9 N -0.611 5.611 10 C 0.105 3.895 11 C -0.129 4.129 12 C -0.084 4.084 13 H 0.075 0.925 14 C -0.154 4.154 15 C -0.106 4.106 16 H 0.072 0.928 17 C 0.165 3.835 18 N -0.757 5.757 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.882 3.118 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.118 3.882 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.094 0.906 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.784 4.874 0.657 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.132 4.132 5 C -0.059 4.059 6 C -0.174 4.174 7 C 0.299 3.701 8 O -0.416 6.416 9 N -0.345 5.345 10 C -0.018 4.018 11 C -0.167 4.167 12 C -0.103 4.103 13 H 0.093 0.907 14 C -0.211 4.211 15 C -0.126 4.126 16 H 0.090 0.910 17 C 0.037 3.963 18 N -0.403 5.403 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.004 4.004 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.195 0.805 50 H 0.069 0.931 51 H 0.113 0.887 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.433 4.621 0.215 28.807 hybrid contribution -0.086 -1.418 1.200 1.860 sum -28.519 3.203 1.415 28.733 Atomic orbital electron populations 1.21804 0.94799 1.01573 1.02419 1.22086 0.96041 0.88636 1.01096 1.62012 1.13954 1.16185 1.34777 1.22499 1.01457 0.99345 0.89871 1.21839 0.86376 0.95628 1.02093 1.21633 0.92531 0.99055 1.04175 1.20618 0.89937 0.83160 0.76428 1.90742 1.66748 1.33113 1.50957 1.48179 1.09080 1.06450 1.70743 1.21877 0.95021 0.84590 1.00298 1.22022 0.96385 0.98958 0.99355 1.21055 0.94507 0.96946 0.97795 0.90670 1.21997 1.02728 1.00353 0.96013 1.21729 0.96385 0.94623 0.99821 0.90974 1.20667 0.87747 0.89589 0.98298 1.42784 1.06745 1.09185 1.81578 1.19039 0.82581 0.98255 1.37457 0.89220 1.24651 0.95422 0.97482 1.01459 1.69704 1.06985 1.26453 1.55141 0.86589 0.79100 0.84084 0.79032 1.20872 1.21756 1.20344 1.21716 0.78120 1.01677 0.98909 0.92703 0.91815 0.92294 0.90613 0.94810 0.91245 0.91103 0.95542 0.89862 0.93820 0.89080 0.88192 0.90914 0.90016 0.91584 0.90757 0.92432 0.93010 0.91634 0.95051 0.95321 0.80544 0.93102 0.88743 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.84 37.16 0.37 -0.60 16 2 C 0.05 0.40 5.68 -3.83 -0.02 0.38 16 3 N -0.54 -4.93 4.76 -242.92 -1.16 -6.08 16 4 C 0.02 0.12 9.13 60.06 0.55 0.67 16 5 C 0.07 0.74 4.25 -3.83 -0.02 0.72 16 6 C -0.13 -1.31 3.97 -27.88 -0.11 -1.42 16 7 C 0.51 7.21 7.70 -10.98 -0.08 7.13 16 8 O -0.54 -10.16 15.39 5.56 0.09 -10.08 16 9 N -0.61 -7.88 2.97 -172.54 -0.51 -8.40 16 10 C 0.11 0.93 5.90 -3.49 -0.02 0.91 16 11 C -0.13 -1.14 5.64 -26.39 -0.15 -1.29 16 12 C -0.08 -0.95 2.71 -90.58 -0.25 -1.20 16 13 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -1.61 8.11 37.15 0.30 -1.31 16 15 C -0.11 -1.62 2.15 -90.52 -0.19 -1.82 16 16 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 17 C 0.16 3.16 5.19 -4.04 -0.02 3.14 16 18 N -0.76 -18.59 5.18 -59.91 -0.31 -18.90 16 19 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 20 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -30.16 13.97 55.49 0.78 -29.38 16 23 Si 0.88 23.55 27.74 -169.99 -4.71 18.84 16 24 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 26 H -0.28 -7.16 6.52 56.52 0.37 -6.79 16 27 C 0.12 1.86 5.04 -3.74 -0.02 1.84 16 28 H 0.05 0.34 6.47 -51.93 -0.34 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.63 7.93 -51.92 -0.41 0.22 16 32 H 0.03 0.29 8.12 -51.93 -0.42 -0.14 16 33 H 0.07 0.47 6.47 -51.93 -0.34 0.13 16 34 H 0.07 0.46 6.30 -51.93 -0.33 0.13 16 35 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 37 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.09 0.74 6.11 -51.93 -0.32 0.43 16 39 H 0.10 0.84 7.93 -51.93 -0.41 0.42 16 40 H 0.07 0.59 6.69 -51.93 -0.35 0.24 16 41 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 42 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.61 4.97 -51.93 -0.26 0.35 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.78 6.57 -51.93 -0.34 0.43 16 47 H 0.03 0.60 6.72 -51.93 -0.35 0.25 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.36 8.97 4.75 -40.82 -0.19 8.78 16 50 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 51 H 0.09 1.86 6.20 -51.93 -0.32 1.54 16 52 H 0.07 1.09 6.70 -51.93 -0.35 0.75 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -34.59 385.51 -9.20 -43.79 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -9.26 Total: 4.43 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.08 Total: -0.02 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -1.20 Total: -62.76 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.71 Total: 18.84 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.59 -9.20 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133222442.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.620 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds