Wall clock time and date at job start Fri Apr 10 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47507 * 2 1 4 4 N 1.46891 * 109.47634 * 179.97438 * 3 2 1 5 5 C 1.46906 * 110.99817 * 66.04986 * 4 3 2 6 6 C 1.46896 * 111.00268 * 190.00042 * 4 3 2 7 7 C 1.50700 * 109.47161 * 170.00132 * 6 4 3 8 8 O 1.21282 * 120.00058 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99997 * 179.97438 * 7 6 4 10 10 C 1.46921 * 120.63225 * 0.02846 * 9 7 6 11 11 C 1.53191 * 108.77411 * 233.58641 * 10 9 7 12 12 C 1.53043 * 109.31132 * 305.35957 * 11 10 9 13 13 H 1.09002 * 109.46131 * 301.34824 * 12 11 10 14 14 C 1.53001 * 109.44748 * 181.37889 * 12 11 10 15 15 C 1.53046 * 109.53475 * 61.36818 * 12 11 10 16 16 H 1.08995 * 109.49919 * 58.61932 * 15 12 11 17 17 C 1.53006 * 109.49435 * 178.68408 * 15 12 11 18 18 N 1.46495 * 109.46960 * 185.00197 * 17 15 12 19 19 C 1.36936 * 119.99962 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00066 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99844 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47214 * 89.99987 * 23 21 19 25 25 H 1.48507 * 109.47286 * 209.99878 * 23 21 19 26 26 H 1.48499 * 109.47118 * 330.00085 * 23 21 19 27 27 C 1.46925 * 120.62980 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.46874 * 59.99696 * 1 2 3 29 29 H 1.09001 * 109.46911 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46926 * 299.99969 * 1 2 3 31 31 H 1.09008 * 109.47135 * 240.00406 * 2 1 3 32 32 H 1.09003 * 109.47504 * 120.00516 * 2 1 3 33 33 H 1.09008 * 109.46591 * 60.00073 * 3 2 1 34 34 H 1.09003 * 109.47160 * 300.00727 * 3 2 1 35 35 H 1.09001 * 109.47042 * 183.95682 * 5 4 3 36 36 H 1.09004 * 109.46659 * 303.95332 * 5 4 3 37 37 H 1.08997 * 109.47172 * 63.95397 * 5 4 3 38 38 H 1.08997 * 109.46911 * 50.00422 * 6 4 3 39 39 H 1.08999 * 109.47531 * 290.00500 * 6 4 3 40 40 H 1.09002 * 109.58756 * 353.36576 * 10 9 7 41 41 H 1.09001 * 109.59125 * 113.65472 * 10 9 7 42 42 H 1.09004 * 109.49733 * 185.41012 * 11 10 9 43 43 H 1.08994 * 109.50132 * 65.31225 * 11 10 9 44 44 H 1.08992 * 109.47480 * 299.96774 * 14 12 11 45 45 H 1.08996 * 109.47171 * 59.97125 * 14 12 11 46 46 H 1.09008 * 109.46811 * 179.97438 * 14 12 11 47 47 H 1.09001 * 109.46991 * 304.99842 * 17 15 12 48 48 H 1.09000 * 109.47170 * 64.99839 * 17 15 12 49 49 H 0.97002 * 120.00280 * 359.97438 * 18 17 15 50 50 H 0.96999 * 119.99556 * 179.97438 * 22 21 19 51 51 H 1.09003 * 109.59222 * 6.62634 * 27 9 7 52 52 H 1.09006 * 109.70276 * 246.27263 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0359 0.8856 -1.2525 6 6 4.0354 2.7931 0.2388 7 6 5.5216 2.7183 0.4767 8 8 6.0868 1.6455 0.4500 9 7 6.2229 3.8436 0.7182 10 6 5.5524 5.1505 0.7532 11 6 6.2699 6.0987 -0.2127 12 6 7.7589 6.1466 0.1378 13 1 7.8790 6.4834 1.1675 14 6 8.4727 7.1192 -0.8032 15 6 8.3661 4.7502 -0.0160 16 1 8.2249 4.4028 -1.0395 17 6 9.8615 4.8056 0.3028 18 7 10.4655 3.4970 0.0406 19 6 11.8042 3.3053 0.2556 20 1 12.4149 4.1190 0.6182 21 6 12.3765 2.0652 0.0077 22 7 11.6322 1.0733 -0.4337 23 14 14.2028 1.8039 0.3004 24 1 14.4200 1.3479 1.6968 25 1 14.7129 0.7751 -0.6413 26 1 14.9273 3.0810 0.0783 27 6 7.6724 3.7868 0.9514 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 5.1233 0.8322 -1.1975 36 1 3.6303 -0.1147 -1.4044 37 1 3.7452 1.5259 -2.0853 38 1 3.5486 3.2236 1.1138 39 1 3.8378 3.4188 -0.6315 40 1 4.5124 5.0359 0.4475 41 1 5.5937 5.5554 1.7643 42 1 5.8434 7.0980 -0.1255 43 1 6.1480 5.7384 -1.2341 44 1 8.3527 6.7826 -1.8329 45 1 8.0408 8.1139 -0.6935 46 1 9.5332 7.1539 -0.5536 47 1 10.3390 5.5584 -0.3244 48 1 9.9999 5.0660 1.3521 49 1 9.9171 2.7660 -0.2847 50 1 12.0322 0.2069 -0.6073 51 1 8.0312 2.7724 0.7768 52 1 7.8911 4.0799 1.9783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133274516.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:57 Heat of formation + Delta-G solvation = -28.029277 kcal Electronic energy + Delta-G solvation = -27138.682367 eV Core-core repulsion = 23559.131662 eV Total energy + Delta-G solvation = -3579.550705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27609 -38.43009 -37.07224 -34.93736 -33.64413 -33.37502 -31.84735 -29.90533 -29.00855 -27.59820 -27.11516 -25.44939 -23.74563 -23.19397 -22.65517 -21.19941 -20.93783 -19.83344 -18.81806 -17.24504 -16.88572 -16.04800 -15.97030 -15.50430 -15.01809 -14.82448 -14.55108 -14.35714 -14.16990 -13.87752 -13.65554 -13.40414 -13.22375 -13.06762 -12.91551 -12.56381 -12.48481 -12.26020 -12.03455 -11.87334 -11.80791 -11.71622 -11.49280 -11.44877 -11.26968 -10.96573 -10.86084 -10.76913 -10.75488 -10.54458 -10.24293 -10.12490 -9.90222 -9.57920 -9.44358 -8.80291 -8.47212 -8.34630 -6.83502 -5.67284 -2.96835 2.82441 3.00537 3.48847 3.53222 3.55503 3.82098 4.51897 4.62785 4.66423 4.70024 4.79745 4.85253 4.91746 5.02784 5.06551 5.16393 5.18904 5.24091 5.29870 5.30251 5.38635 5.46442 5.54929 5.59373 5.63971 5.68495 5.69305 5.74391 5.77987 5.83424 5.92072 5.92512 5.98732 6.02951 6.05109 6.19533 6.24505 6.27760 6.35049 6.47863 6.61769 6.67796 6.82111 6.87301 6.93600 6.94460 7.60147 7.76624 8.43360 8.50471 9.61333 10.19843 10.53901 11.54995 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.003264 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.087660 B = 8575.698280 C =10364.781559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.056 3.944 4 N -0.526 5.526 5 C 0.015 3.985 6 C 0.039 3.961 7 C 0.510 3.490 8 O -0.511 6.511 9 N -0.614 5.614 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.084 4.084 13 H 0.071 0.929 14 C -0.148 4.148 15 C -0.101 4.101 16 H 0.072 0.928 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.121 3.879 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.018 0.982 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.026 0.974 48 H 0.018 0.982 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.103 0.897 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.105 9.095 0.335 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.132 4.132 6 C -0.092 4.092 7 C 0.297 3.703 8 O -0.385 6.385 9 N -0.349 5.349 10 C -0.016 4.016 11 C -0.167 4.167 12 C -0.103 4.103 13 H 0.089 0.911 14 C -0.205 4.205 15 C -0.120 4.120 16 H 0.091 0.909 17 C 0.031 3.969 18 N -0.377 5.377 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.209 1.209 27 C 0.000 4.000 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.037 0.963 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.044 0.956 48 H 0.035 0.965 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.121 0.879 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.467 8.212 0.739 23.932 hybrid contribution 0.548 0.247 -0.624 0.866 sum -21.920 8.459 0.115 23.496 Atomic orbital electron populations 1.21735 0.95676 1.01784 1.01611 1.21546 0.95138 0.96265 1.03113 1.22195 0.86847 0.97622 1.00535 1.61643 1.06894 1.19885 1.36535 1.22635 1.03410 0.99264 0.87915 1.21999 0.93670 0.91361 1.02151 1.20425 0.88886 0.83916 0.77105 1.90738 1.70914 1.27736 1.49108 1.48192 1.09202 1.06122 1.71402 1.21710 0.96194 0.83686 0.99998 1.21981 0.96047 0.99018 0.99631 1.21087 0.93716 0.95526 0.99998 0.91081 1.21882 1.01239 0.97924 0.99459 1.21699 0.96419 0.93880 1.00051 0.90908 1.20722 0.88981 0.89869 0.97367 1.42415 1.07279 1.08049 1.79993 1.19191 0.85166 0.95803 1.37061 0.91288 1.24758 0.97851 0.96145 1.02213 1.69680 1.34471 1.02184 1.51397 0.86213 0.85336 0.77310 0.77452 1.21757 1.21826 1.20859 1.21680 0.77288 1.02750 0.98309 0.92968 0.92507 0.92712 0.91756 0.90907 0.90906 0.95005 0.88922 0.91173 0.96319 0.88271 0.92241 0.90437 0.91358 0.90940 0.91582 0.92825 0.93270 0.91610 0.95592 0.96452 0.78119 0.93510 0.87854 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.06 5.86 -26.73 -0.16 -1.22 16 3 C 0.06 0.51 4.96 -3.83 -0.02 0.49 16 4 N -0.53 -6.44 4.50 -244.37 -1.10 -7.54 16 5 C 0.02 0.20 9.01 60.07 0.54 0.74 16 6 C 0.04 0.44 3.79 -4.98 -0.02 0.42 16 7 C 0.51 7.88 7.42 -10.98 -0.08 7.79 16 8 O -0.51 -10.39 13.72 5.56 0.08 -10.32 16 9 N -0.61 -8.59 2.97 -172.80 -0.51 -9.10 16 10 C 0.11 1.03 6.34 -3.71 -0.02 1.01 16 11 C -0.13 -1.24 5.36 -26.61 -0.14 -1.39 16 12 C -0.08 -1.02 2.23 -90.57 -0.20 -1.23 16 13 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -1.73 8.82 37.16 0.33 -1.40 16 15 C -0.10 -1.65 1.92 -90.52 -0.17 -1.82 16 16 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 17 C 0.16 3.20 5.41 -4.04 -0.02 3.17 16 18 N -0.73 -19.07 5.38 -59.91 -0.32 -19.39 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 23 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.12 2.07 5.52 -3.74 -0.02 2.05 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.58 6.47 -51.92 -0.34 0.24 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.59 7.93 -51.92 -0.41 0.17 16 34 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 35 H 0.09 1.50 5.88 -51.93 -0.31 1.19 16 36 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.89 7.73 -51.93 -0.40 0.49 16 39 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 40 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.85 6.29 -51.92 -0.33 0.52 16 47 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.38 10.76 6.90 -40.82 -0.28 10.48 16 50 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 51 H 0.10 2.23 6.21 -51.93 -0.32 1.90 16 52 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -33.92 394.26 -9.71 -43.63 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -9.62 Total: 6.85 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.13 Total: 0.43 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.21 Total: -64.55 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.92 -9.71 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133274516.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.598 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds